mRNA_L-elsbetiae_contig1517.3693.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1517.3693.1
Unique NamemRNA_L-elsbetiae_contig1517.3693.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1517.3693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1517contigL-elsbetiae_contig1517:4533..9101 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size837
Cds size609
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1517.3693.1prot_L-elsbetiae_contig1517.3693.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1517 5816..9101 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.264314-UTR-L-elsbetiae_contig1517:4532..47471622815617.264314-UTR-L-elsbetiae_contig1517:4532..4747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 4533..4747 +
1691682993.8813584-UTR-L-elsbetiae_contig1517:4532..47471691682993.8813584-UTR-L-elsbetiae_contig1517:4532..4747Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 4533..4747 +
1622815617.275704-UTR-L-elsbetiae_contig1517:5804..58151622815617.275704-UTR-L-elsbetiae_contig1517:5804..5815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 5805..5815 +
1691682993.8958886-UTR-L-elsbetiae_contig1517:5804..58151691682993.8958886-UTR-L-elsbetiae_contig1517:5804..5815Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1517 5805..5815 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.2901642-CDS-L-elsbetiae_contig1517:5815..62101622815617.2901642-CDS-L-elsbetiae_contig1517:5815..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 5816..6210 +
1691682993.904925-CDS-L-elsbetiae_contig1517:5815..62101691682993.904925-CDS-L-elsbetiae_contig1517:5815..6210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 5816..6210 +
1622815617.3021607-CDS-L-elsbetiae_contig1517:6434..64751622815617.3021607-CDS-L-elsbetiae_contig1517:6434..6475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 6435..6475 +
1691682993.91303-CDS-L-elsbetiae_contig1517:6434..64751691682993.91303-CDS-L-elsbetiae_contig1517:6434..6475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 6435..6475 +
1622815617.314522-CDS-L-elsbetiae_contig1517:7344..74031622815617.314522-CDS-L-elsbetiae_contig1517:7344..7403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 7345..7403 +
1691682993.9234889-CDS-L-elsbetiae_contig1517:7344..74031691682993.9234889-CDS-L-elsbetiae_contig1517:7344..7403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 7345..7403 +
