mRNA_L-elsbetiae_contig15150.3687.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15150.3687.1
Unique NamemRNA_L-elsbetiae_contig15150.3687.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15150.3687.1 vs. uniprot
Match: D7FX64_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FX64_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 4.520e-12
Identity = 39/62 (62.90%), Postives = 44/62 (70.97%), Query Frame = 1 
Query:    1 AAALLGVGRVGKLEPFAVLLVSLLSSEVLHSSFFSQTEDDLQQVDRKPYEEEIRELLFQNDP 186
            AA LL  G+   +EPFAVL VSLL S+ L S+ FS  + D   V RKPYEEEIRELLFQNDP
Sbjct:   55 AAVLLAAGKGFGVEPFAVLTVSLLVSKALCSNAFSGNKPDDDPVPRKPYEEEIRELLFQNDP 116
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15150.3687.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FX64_ECTSI4.520e-1262.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15150contigL-elsbetiae_contig15150:1552..4127 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-10_004450.1
Exons2
Model size192
Cds size192
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815616.942705-CDS-L-elsbetiae_contig15150:1551..16771622815616.942705-CDS-L-elsbetiae_contig15150:1551..1677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15150 1552..1677 +
1691682993.713693-CDS-L-elsbetiae_contig15150:1551..16771691682993.713693-CDS-L-elsbetiae_contig15150:1551..1677Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15150 1552..1677 +
1622815616.9540284-CDS-L-elsbetiae_contig15150:4061..41271622815616.9540284-CDS-L-elsbetiae_contig15150:4061..4127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15150 4062..4127 +
1691682993.7263284-CDS-L-elsbetiae_contig15150:4061..41271691682993.7263284-CDS-L-elsbetiae_contig15150:4061..4127Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15150 4062..4127 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15150.3687.1prot_L-elsbetiae_contig15150.3687.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15150 1552..4127 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15150.3687.1

>prot_L-elsbetiae_contig15150.3687.1 ID=prot_L-elsbetiae_contig15150.3687.1|Name=mRNA_L-elsbetiae_contig15150.3687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=64bp
AAALLGVGRVGKLEPFAVLLVSLLSSEVLHSSFFSQTEDDLQQVDRKPYE
EEIRELLFQNDPR*
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mRNA from alignment at L-elsbetiae_contig15150:1552..4127+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15150.3687.1 ID=mRNA_L-elsbetiae_contig15150.3687.1|Name=mRNA_L-elsbetiae_contig15150.3687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2576bp|location=Sequence derived from alignment at L-elsbetiae_contig15150:1552..4127+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCTTTGCTTGGCGTGGGCAGGGTGGGAAAACTGGAGCCGTTCGC
GGTGCTGCTTGTGTCGCTGCTGTCCTCCGAGGTCCTGCACTCGAGTTTCT
TCAGCCAGACAGAGGATGACCTTCAGGTGGGCGAACGAAGTGATCGGTAC
ATAGAAGTATGTCCTCCTGTGTGGCCCCGGTTTGGTCGTCTAGTCAGTCG
TAGTGGAGGAAGGGGGGCCAGTGGGGCAGACGACGAATAAGCCAACTATT
GGGAGGAAGAACAAAAATACAAAAACATGTAAGATGTTGATGACGTCAAA
TCCAATCGTCGCTGTCGTTTTTCTCACGCGCGGGGTGTTTTTGGTGGCGA
