mRNA_L-elsbetiae_contig1513.3670.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1513.3670.1
Unique NamemRNA_L-elsbetiae_contig1513.3670.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1513.3670.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1513contigL-elsbetiae_contig1513:3363..3824 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size462
Cds size444
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.5034754-UTR-L-elsbetiae_contig1513:3362..33801622815615.5034754-UTR-L-elsbetiae_contig1513:3362..3380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1513 3363..3380 +
1691682992.839144-UTR-L-elsbetiae_contig1513:3362..33801691682992.839144-UTR-L-elsbetiae_contig1513:3362..3380Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1513 3363..3380 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.5144742-CDS-L-elsbetiae_contig1513:3380..38241622815615.5144742-CDS-L-elsbetiae_contig1513:3380..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1513 3381..3824 +
1691682992.851509-CDS-L-elsbetiae_contig1513:3380..38241691682992.851509-CDS-L-elsbetiae_contig1513:3380..3824Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1513 3381..3824 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1513.3670.1prot_L-elsbetiae_contig1513.3670.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1513 3381..3824 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1513.3670.1

>prot_L-elsbetiae_contig1513.3670.1 ID=prot_L-elsbetiae_contig1513.3670.1|Name=mRNA_L-elsbetiae_contig1513.3670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MRCWCRGRLNTKGESIVLYLIGKTSIIKYEFFCRCVACSGARQRKGTHVY
TIFTNFATLQKKIAVRKKSPAQNFFRLTVEWGSYTHTISVTREKFGDALY
MWAPAGGHTAGLLLKLDISELIFEISEYADNQKKCPEPKKPSCRFCL*
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mRNA from alignment at L-elsbetiae_contig1513:3363..3824+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1513.3670.1 ID=mRNA_L-elsbetiae_contig1513.3670.1|Name=mRNA_L-elsbetiae_contig1513.3670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig1513:3363..3824+ (Laminarionema elsbetiae ELsaHSoW15)
CGGGTTACTGTGAAAGGGATGAGGTGTTGGTGCCGTGGTAGGCTGAATAC
CAAGGGCGAGAGTATTGTATTGTATTTGATCGGAAAGACATCGATCATAA
AATATGAGTTTTTTTGTAGGTGTGTCGCATGTTCTGGCGCGAGGCAAAGA
AAGGGCACACATGTGTACACAATATTTACAAACTTCGCCACGCTGCAAAA
AAAAATTGCCGTGCGAAAAAAGTCCCCGGCGCAAAACTTTTTCCGGCTCA
CTGTGGAGTGGGGTAGTTACACGCACACAATTTCTGTGACACGTGAGAAA
TTCGGGGATGCGCTGTACATGTGGGCACCAGCCGGTGGGCACACAGCAGG
CCTTTTGCTGAAACTTGATATTTCAGAATTGATATTTGAAATTTCAGAAT
ATGCGGACAACCAAAAAAAATGCCCCGAGCCGAAGAAACCTTCTTGCAGG
TTTTGTTTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1513:3363..3824+

>mRNA_L-elsbetiae_contig1513.3670.1 ID=mRNA_L-elsbetiae_contig1513.3670.1|Name=mRNA_L-elsbetiae_contig1513.3670.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig1513:3363..3824+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGGTGTTGGTGCCGTGGTAGGCTGAATACCAAGGGCGAGAGTATTGT
ATTGTATTTGATCGGAAAGACATCGATCATAAAATATGAGTTTTTTTGTA
GGTGTGTCGCATGTTCTGGCGCGAGGCAAAGAAAGGGCACACATGTGTAC
ACAATATTTACAAACTTCGCCACGCTGCAAAAAAAAATTGCCGTGCGAAA
AAAGTCCCCGGCGCAAAACTTTTTCCGGCTCACTGTGGAGTGGGGTAGTT
ACACGCACACAATTTCTGTGACACGTGAGAAATTCGGGGATGCGCTGTAC
ATGTGGGCACCAGCCGGTGGGCACACAGCAGGCCTTTTGCTGAAACTTGA
TATTTCAGAATTGATATTTGAAATTTCAGAATATGCGGACAACCAAAAAA
AATGCCCCGAGCCGAAGAAACCTTCTTGCAGGTTTTGTTTGTAGATGAGG
TGTTGGTGCCGTGGTAGGCTGAATACCAAGGGCGAGAGTATTGTATTGTA
TTTGATCGGAAAGACATCGATCATAAAATATGAGTTTTTTTGTAGGTGTG
TCGCATGTTCTGGCGCGAGGCAAAGAAAGGGCACACATGTGTACACAATA
TTTACAAACTTCGCCACGCTGCAAAAAAAAATTGCCGTGCGAAAAAAGTC
CCCGGCGCAAAACTTTTTCCGGCTCACTGTGGAGTGGGGTAGTTACACGC
ACACAATTTCTGTGACACGTGAGAAATTCGGGGATGCGCTGTACATGTGG
GCACCAGCCGGTGGGCACACAGCAGGCCTTTTGCTGAAACTTGATATTTC
AGAATTGATATTTGAAATTTCAGAATATGCGGACAACCAAAAAAAATGCC
CCGAGCCGAAGAAACCTTCTTGCAGGTTTTGTTTGTAG
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