1622815617.3294775-CDS-L-elsbetiae_contig1517:8987..91011622815617.3294775-CDS-L-elsbetiae_contig1517:8987..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 8988..9101 +
1691682993.931246-CDS-L-elsbetiae_contig1517:8987..91011691682993.931246-CDS-L-elsbetiae_contig1517:8987..9101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1517 8988..9101 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1517.3693.1

>prot_L-elsbetiae_contig1517.3693.1 ID=prot_L-elsbetiae_contig1517.3693.1|Name=mRNA_L-elsbetiae_contig1517.3693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
MGAVREHLTNASDKLILAFADLKAVDEEVASLTAGPDGIPLSEAAARVLQ
GAKMAASVASKVLRAAELAEAAAGEAAAVITAAREAKVEAEKATAAVAQA
MAVAAQKVEAAALAAAALEVKVHPSPLLDDHKWLQSDVGGISGGQDSGPS
GGAIVDNGRATVAVKMAPGGDERDEQEQVMAEEEKSEAKNKETSEEEDEK
ECG
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mRNA from alignment at L-elsbetiae_contig1517:4533..9101+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1517.3693.1 ID=mRNA_L-elsbetiae_contig1517.3693.1|Name=mRNA_L-elsbetiae_contig1517.3693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=4569bp|location=Sequence derived from alignment at L-elsbetiae_contig1517:4533..9101+ (Laminarionema elsbetiae ELsaHSoW15)
GAGCCAGCCCAACACCGGGGCCTTTGCAAGCACGAACTTGGTATTTTGAG
ATTGACACGGTTCCCCACCGGGTGCTGCTTGTCTCATAAAATAGGTTGCA
CATCTCACATTTCGGGACTCTGCGGCAAGCATAACCGGCCGCTCTGACAC
TCCCACGCATTGAGCCGACTCTGCTGCAGGAGGCACTGCCGTGCTGCCAT
CTCCCCATTCACAAGGTGAGGAATCGACCGTGATACCGCCTGTGCTAGAC
CCCACGTCACTCAAAACGACGCACCCACCCCTTTCGTGTGGTGTATCTAG
GCTTCTGTTGAGTTGCCGAGCAAGGCCAACGCTACAATATACATGCACGT
ACATAGCAGGATCTCTGTTCACGACCTACACAGGATAAAGGGTTCCTAAG
GTGTGAGAAAAAAGGTTGCATGCATTCAGAAGGCCGAAGAACCTCATACC
CTAACCATAACCCTAACCTTCGCCTGTCGTCTTCACTACATATGCAGCTA
CCGTAGATGACACAAGATACCACACCCCCTTGGATCTACTTTTAGAGCTC
CATTACTCCGTAACGAAGAGAGTGCCAGCACAAAACGACAATTTTTCGGA
CAGCCTTCGATCCCATACACCTTTTCAACGCCACCCCCTCTTGGCACTGG
CACTCTTCTTGCTGGGGAGGAATCGAGCTTTGAACATATGTCCAGGGGGC
GTGGTATCTTGTGTCACCTACGGTAGACGTACTATTCTCAAATTTGGCTG
CTGGTGCCGTATACCGTTACCAAAGCTGGCTGTGCCAGGTACAGGTAGGG
GTTAGGGGAACCCAGGAGGGCGCTTTGAGGGACAGGACACAGAGGCTGAT
GTGGCTCATGCAACATGCACCCTCTTCCAATCCTTGCGGGTTTAGACGTG
CTGGCGACCCACGGACACGACTTTCAAGGATTTTCGTATGTCTGGATGTT
TTTTTGGGGTTGCACTACAGGCAATGCTTTGGTGTTGCGGGTATATCCCC
CCACATTGGCTATCGAGCACTAGAAGGTTAAACCTCTTCCGCTTGGGGGC
TCTCTCGCCGGGTTACAGAGACAAAGTCTGCAGGCCTCTGAATATCGTGC
TACATGCAGTGGACTGACGCCTGGACGTGATGTGACTGATACTTACGTCA
ACCAACTTCACGGTCTTGACGCTACACAACTTTGGGTAACTTCAAACACT
GAGCACTAGAATACGGTAAGTTAACGTTCCCGCCTCCCGCGCCCTCCCTC
CCCCGGATGTATGCATACAAAGATCGTGTGAAAATGGGAGCAGTGCGGGA
