mRNA_L-elsbetiae_contig15162.3691.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15162.3691.1
Unique NamemRNA_L-elsbetiae_contig15162.3691.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15162.3691.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15162contigL-elsbetiae_contig15162:2982..3401 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size314
Cds size165
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15162.3691.1prot_L-elsbetiae_contig15162.3691.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15162 3131..3401 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.1568038-UTR-L-elsbetiae_contig15162:2981..31301622815617.1568038-UTR-L-elsbetiae_contig15162:2981..3130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15162 2982..3130 -
1691682993.8223238-UTR-L-elsbetiae_contig15162:2981..31301691682993.8223238-UTR-L-elsbetiae_contig15162:2981..3130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15162 2982..3130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.1675618-CDS-L-elsbetiae_contig15162:3130..31681622815617.1675618-CDS-L-elsbetiae_contig15162:3130..3168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3131..3168 -
1691682993.8328466-CDS-L-elsbetiae_contig15162:3130..31681691682993.8328466-CDS-L-elsbetiae_contig15162:3130..3168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3131..3168 -
1622815617.1801956-CDS-L-elsbetiae_contig15162:3251..33111622815617.1801956-CDS-L-elsbetiae_contig15162:3251..3311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3252..3311 -
1691682993.842237-CDS-L-elsbetiae_contig15162:3251..33111691682993.842237-CDS-L-elsbetiae_contig15162:3251..3311Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3252..3311 -
1622815617.190486-CDS-L-elsbetiae_contig15162:3334..34011622815617.190486-CDS-L-elsbetiae_contig15162:3334..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3335..3401 -
1691682993.853437-CDS-L-elsbetiae_contig15162:3334..34011691682993.853437-CDS-L-elsbetiae_contig15162:3334..3401Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15162 3335..3401 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15162.3691.1

>prot_L-elsbetiae_contig15162.3691.1 ID=prot_L-elsbetiae_contig15162.3691.1|Name=mRNA_L-elsbetiae_contig15162.3691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=55bp
FCFVVEQPPAASPPRLADDAGFVDCSGCEVQFGVSRIPYSWWARLIRIGI
AESK*
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mRNA from alignment at L-elsbetiae_contig15162:2982..3401-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15162.3691.1 ID=mRNA_L-elsbetiae_contig15162.3691.1|Name=mRNA_L-elsbetiae_contig15162.3691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig15162:2982..3401- (Laminarionema elsbetiae ELsaHSoW15)
TTTTGTTTTGTTGTCGAGCAGCCGCCGGCTGCCTCACCCCCTCGTTTAGC
CGACGACGCCGGTTTCGGTGTGCCACCGACCGCGTCGCAGTCGATTGTAG
TGGGTGCGAAGTACAATTTGGTGTCAGTCGTATACCATATTCTTGGTGGG
TTACATTATGTGACCCAGTTCAAGTTGCGGGGGAGCTGGTTTACGTACGA
TTGCTCGCACGGAGGCTCCACGACTCGGTCGGACTCGTTTGATCAGAATT
GGAATAGCGGAAAGCAAGTGATGTACGTACGTGTATGTGCGCGAGAGCTG
ATCCTTAGGCTTTTGTCGACATCAGCTCTGGCGTGGTGTCTTGTACGCAG
GTGGTAGCTCTTTAGGATGGGCGGGAAGTAATCCTTGGAGTGTTGTGCCT
CGCAATCTTGACGACAATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15162:2982..3401-

>mRNA_L-elsbetiae_contig15162.3691.1 ID=mRNA_L-elsbetiae_contig15162.3691.1|Name=mRNA_L-elsbetiae_contig15162.3691.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=330bp|location=Sequence derived from alignment at L-elsbetiae_contig15162:2982..3401- (Laminarionema elsbetiae ELsaHSoW15)
TTTTGTTTTGTTGTCGAGCAGCCGCCGGCTGCCTCACCCCCTCGTTTAGC
CGACGACGCCGGTTTCGTTTTGTTTTGTTGTCGAGCAGCCGCCGGCTGCC
TCACCCCCTCGTTTAGCCGACGACGCCGGTTTCGTCGATTGTAGTGGGTG
CGAAGTACAATTTGGTGTCAGTCGTATACCATATTCTTGGTGGGTCGATT
GTAGTGGGTGCGAAGTACAATTTGGTGTCAGTCGTATACCATATTCTTGG
TGGGCTCGTTTGATCAGAATTGGAATAGCGGAAAGCAAGTGACTCGTTTG
ATCAGAATTGGAATAGCGGAAAGCAAGTGA
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