mRNA_L-elsbetiae_contig1515.3685.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1515.3685.1 vs. uniprot
Match: D8LU63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU63_ECTSI) HSP 1 Score: 348 bits (894), Expect = 1.000e-100 Identity = 491/1132 (43.37%), Postives = 568/1132 (50.18%), Query Frame = 1 Query: 1 MVKASGGRSKGKGSGXXXXXXLAPASPTRRLKKGGKRGRRLCHMDGCSLCPSFGFEGDVAVSCSHHKDDGMRNLTARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRNKPRGSESLLSGVPVARSSRRAAKAQAA------------KXXXXXXXXXXXXXXXXXXXXXXARSRSSSASKDLLLRTAKVKRDGGTGQDXXXXXXXXXRR---PAVAVARVWSGGQRRASFRNGNSSDGDEASAAAAADPECGPAKTGEQPASAAKLPSLL-------------------VPFAARGNDVEAAATADRAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAAVTAGVLHRHEAAFLSVSRRCREVDDFQRRRAGGGEGGMLLGGQAAGAGATGAGRACGMEMALGLHEDSERRGVVD---------SGSFLTAGGSFLGKNEGGXXXXXXXXXXXXXIGQEGLRSMLLGTAADSPEANPGVADD--EFAARSSKG--SRTLGGVQV--------------SSREASRRGRPTAASGSFES--VIPGGGGXGEAGGPA-GVFIDFGLDHLPELNSNDLTGL---RDGGASAHVPRQT-QHXXXXXXXXXXXXXXXXXXXXXQHATSR-EYDAAAPAAPGSNFQSFVGVRRGSGTSSLLAPSSAGSDDLSSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDDALMPAKMPTA----DEAWWDILEGEEFVAMPEPAWEVALETRQQSMEQETLQGS-------NIGDARGRQRTAAAAGARAWAGNGMADSEKKSSPAIGDDKFGSSDRLGGRGGCGATPGGGAKARYWMS---------SSTAGLGGVLTVPGDEEFAGDGSSGGNRGRNGEADHLGGTAHCVGGSAVGSVSGGGGCGGEGGDRSGRLSPATKKFAXXXXXXXXXRENSTAFDTFPLPFGPGALPT-SRAVRPRE-QLGPSSP------GGIFSSAASSSPNGIYPAASAAAAASAAAPVGFGLTITPLGGGHQQILLPHGGAGLGSAGGGS------LSRTWIAGGAWA-------AGDAGTLSPSKCLSLSPSKGIE-MSTTPSSRSAVQT-------PWGAGPLCSPQQTQAAGLA 3042 MVK+SGGR KG GSG AP+SPTRRLKKGGKRGRRLCHM+GC+LCPSFGFEGDVAVSCSHHK+DGMRNLTARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRNKPRGSE +LSG+ V+RSSRRA KA A XXXXXXXXXXXXXXXXXX AR+++SS KDLL+RTA + D G G+ PAVA SG +RR S+R+ +SDGDE + E G + G S A V F ARG+ VEAA AA XXXXXXXXX A +TAGVL +H+ AF+ VSR GGML + R VD GSFL GGSF G+ GG G+ LRS+LLG A D+PE VAD FA SS ++ GVQ ASR G A SFES + GGG A PA GVF+DFGLDHLPEL+SND GL G + ++PR T QH Q SR YD A A F S GVR GS +S+ XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX +EAWW++LEGEEFVAMPEP W A QSM +E + + + G RG T GMA+S + G G G T A +S ++ AGLGGV+ +PGDE F+GD S + GRNG V +SGGGG GG RL P++KKFA + AF T P PGA P SRA+RP +LG +S G +FS AASSSPNG+YP +GFGL + H Q LPHGGAGL SAG GS LS+ W+ G WA +GDA +SPSKCLSLSP+K + M+ +PSS S + PWG GPLCSPQQT+AA A Sbjct: 1 MVKSSGGRWKGSGSGS------APSSPTRRLKKGGKRGRRLCHMEGCTLCPSFGFEGDVAVSCSHHKEDGMRNLTARRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNRNKPRGSEGMLSGMTVSRSSRRATKASIAIASSNXXXXXXXXXXXXXXXXXXXXXXXXXXSGGLARNQASSGGKDLLMRTA-MSGDVGLGRHGAFGNGAKTHAAVAPAVASRARASGTRRRGSYRDSTTSDGDEKA-------ELGRSFFGGGNHSNAXXXXXXXXXXXXXXXXXXXXXXXXXVAFIARGDGVEAANAPSDAARAXXXXXXXXXRPRGASRGLGS--------ATITAGVL-QHQEAFMPVSR----------------GGGMLP-----------------VVETXXXXXXXXXRVAVDISFRGDTRMDGSFLMDGGSF-GETSGGAGGASLGAGVD--TGRAELRSILLGDAGDTPEVRDSVADGGLSFAVPSSSARVAKPAPGVQAVHEALRPAGGLGFGRDSAASRGGEHAGARSSFESGGSLASGGGTAPAPAPAAGVFVDFGLDHLPELSSNDFAGLGGVETGVCANYLPRVTLQHHRYHQ----------------QRTASRGPYDLAGAAVAAGVFSSCEGVRLGSDSSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEEAWWEVLEGEEFVAMPEPTWGGAGGLDTQSMMEEPFRTNPRGCGWRSDGGGRGGVET----------NRGMAESGR-----------------GPHGDGGRTVASHAATARSLSLDSSSITAATAAAGLGGVVVMPGDEGFSGDMSGRDSCGRNG---------------GVHGISGGGGSGG-------RLCPSSKKFAGSV------EDARVAFSTSPSM--PGAPPAASRAMRPSSRELGSASTTSTSPSGSVFSPAASSSPNGVYP-------------IGFGLAV------HSQDPLPHGGAGLRSAGQGSAHENGGLSKAWVPGDMWATTATATTSGDA--MSPSKCLSLSPAKAVTAMAASPSSSSPALSMLAQSTPPWGTGPLCSPQQTRAASRA 979 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1515.3685.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1515.3685.1 >prot_L-elsbetiae_contig1515.3685.1 ID=prot_L-elsbetiae_contig1515.3685.1|Name=mRNA_L-elsbetiae_contig1515.3685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1015bp MVKASGGRSKGKGSGGSGGGGLAPASPTRRLKKGGKRGRRLCHMDGCSLCback to top mRNA from alignment at L-elsbetiae_contig1515:10657..16985- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1515.3685.1 ID=mRNA_L-elsbetiae_contig1515.3685.1|Name=mRNA_L-elsbetiae_contig1515.3685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6329bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:10657..16985- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1515:10657..16985- >mRNA_L-elsbetiae_contig1515.3685.1 ID=mRNA_L-elsbetiae_contig1515.3685.1|Name=mRNA_L-elsbetiae_contig1515.3685.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=6090bp|location=Sequence derived from alignment at L-elsbetiae_contig1515:10657..16985- (Laminarionema elsbetiae ELsaHSoW15)back to top |