mRNA_L-elsbetiae_contig1512.3666.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1512.3666.1
Unique NamemRNA_L-elsbetiae_contig1512.3666.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1512.3666.1 vs. uniprot
Match: A0A6H5JEX0_9PHAE (PDZ domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEX0_9PHAE)

HSP 1 Score: 159 bits (403), Expect = 6.350e-42
Identity = 82/105 (78.10%), Postives = 87/105 (82.86%), Query Frame = 2 
Query:    2 RAERDEKRKRLETRRRPTWWQPQVKGSHRTVLALRPADALPGATPGGPVPAGAYLLEDAVLGDKLTIPAGSKLLSVDGKPTGELDFTAARDVALSACPNSVLVFE 316
            R ERDEKRKRL  RRRP WWQPQ +GSHR VL LRPADALPGATPG PVP GA+LLED VLGDKLTIPAG+KLLSVDG PTG LDF  AR+VAL+A   SVL FE
Sbjct: 1068 RLERDEKRKRLAIRRRPAWWQPQQRGSHRAVLVLRPADALPGATPGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGTPTGHLDFKTAREVALTAGAKSVLAFE 1172
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BLAST of mRNA_L-elsbetiae_contig1512.3666.1 vs. uniprot
Match: D7G0M9_ECTSI (PDZ domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0M9_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 1.830e-20
Identity = 53/82 (64.63%), Postives = 57/82 (69.51%), Query Frame = 2 
Query:   71 VKGSHRTVLALRPADALPGATPGGPVPAGAYLLEDAVLGDKLTIPAGSKLLSVDGKPTGELDFTAARDVALSACPNSVLVFE 316
             +G+ R VL        PG   G PVP GA+LLED VLGDKLTIPAG+KLLSVDG PTG LDF  ARDVALSA   SVL FE
Sbjct:  867 AEGAARHVLTPTSPSLPPGTRTGAPVPTGAFLLEDTVLGDKLTIPAGAKLLSVDGIPTGHLDFNTARDVALSAGAKSVLAFE 948
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1512.3666.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JEX0_9PHAE6.350e-4278.10PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
D7G0M9_ECTSI1.830e-2064.63PDZ domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1512contigL-elsbetiae_contig1512:16557..18352 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size555
Cds size555
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1512.3666.1prot_L-elsbetiae_contig1512.3666.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1512 16557..18352 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.0237763-CDS-L-elsbetiae_contig1512:16556..167371622815615.0237763-CDS-L-elsbetiae_contig1512:16556..16737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 16557..16737 -
1691682992.5528948-CDS-L-elsbetiae_contig1512:16556..167371691682992.5528948-CDS-L-elsbetiae_contig1512:16556..16737Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 16557..16737 -
1622815615.0372684-CDS-L-elsbetiae_contig1512:16801..170381622815615.0372684-CDS-L-elsbetiae_contig1512:16801..17038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 16802..17038 -
1691682992.5622587-CDS-L-elsbetiae_contig1512:16801..170381691682992.5622587-CDS-L-elsbetiae_contig1512:16801..17038Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 16802..17038 -
1622815615.0518782-CDS-L-elsbetiae_contig1512:18215..183521622815615.0518782-CDS-L-elsbetiae_contig1512:18215..18352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 18216..18352 -
1691682992.5700889-CDS-L-elsbetiae_contig1512:18215..183521691682992.5700889-CDS-L-elsbetiae_contig1512:18215..18352Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 18216..18352 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1512.3666.1