GCACCTCACGAATGCGTCGGACAAGCTCATACTTGCCTTTGCCGACCTTA
AAGCCGTTGATGAAGAAGTCGCATCTCTTACTGCCGGCCCGGATGGGATA
CCTCTGTCGGAAGCGGCCGCGAGGGTACTGCAGGGGGCTAAAATGGCGGC
CTCAGTGGCATCGAAGGTCTTGAGAGCAGCGGAGTTAGCAGAGGCGGCGG
CCGGCGAAGCAGCGGCGGTGATAACAGCGGCCCGAGAAGCGAAGGTGGAG
GCAGAAAAGGCGACGGCAGCAGTTGCCCAGGCGATGGCGGTAGCGGCTCA
GAAGGTGGAAGCGGCGGCACTAGCAGCAGCAGCCTTGGAAGTGAAGGTCC
ACCCATCGCCTTTGCTGGATGACCACAAGTACGAAATTGGTTTGGTCGAT
TGAATATTGATGGCGGCTCAAAATGTTGTTTAGCCTCGCCTAGCACCTTG
AGGGCTATTGTTTTATGTAGGTGTTGATGGAACGGCTACCGGTGTACAAC
TTCTGTTTTTGGGCAACTACTGTGATTCTCCGTGAACCGCTGCTCCTGTC
GTGTTCGTGCCGTAACCATGGACCATTCTTCGCGATCGTGTGGTGCGTAC
AGGTGGTTGCAAAGCGACGTTGGCGGCATTAGCGGGGGACAAGGTAAGGA
CGTATGTAGGGGTAGCTGGAAAGGGATAATAGGGAACGGAGGGCTTGCGA
TGCCGGAGAGAGAGAGGCGGTGGATGTTGGTGTTGTTTTCTTCACATTGA
AAACCGTTACTATCTCTCCATCCAGTACCTCCGTACGTCCATACTATTCA
AACACTCGACGCGGTCGATTCCTGTAGTCACACGCTAACTAACTCTAAGC
AAGGGTATACTGAAATATGAAGAGGTGGGCCCGAAGGGTCAGCAAAGCAG
GAAAACAAAAGAACACAGGTAGTCTGGAGCCCTCCGCTCCCCTCTACACG
CTTTGTGAGGTAAAAACAAAAACTGGAACATCCAACATCCTATCTTGGTA
CCCCAACGCCAGGTTCTCGCCGGTCAGGCCGATTTACCTAGTCCTCCCCT
TTTATTATACCTCATAGATTGTACCAAAGAGGGGGAAAATAATCCGACCA
GATGTAAATCGGAAGTGCAAACAAACAAATAAACAAACACATGAAAAATA
AACCGCAGAAAGGATTAGTACCAAACACTCCGGGGGTGGTGCACGCTGGT
ACAGGGGGGGGGGTAGTCGGGATATCAGTCCGCAACATATTGCGCTGCTG
CCTCCTTCTCCGCCCTCTTGCATTCGCTGCGTGCAGTTTCGATTGTCTTC
GTCCCCGTTGGTCTGTTGGCCGTAGGTCCTTTATGTGCGTCTTAACAATG
AAAATACACTATCATTTTGCTGTATCGCCTGTACTCTTCGCACTTTGACT
CTACCGTCTCTCTCGCCTAGGGCAGTGCGCTCGCCCATTGGCGAACCTTC
GATACCGCTCGGAATGATGCGCGTTCGCCTATTTGTCCACCTTGTTGTCT
TGGTGTGTGCAGACTCTGGACCATCTGGTGGTGCGATAGTCGACAATGGC
CGCGCCACTGTGGCAGTCAAGGTAAGAGCTTTCAATGGCGAAGATCTATT
CCTTATTGTTTTGTTTTGTACAAAATTGAAGGCCTTAGGCATCTCCCTAC
ATAGAGACAGGAGCGTTGAAACGATGTTTTTTTCCTGAAGCGTCACATTT
GCTTGTATGGTTCGTGCATCCCAAACAATGCCAGCACTCTGGCACACGTT
TCTCGGCGCAGAGGTGGTTGTTCCGAAACTAAAAAAACAACCGCCAGCGC
CTTGTCTCGAGGCCGATCTCGTGACGGAGGGTACCCTTGTTTTCCTTCGA
AGAAGTAATAAATCATGATAAAACCGTGAAATGTCAATTACTTCGTCTTT
CTTTTTTTCACGAAAACTAGTCAAATTATTCAGAAAAAGGCTGCGGCATT
CGATCCTCAAGTATATTGTAGGCCAACTTGCATTTTATTGTATTCGGGTA
AACTGACCGATGGATTCCGAAAGGGTAAGCGGCAAACGGTTGCTCCCAAA
AATCCCCTGGTACGTTTTTGGGTGTGGGTGTGCCATCTTGAGCTCTAGTT
GTCGAGATATTCGTTTTTGTTTCAGAATAGGTTCCGTTGTTTCTCTTTGT
TTTCAGTTTTCTTTGTATTCAGTGTGTCGCTGCTCGAATGAGGAGTTGAA
ACTAGCATACTGCAATGACTCTTTTCCTCGAGCCCATATTTTTGTCCTTG
GACGGAGAACCTCTAGGATGGCTGAAACTCCGGCTAAATCGATGTGTCTT
AGGAGGAACGGCAGGGAACGTGGTTTGGACAATATTTGGTGCACGGACCG
CGAGGTATCTTTCAGTATAAGAATCTCCTACAAGCGCCCGAATGGCTCGC
