mRNA_L-elsbetiae_contig15178.3698.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15178.3698.1
Unique NamemRNA_L-elsbetiae_contig15178.3698.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15178.3698.1 vs. uniprot
Match: D8LHX8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHX8_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 2.670e-46
Identity = 72/100 (72.00%), Postives = 83/100 (83.00%), Query Frame = 1 
Query:    1 GSVSGGAITCTLCDQVKPVSEYSRNQVSRFGREVCQRCLMREGAAAAPPTHIAPAAGEGFVRCVACCQLKTTSAFGVNQLRRRAGIERCMSCVENDHGSV 300
            G+ + GAITCT+C   KP SEYSRNQ++R  REVCQ CLM +G  AAPP+ +APAAGEG VRCVACCQ+KTTS+FG+NQLRRRAGIERCM CVE D GSV
Sbjct:    3 GASASGAITCTVCGVRKPASEYSRNQLARSSREVCQVCLMSDGTVAAPPSRVAPAAGEGVVRCVACCQVKTTSSFGINQLRRRAGIERCMLCVEKDLGSV 102
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15178.3698.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHX8_ECTSI2.670e-4672.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15178contigL-elsbetiae_contig15178:169..585 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionStc1 domain
Ec32 orthologEc-18_000880.1
Exons1
Model size417
Cds size417
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.6301367-CDS-L-elsbetiae_contig15178:168..5851622815617.6301367-CDS-L-elsbetiae_contig15178:168..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15178 169..585 -
1691682994.0801444-CDS-L-elsbetiae_contig15178:168..5851691682994.0801444-CDS-L-elsbetiae_contig15178:168..585Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15178 169..585 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15178.3698.1prot_L-elsbetiae_contig15178.3698.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15178 169..585 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15178.3698.1

>prot_L-elsbetiae_contig15178.3698.1 ID=prot_L-elsbetiae_contig15178.3698.1|Name=mRNA_L-elsbetiae_contig15178.3698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
GSVSGGAITCTLCDQVKPVSEYSRNQVSRFGREVCQRCLMREGAAAAPPT
HIAPAAGEGFVRCVACCQLKTTSAFGVNQLRRRAGIERCMSCVENDHGSV
VLCNACQTQKPFTDFSKKQLACKPGRSRCKACIASGPE*
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mRNA from alignment at L-elsbetiae_contig15178:169..585-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15178.3698.1 ID=mRNA_L-elsbetiae_contig15178.3698.1|Name=mRNA_L-elsbetiae_contig15178.3698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=417bp|location=Sequence derived from alignment at L-elsbetiae_contig15178:169..585- (Laminarionema elsbetiae ELsaHSoW15)
GGCTCCGTTTCAGGCGGCGCTATCACGTGCACTCTCTGCGACCAGGTGAA
GCCGGTTTCCGAGTACTCCCGCAACCAGGTCTCCCGCTTTGGGAGGGAGG
TGTGCCAGCGGTGCCTCATGAGAGAGGGGGCGGCGGCGGCACCGCCGACC
CACATCGCGCCCGCCGCGGGGGAGGGCTTCGTCCGCTGCGTGGCCTGCTG
CCAGCTCAAGACCACCTCGGCCTTCGGCGTGAACCAGCTCCGCCGCAGGG
CGGGCATCGAGCGCTGCATGTCGTGCGTGGAGAATGACCACGGATCGGTG
GTGCTCTGCAACGCCTGTCAAACGCAGAAGCCGTTCACGGACTTCAGCAA
GAAGCAGCTGGCGTGCAAGCCCGGCAGGAGCAGGTGCAAGGCCTGCATCG
CCTCCGGGCCCGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15178:169..585-

>mRNA_L-elsbetiae_contig15178.3698.1 ID=mRNA_L-elsbetiae_contig15178.3698.1|Name=mRNA_L-elsbetiae_contig15178.3698.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig15178:169..585- (Laminarionema elsbetiae ELsaHSoW15)
GGCTCCGTTTCAGGCGGCGCTATCACGTGCACTCTCTGCGACCAGGTGAA
GCCGGTTTCCGAGTACTCCCGCAACCAGGTCTCCCGCTTTGGGAGGGAGG
TGTGCCAGCGGTGCCTCATGAGAGAGGGGGCGGCGGCGGCACCGCCGACC
CACATCGCGCCCGCCGCGGGGGAGGGCTTCGTCCGCTGCGTGGCCTGCTG
CCAGCTCAAGACCACCTCGGCCTTCGGCGTGAACCAGCTCCGCCGCAGGG
CGGGCATCGAGCGCTGCATGTCGTGCGTGGAGAATGACCACGGATCGGTG
GTGCTCTGCAACGCCTGTCAAACGCAGAAGCCGTTCACGGACTTCAGCAA
GAAGCAGCTGGCGTGCAAGCCCGGCAGGAGCAGGTGCAAGGCCTGCATCG
CCTCCGGGCCCGAGTGAGGCTCCGTTTCAGGCGGCGCTATCACGTGCACT
CTCTGCGACCAGGTGAAGCCGGTTTCCGAGTACTCCCGCAACCAGGTCTC
CCGCTTTGGGAGGGAGGTGTGCCAGCGGTGCCTCATGAGAGAGGGGGCGG
CGGCGGCACCGCCGACCCACATCGCGCCCGCCGCGGGGGAGGGCTTCGTC
CGCTGCGTGGCCTGCTGCCAGCTCAAGACCACCTCGGCCTTCGGCGTGAA
CCAGCTCCGCCGCAGGGCGGGCATCGAGCGCTGCATGTCGTGCGTGGAGA
ATGACCACGGATCGGTGGTGCTCTGCAACGCCTGTCAAACGCAGAAGCCG
TTCACGGACTTCAGCAAGAAGCAGCTGGCGTGCAAGCCCGGCAGGAGCAG
GTGCAAGGCCTGCATCGCCTCCGGGCCCGAGTGA
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