mRNA_L-elsbetiae_contig15175.3697.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15175.3697.1
Unique NamemRNA_L-elsbetiae_contig15175.3697.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Match: D7FM53_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM53_ECTSI)

HSP 1 Score: 138 bits (348), Expect = 2.200e-41
Identity = 66/73 (90.41%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:    1 LQDVDIVFAYASKFSTERGIYLTELSRKLLDLKSGAKVITVDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ 219
            + DVDIVFAYA+K+STERGIYLTELSRKLLDLKSGA+V+T+DKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ
Sbjct:    7 VSDVDIVFAYATKYSTERGIYLTELSRKLLDLKSGARVVTIDKRLQGPFNLISTVLDPNGDLQTSTGFLWQRQ 79
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BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Match: A0A6V1MPI0_HETAK (Histone-lysine N-methyltransferase, H3 lysine-79 specific n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1MPI0_HETAK)

HSP 1 Score: 85.5 bits (210), Expect = 3.620e-18
Identity = 39/72 (54.17%), Postives = 57/72 (79.17%), Query Frame = 1 
Query:    1 LQDVDIVFAYASKFSTERGIYLTELSRKLLDLKSGAKVITVDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 216
            + + D++FAY+SK+    GIYLTELS+KL + KSGAK+IT+D+RL+GPF L+  + DPNGDLQ   G++++R
Sbjct:  254 VSEADVLFAYSSKYDAN-GIYLTELSQKLQECKSGAKIITIDRRLKGPFTLVRELDDPNGDLQRLRGYVFKR 324
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BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Match: A0A7S1XJM1_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XJM1_9STRA)

HSP 1 Score: 57.0 bits (136), Expect = 9.240e-8
Identity = 29/71 (40.85%), Postives = 49/71 (69.01%), Query Frame = 1 
Query:    7 DVDIVFAYASKFSTERGIYLTELSRKLLDL-KSGAKVITVDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 216
            + DI+FA+A++F++     LTE+S  L +  K GA++IT+D+RL+GPF L   + D  GDLQ + G+++ +
Sbjct:  263 EADIIFAFATRFASVSDT-LTEMSAVLAEYAKPGARIITLDRRLRGPFKLEREIDDLRGDLQLTRGYIYTK 332
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BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Match: A0A0G4EMU0_VITBC (DOT1 domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EMU0_VITBC)

HSP 1 Score: 52.4 bits (124), Expect = 3.800e-6
Identity = 28/73 (38.36%), Postives = 46/73 (63.01%), Query Frame = 1 
Query:    1 LQDVDIVFAYASKFSTERGIYLTELSRKLLDLKSGAKVITVDKRLQGP-FNLISTVLDPNGDLQTSTGFLWQR 216
            +Q  D++FAY+ +FS +      EL   +   KSGA+++TVD++L    F LI T+ DP+GDL    G++++R
Sbjct:  223 IQQADVLFAYSPRFSGK------ELLSTVEKAKSGARILTVDRKLASDGFELIKTLEDPSGDLNRYRGYVFRR 289
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BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Match: A0A7S2UU31_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UU31_9STRA)

HSP 1 Score: 52.4 bits (124), Expect = 4.120e-6
Identity = 28/72 (38.89%), Postives = 45/72 (62.50%), Query Frame = 1 
Query:    1 LQDVDIVFAYASKFSTERGIYLTELSRKLLDLKSGAKVITVDKRLQGPFNLISTVLDPNGDLQTSTGFLWQR 216
            L + D+VF   + + +++     +L      L+SGAK++TVDKRL   F LI+ V DP+GDL  +TGF++ +
Sbjct:  301 LSEADLVFVGPASYMSDK-----DLLPAFETLRSGAKIMTVDKRLGAGFALIAQVDDPSGDLVLNTGFVYTK 367
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15175.3697.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM53_ECTSI2.200e-4190.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6V1MPI0_HETAK3.620e-1854.17Histone-lysine N-methyltransferase, H3 lysine-79 s... [more]
A0A7S1XJM1_9STRA9.240e-840.85Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A0G4EMU0_VITBC3.800e-638.36DOT1 domain-containing protein n=2 Tax=Vitrella br... [more]
A0A7S2UU31_9STRA4.120e-638.89Hypothetical protein n=1 Tax=Attheya septentrional... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15175contigL-elsbetiae_contig15175:3195..3811 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010680.1
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5796332-CDS-L-elsbetiae_contig15175:3194..33051622815617.5796332-CDS-L-elsbetiae_contig15175:3194..3305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15175 3195..3305 +
1691682994.0600026-CDS-L-elsbetiae_contig15175:3194..33051691682994.0600026-CDS-L-elsbetiae_contig15175:3194..3305Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15175 3195..3305 +
1622815617.5924108-CDS-L-elsbetiae_contig15175:3700..38111622815617.5924108-CDS-L-elsbetiae_contig15175:3700..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15175 3701..3811 +
1691682994.071647-CDS-L-elsbetiae_contig15175:3700..38111691682994.071647-CDS-L-elsbetiae_contig15175:3700..3811Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15175 3701..3811 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15175.3697.1prot_L-elsbetiae_contig15175.3697.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15175 3195..3811 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15175.3697.1

