mRNA_L-elsbetiae_contig1516.3689.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1516.3689.1
Unique NamemRNA_L-elsbetiae_contig1516.3689.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1516.3689.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1516contigL-elsbetiae_contig1516:10923..11802 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size656
Cds size507
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1516.3689.1prot_L-elsbetiae_contig1516.3689.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1516 11072..11802 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.0471418-UTR-L-elsbetiae_contig1516:10922..110711622815617.0471418-UTR-L-elsbetiae_contig1516:10922..11071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1516 10923..11071 +
1691682993.7610836-UTR-L-elsbetiae_contig1516:10922..110711691682993.7610836-UTR-L-elsbetiae_contig1516:10922..11071Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1516 10923..11071 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.0588257-CDS-L-elsbetiae_contig1516:11071..110781622815617.0588257-CDS-L-elsbetiae_contig1516:11071..11078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1516 11072..11078 +
1691682993.773659-CDS-L-elsbetiae_contig1516:11071..110781691682993.773659-CDS-L-elsbetiae_contig1516:11071..11078Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1516 11072..11078 +
1622815617.0722997-CDS-L-elsbetiae_contig1516:11302..118021622815617.0722997-CDS-L-elsbetiae_contig1516:11302..11802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1516 11303..11802 +
1691682993.784053-CDS-L-elsbetiae_contig1516:11302..118021691682993.784053-CDS-L-elsbetiae_contig1516:11302..11802Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1516 11303..11802 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1516.3689.1

>prot_L-elsbetiae_contig1516.3689.1 ID=prot_L-elsbetiae_contig1516.3689.1|Name=mRNA_L-elsbetiae_contig1516.3689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MASLGRGVRDPHGGPLQRGGKAGAWSPGFGCSKKGDRSTRLFHGSAGSAP
RPPLREWGERAPAEPGGGRQGPTRGSGRGLNWGDPHAGGTRSRGGTRDRS
GGERGTRPAAGRGLHSDVGDHGEPASGGGSLGPADGGGEPGQAGEAGQGV
YGHAGSAGQPLRGERKIF*
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mRNA from alignment at L-elsbetiae_contig1516:10923..11802+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1516.3689.1 ID=mRNA_L-elsbetiae_contig1516.3689.1|Name=mRNA_L-elsbetiae_contig1516.3689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=880bp|location=Sequence derived from alignment at L-elsbetiae_contig1516:10923..11802+ (Laminarionema elsbetiae ELsaHSoW15)
GGAAAATAACCATGATCCACGGAGCCCCGAAGGGGGGCCGCGGGACAGGA
CTAAGATGACTGGTAGAGAGGCTTGATCGAGCACCCACAGCAGCCAAGCC
TCCCTAACCCCAACGGAGTGAAAGCACGCGATAAGAACAACAGGTTACCA
TGGCCAGCCCCCAACTGAGCGATGCCCAGCTGGCGGCTGCCACCCCAGTC
GCCGACGGGACGGCGACACAAGCGCTCCCGTGTTTCGACCAGCCGGGTAC
TGGCACCCGTAACTCGCCAGCTCCCAACCGCCCGGAACTCGTTCTGACCC
GCGTGTACACGCGCGACAAAGAGTCCCTGCAGGGCAAAAGCACAGCTGCC
CTGCTCTTGCTGGCGATGCCGATCGTCAAGGCCTTGGGCGTGGCGTCAGA
GACCCACATGGAGGACCTCTTCAACGAGGGGGGAAAGCTGGAGCGTGGAG
CCCAGGGTTCGGATGTAGCAAAAAAGGCGATAGAAGCACGCGCCTTTTTC
ACGGAAGTGCTGGATCTGCTCCAAGGCCACCTTTACGTGAGTGGGGAGAA
CGTGCTCCTGCCGAGCCCGGCGGCGGCAGGCAAGGTCCCACTCGGGGGAG
CGGGCGCGGGCTCAATTGGGGCGACCCCCACGCCGGCGGCACCCGTAGTC
GCGGCGGCACCCGTGATCGCTCCGGCGGCGAACGTGGCACCCGCCCTGCC
GCCGGCCGCGGCCTCCACTCCGACGTTGGGGACCACGGCGAGCCCGCCTC
CGGCGGCGGTTCCCTCGGCCCAGCAGACGGCGGCGGCGAACCAGGCCAAG
CAGGCGAAGCAGGACAAGGAGTATATGGGCATGCTGGAAGCGCAGGGCAG
CCACTCCGAGGTGAGAGAAAAATATTTTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1516:10923..11802+

>mRNA_L-elsbetiae_contig1516.3689.1 ID=mRNA_L-elsbetiae_contig1516.3689.1|Name=mRNA_L-elsbetiae_contig1516.3689.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig1516:10923..11802+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCAATGGCCAGCCTTGGGCGTGGCGTCAGAGACCCACATGGAGGAC
CTCTTCAACGAGGGGGGAAAGCTGGAGCGTGGAGCCCAGGGTTCGGATGT
AGCAAAAAAGGCGATAGAAGCACGCGCCTTTTTCACGGAAGTGCTGGATC
TGCTCCAAGGCCACCTTTACGTGAGTGGGGAGAACGTGCTCCTGCCGAGC
CCGGCGGCGGCAGGCAAGGTCCCACTCGGGGGAGCGGGCGCGGGCTCAAT
TGGGGCGACCCCCACGCCGGCGGCACCCGTAGTCGCGGCGGCACCCGTGA
TCGCTCCGGCGGCGAACGTGGCACCCGCCCTGCCGCCGGCCGCGGCCTCC
ACTCCGACGTTGGGGACCACGGCGAGCCCGCCTCCGGCGGCGGTTCCCTC
GGCCCAGCAGACGGCGGCGGCGAACCAGGCCAAGCAGGCGAAGCAGGACA
AGGAGTATATGGGCATGCTGGAAGCGCAGGGCAGCCACTCCGAGGTGAGA
GAAAAATATTTTAGGCCTTGGGCGTGGCGTCAGAGACCCACATGGAGGAC
CTCTTCAACGAGGGGGGAAAGCTGGAGCGTGGAGCCCAGGGTTCGGATGT
AGCAAAAAAGGCGATAGAAGCACGCGCCTTTTTCACGGAAGTGCTGGATC
TGCTCCAAGGCCACCTTTACGTGAGTGGGGAGAACGTGCTCCTGCCGAGC
CCGGCGGCGGCAGGCAAGGTCCCACTCGGGGGAGCGGGCGCGGGCTCAAT
TGGGGCGACCCCCACGCCGGCGGCACCCGTAGTCGCGGCGGCACCCGTGA
TCGCTCCGGCGGCGAACGTGGCACCCGCCCTGCCGCCGGCCGCGGCCTCC
ACTCCGACGTTGGGGACCACGGCGAGCCCGCCTCCGGCGGCGGTTCCCTC
GGCCCAGCAGACGGCGGCGGCGAACCAGGCCAAGCAGGCGAAGCAGGACA
AGGAGTATATGGGCATGCTGGAAGCGCAGGGCAGCCACTCCGAGGTGAGA
GAAAAATATTTTAG
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