GCTTTATGTTTTAAGCCGTGACTGCTCTGGGTCTCACCAGCCCTGTGGTA
GCATCTACCCCCTGCTACCCCCTGCTGCCTGCATCCTGTAGGGATAGCTA
GACAAGGCAGCATTGACTGGTTGACAGGCAGGTCGGCAGAGAGAAGAGTT
GTTTGACCAGGCAGAGATGCGGGGGAGATGGTGAGATCTCCTTTTATTCT
AGGTGCTTTTTCTACCCGGCCGGCCCAATATGACGTCACTATATGGAATA
CCGACTGAACCTCACGGAGTCCCGTCTCAATGTGGGTGAGGTTCCATTTT
TGATTATTTAACTGTTTCTCTTTCAAAGCGTTCGTGCGCCTGCTGGTGCG
GTGCCCGCCTTGGGTGGTTGCAGCCCGCCCGTGTACCTGCTGCGCTGCTG
CGGAGGAAGGAGCACATGGCGGTGATGGGGGCGTGGTACCGACGCGGTGC
GGCGCGCGGCTGTGATGTGACATGACACTAAGGAGTGGGTGACGTTGCAA
AAATAATGAGGTCGCCGCCGCGACCCGCCGCCTCTCCGAAGCCGTTGTCG
TTGCGAAGCAAACACGGAGCCCCTTTTTGGAGATAGCAAGATCGGCCTTG
AGTGTGCGTGAAGTCTTTTTTTCAGCGAACGGTGGCTGTTCAGGGTGTAG
GTGTTGGTGTTGGGCACGGAGACCCTACGGCACGTGCCGGATGGGGGGCC
GGCACATGGAGCGAACGGAGGACGAAGGCTAACCAGTGTTATTTGAACTA
AATTTCAAGGGGGCTCATGTGCGGGAGATTTTTAAGAAGGCGCCTTCCGT
CAAGGCCAAAAGGCACAGGGCCTCAGTATACCCCACGCACCAAGAAGCCG
ATATCTCAGGTTGCAGGAAGTGACCCAAAACGAAACTTTGAGGCTGTGTA
GTAGAGATGTGTGACTATAGAGCGGGCCAAAAATCTAGGTGGTGGCTCTT
GCACTGCATTTAGAGGTGCCATCGCAAAAAAATGATAGGGAAGAGAGAGG
GAGAGTCGAAAAAAGAGAGCCAACTGCGAGACAGACGAGCACGATTTCTA
TACAAAACGTAGCTTTTTGGTCCCTGAAGAGATCCATCGCAAGACCGCGC
ACGTTGGCAAGAGGAGGGTCTAAAGTGTGCAGAGCACCCGCTGAAATGAG
CTAACTCGTTGCGCTGCAATTAGACGAGCTGCTGCCGTCTGCTGCTGCTG
GCCTGGCCGAGGGCACCAGCGTGTGCGGGAAGGCAGCTCTGATTCGATTC
TCACAAAGCGATTCTGAGTTTAAAATCTGCGCCGGCACTAGCTATGAGTA
GCATATCGCACCCCCTCTAGTCTGTTTGGTCTGGGATGGGTTGTGTAAGC
TCCTAGGGATGGCGTAGTCAGTGTAGCCATGAGAGAGCGGGGGCTTTTGG
TGGGGGGGTCTTTAATGCGCGTGCCTTTTGTCTGCGAGTCCCCGACGAAC
TTGTTATCGGTGTAAATCATCCCCACGCCGCGGCTTGAGCATCGATTCGC
TTCGTTCTTTTTCCTACACCCTCGAGAAGTACAGGAGCTGCAGGCCTGTT
CTTTCCCCACCATGAGCACGGCGCTCTGCGGCAAGAACTCGAAGTCAAGG
AGCGCAACAAGTGCCTCCTTAAAATTTAATCCAAATAACACTGTAACAAC
GCGCCCCCTCTCCGCCCCGTAAGGCCCTGCAATTGCTTGTCGGGATATAT
CTATGGTCCGTGCACGACAGTTTGTCTAATCGCGTTTTGTGCGATAACCT
TAGTTAGAAAAACACCGGGAACGTGAAACAACGATATTCGTGACCATACA
TACATACATTCGTATATACGTACACATGCATTTTTTTTTTTTCGCCCATC
ATTGGCGTATTTGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTCGCTAG
ACGACCCGACCGGGGTCACACAGGAGGGGGGGTTGGACCCCCTCCTGCGG
TGCCTGCCATGTATGTTTTTATCGCGAGCAGGGTTCAACACACCCCACCC
TCGTTAACCATGAAGTCGAAGTATTATATTTATACATTCGTTTATATTAT
ATACATAAATACGAGGCCCCATTTTCCCCGGGATTACATGTACGGGGGCC
ATGAAGAATAAATAAGTACAACGATGCCCCCCCCCCCCCCCCCCCCGGAA
CTCCCTTAAGCAGGTGGATCGAAAGCCGTACGAGGAGGAAATCAGGGAAT
TGCTCTTCCAAAATGACCCCAGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15150:1552..4127+

>mRNA_L-elsbetiae_contig15150.3687.1 ID=mRNA_L-elsbetiae_contig15150.3687.1|Name=mRNA_L-elsbetiae_contig15150.3687.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=384bp|location=Sequence derived from alignment at L-elsbetiae_contig15150:1552..4127+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCGGCTTTGCTTGGCGTGGGCAGGGTGGGAAAACTGGAGCCGTTCGC
GGTGCTGCTTGTGTCGCTGCTGTCCTCCGAGGTCCTGCACTCGAGTTTCT
TCAGCCAGACAGAGGATGACCTTCAGGCGGCGGCTTTGCTTGGCGTGGGC
AGGGTGGGAAAACTGGAGCCGTTCGCGGTGCTGCTTGTGTCGCTGCTGTC
CTCCGAGGTCCTGCACTCGAGTTTCTTCAGCCAGACAGAGGATGACCTTC
AGCAGGTGGATCGAAAGCCGTACGAGGAGGAAATCAGGGAATTGCTCTTC
CAAAATGACCCCAGGTGACAGGTGGATCGAAAGCCGTACGAGGAGGAAAT
CAGGGAATTGCTCTTCCAAAATGACCCCAGGTGA
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