>prot_L-elsbetiae_contig15175.3697.1 ID=prot_L-elsbetiae_contig15175.3697.1|Name=mRNA_L-elsbetiae_contig15175.3697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=74bp
LQDVDIVFAYASKFSTERGIYLTELSRKLLDLKSGAKVITVDKRLQGPFN
LISTVLDPNGDLQTSTGFLWQRQ*
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mRNA from alignment at L-elsbetiae_contig15175:3195..3811+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15175.3697.1 ID=mRNA_L-elsbetiae_contig15175.3697.1|Name=mRNA_L-elsbetiae_contig15175.3697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=617bp|location=Sequence derived from alignment at L-elsbetiae_contig15175:3195..3811+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCAGGACGTCGACATCGTTTTCGCGTACGCGAGTAAATTCTCAACCGA
GCGAGGCATTTACCTCACTGAACTTTCTCGGAAACTTCTCGACCTCAAGT
CCGGCGCGAAGGTGATCATGGAGTTTCAACGCGAGGGCTTTACTTCGTAC
ATATGTGGCAATGAGGTGTCCTCATCAGCCTGAAAACAATATCTGAGACT
TTCGTTGTGCTGTTTTTTTTAAGTCGGCAACCTGTTGTTGCTGTCATCGG
GGACTATTGTGGTGTGCTTTAAAATCGGCAACTTGTTGTCGCTGTCATAG
GGAAAGGGCATTTCAGTACAAAGACTGGTGAAAAGCTCCCAGGAAATTTC
TCCAAGGGCAGAGAGACAGACCGCCCAAGTGCCGTTCTCGGCCATGCTTG
CGAGTGCGGTGCTGCTTCTTGTGCTTGTTCTTTCTTCCTTCCTCTAACGT
AGAGAAAACATCGCCGCTTTTCCCCCGCCGTTTTCTCTGATGCTGTGCAC
CTTCAGGTGATCACCGTCGACAAGCGACTGCAGGGGCCGTTCAACCTGAT
CTCGACCGTCCTCGACCCGAATGGCGACTTGCAGACCTCGACGGGGTTCC
TGTGGCAGCGTCAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15175:3195..3811+

>mRNA_L-elsbetiae_contig15175.3697.1 ID=mRNA_L-elsbetiae_contig15175.3697.1|Name=mRNA_L-elsbetiae_contig15175.3697.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=444bp|location=Sequence derived from alignment at L-elsbetiae_contig15175:3195..3811+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCAGGACGTCGACATCGTTTTCGCGTACGCGAGTAAATTCTCAACCGA
GCGAGGCATTTACCTCACTGAACTTTCTCGGAAACTTCTCGACCTCAAGT
CCGGCGCGAAGCTGCAGGACGTCGACATCGTTTTCGCGTACGCGAGTAAA
TTCTCAACCGAGCGAGGCATTTACCTCACTGAACTTTCTCGGAAACTTCT
CGACCTCAAGTCCGGCGCGAAGGTGATCACCGTCGACAAGCGACTGCAGG
GGCCGTTCAACCTGATCTCGACCGTCCTCGACCCGAATGGCGACTTGCAG
ACCTCGACGGGGTTCCTGTGGCAGCGTCAGTGAGTGATCACCGTCGACAA
GCGACTGCAGGGGCCGTTCAACCTGATCTCGACCGTCCTCGACCCGAATG
GCGACTTGCAGACCTCGACGGGGTTCCTGTGGCAGCGTCAGTGA
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