ACAAGCGATAACATTTTCCCCGGAATTTACCCCGCCCCCTATCCTTCCGA
TTTTGTGCAATAGCCTTCCACTTTCTCCCTCTCTGTTTTCTGGTGATCAC
CAGCCCCCCGCATCGCTCGACTTCGTCCAGCGGGCTATACCACACACAGT
TTTTTTTTTTTATCGCTTTCCTGTCTCTATAGCCTTCATCTCATCATCTC
TGCGACGACTCCACTGCCCGAGTCCAAACGAAAAGAGCACGGTGCTTTCC
CCCCCGATAATCGGAGTGTCTGACCGCACTGCTACTGTGCAGTCAACCAT
ATTTTCACCAACTGTTGCTCTACTGCGTACTGCTCCTGCAAAGAGATGTG
TTTAGGCTCCTGCTGAAGGGTGATGTTCGGAAGTGTGCAGCAGTATGCAT
GTTCAAAAAACTCAACGGTCGTCAGCGTGTTTCCATTTGTCATATCTAGT
TATGTTGACCGATTTTTCCGACAACAGCAGCTCTACACAGGGTTATAGAC
GACTTCGTTGCCTTGAAATTTCGTCCACTGAAACGGAGGCCCAAAGCACG
CAAGACCTCGAGCATATATCGATTCAATTTTTGAAAATATTACACTGTTC
TGTGGTGGTAACTCCGGTGCAATTGGAGTTCCCGAGATTCTACCTGTTGG
GGGCGGGTCTCTTTAACTGTAGGTTAAAACTTTCGTTGGTCCCTCTCGAT
CGTCATCGTGCGTGTTGGCTTTGATGTACGATGTCTGATCAATATTCTCC
GACAGATGGCTCCTGGGGGGGATGAGAGAGACGAGCAGGAACAAGTGATG
GCGGAGGAGGAGAAATCTGAGGCGAAGAACAAGGAAACCTCTGAAGAGGA
AGACGAGAAGGAATGTGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1517:4533..9101+

>mRNA_L-elsbetiae_contig1517.3693.1 ID=mRNA_L-elsbetiae_contig1517.3693.1|Name=mRNA_L-elsbetiae_contig1517.3693.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig1517:4533..9101+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGAGCAGTGCGGGAGCACCTCACGAATGCGTCGGACAAGCTCATACT
TGCCTTTGCCGACCTTAAAGCCGTTGATGAAGAAGTCGCATCTCTTACTG
CCGGCCCGGATGGGATACCTCTGTCGGAAGCGGCCGCGAGGGTACTGCAG
GGGGCTAAAATGGCGGCCTCAGTGGCATCGAAGGTCTTGAGAGCAGCGGA
GTTAGCAGAGGCGGCGGCCGGCGAAGCAGCGGCGGTGATAACAGCGGCCC
GAGAAGCGAAGGTGGAGGCAGAAAAGGCGACGGCAGCAGTTGCCCAGGCG
ATGGCGGTAGCGGCTCAGAAGGTGGAAGCGGCGGCACTAGCAGCAGCAGC
CTTGGAAGTGAAGGTCCACCCATCGCCTTTGCTGGATGACCACAAATGGG
AGCAGTGCGGGAGCACCTCACGAATGCGTCGGACAAGCTCATACTTGCCT
TTGCCGACCTTAAAGCCGTTGATGAAGAAGTCGCATCTCTTACTGCCGGC
CCGGATGGGATACCTCTGTCGGAAGCGGCCGCGAGGGTACTGCAGGGGGC
TAAAATGGCGGCCTCAGTGGCATCGAAGGTCTTGAGAGCAGCGGAGTTAG
CAGAGGCGGCGGCCGGCGAAGCAGCGGCGGTGATAACAGCGGCCCGAGAA
GCGAAGGTGGAGGCAGAAAAGGCGACGGCAGCAGTTGCCCAGGCGATGGC
GGTAGCGGCTCAGAAGGTGGAAGCGGCGGCACTAGCAGCAGCAGCCTTGG
AAGTGAAGGTCCACCCATCGCCTTTGCTGGATGACCACAAGTGGTTGCAA
AGCGACGTTGGCGGCATTAGCGGGGGACAAGGTGGTTGCAAAGCGACGTT
GGCGGCATTAGCGGGGGACAAGACTCTGGACCATCTGGTGGTGCGATAGT
CGACAATGGCCGCGCCACTGTGGCAGTCAAGACTCTGGACCATCTGGTGG
TGCGATAGTCGACAATGGCCGCGCCACTGTGGCAGTCAAGATGGCTCCTG
GGGGGGATGAGAGAGACGAGCAGGAACAAGTGATGGCGGAGGAGGAGAAA
TCTGAGGCGAAGAACAAGGAAACCTCTGAAGAGGAAGACGAGAAGGAATG
TGGGATGGCTCCTGGGGGGGATGAGAGAGACGAGCAGGAACAAGTGATGG
CGGAGGAGGAGAAATCTGAGGCGAAGAACAAGGAAACCTCTGAAGAGGAA
GACGAGAAGGAATGTGGG
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