>prot_L-elsbetiae_contig1512.3666.1 ID=prot_L-elsbetiae_contig1512.3666.1|Name=mRNA_L-elsbetiae_contig1512.3666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=185bp
AGRAGREAEAARDAPEADVVAATGQGLSQDGTRPPARGCATRSHARRSRP
SGRLFAGGRGAGGQADNSGRVKAAIGRREADGGVGLHGGERRGSLRVPEL
GVGLRRLGTTVDWVVSFFFLSIFGHFFCVLSCCGGVLTLDLVSCFCALSY
VVRSCRRSRAGFFFSCLSCVWCVCSCPRFWCALLL
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mRNA from alignment at L-elsbetiae_contig1512:16557..18352-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1512.3666.1 ID=mRNA_L-elsbetiae_contig1512.3666.1|Name=mRNA_L-elsbetiae_contig1512.3666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1796bp|location=Sequence derived from alignment at L-elsbetiae_contig1512:16557..18352- (Laminarionema elsbetiae ELsaHSoW15)
GCGGGCCGAGCGGGACGAGAAGCGGAAGCGGCTCGAGACGCGCCGGAGGC
CGACGTGGTGGCAGCCACAGGTCAAGGGCTCTCACAGGACGGTACTCGCC
CTCCGGCCCGCGGATGCGCTACCCGGAGCCACGCCAGGTGTGCTTTTTTA
ACTTAGATATGTAGTGCGCTTTTGTATTTGCGTGTGTGTGTTTTTCCTTG
AGCACCGGCATATCGACGGGGGCGGAAAAGGCTGACCGGCGAAAGTACCA
TCGGTCTAACCTAGATAGATGATGCGCCAAGCAAGGCACGAGGACGCGCT
TGGCTCGTTTGCGATGGCCGTGTTCGTTTTCGTGTTCATGTTTTCGTGTT
TTGTTTGTTATTGCGTGTGTGTTTAGTGTTCTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTTTTGTCATTGAAGTGGCAGTCGCCGTCGTGGCAACCGGGT
GACCAAAACGAAAGTTCACGCCGGTGTCAGCCGCCGTGCCAACCGGCAGG
CGAACCGCAACAACGCCGGTCTGAAGTTGAATACAGTATGTAGGTACGTT
TTAAGGAACAATCAAGGCAGAAGTGCGTTCTGCGTGTGCTGCTGGCGACT
TCACAAAACGCAACGCGGCCGGCGGTGTTGAACGGATCTGTGACGGGGTC
TAAGCACTGCTGTATAATCTATCTGTATATGTTGTACCACCGTGTGTGCA
GTTTTTCTATTCGTTGGCCCACTCTTTTCATTCCGTGTTTCTTCTCCTCG
TTACCTGCCTTCTGAACACAGACAGTTGTGGATTTTTGGGGTTGCATGCC
TCTCGCGGAGGGCCTGTTGTCTGAAGGACCGCCTACTTAAGCGCAGAAAA
TCGTCAAATTCAGGTTCATATGTCAAATAGAGTGAGGGGGTTCCGTAACC
GTAACCCTAAATCGTCAAATTCAGGTTCAATGTCAAATAGAGTGAGGGGG
GTCCGTAACCCTAAACCTAACCCTAACCACGACCCCCCCCCCCATTCCTC
CGATTCCATACTTTACCCCATATGTTTTGCTGACTGAAAACCTGCGTAGA
CTACCGTGTCTGAAGTACTACGGACGACCCCGTGGTTCGCGAGCATTGTA
CAACTATTTAATGAGTATGTATACATGTAGACACCGCAAGAGCCCCGACA
TGTCGGCGGCGGCCCCCTAGCAGCAGCAGGGATCGGTGCTCCGCCTCGGA
AGGGGTAAAGAGTGATGCGTAACGTCACGGGTACATACCAACGACTGGGT
TAACCAACCATCGAAGAACCCCCCCCCCCCCGCGCCATCCCATGCCTGCT
GGGGACCCCAACAGGCGGTCCCGTCCCAGCGGGCGCTTATTTGCTGGAGG
ACGCGGTGCTGGGGGACAAGCTGACAATTCCGGCAGGGTCAAAGCTGCTA
TCGGTCGACGGGAAGCCGACGGGGGAGTTGGACTTCACGGCGGCGAGAGA
CGTGGCTCTCTCCGCGTGCCCGAACTCGGTGTTGGTCTTCGAAGACTAGG
GACTACAGTAGACTGGGTGGTCAGTTTTTTTTTTTTGTCCATCTTCGGTC
AGTTTTTTTTTTTTCCGTTTTTGCGTGGTGCGTTTTTTGCTTATTGCCCC
CAGATTTTGGGTCAGTTTCTTTTGTGTCTTATCTTGCTGCGGTGGCGTTC
TTACCCTAGATTTAGTCAGTTGTTTTTGTGCCTTATCTTACGTGGTGCGT
TCTTGCCGCAGATCGCGAGCCGGTTTTTTTTTTTCTTGTCTATCTTGCGT
GTGGTGCGTGTGTTCTTGCCCCCGTTTTTGGTGTGCGCTTTTATTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1512:16557..18352-

>mRNA_L-elsbetiae_contig1512.3666.1 ID=mRNA_L-elsbetiae_contig1512.3666.1|Name=mRNA_L-elsbetiae_contig1512.3666.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1110bp|location=Sequence derived from alignment at L-elsbetiae_contig1512:16557..18352- (Laminarionema elsbetiae ELsaHSoW15)
GCGGGCCGAGCGGGACGAGAAGCGGAAGCGGCTCGAGACGCGCCGGAGGC
CGACGTGGTGGCAGCCACAGGTCAAGGGCTCTCACAGGACGGTACTCGCC
CTCCGGCCCGCGGATGCGCTACCCGGAGCCACGCCAGGCGGGCCGAGCGG
GACGAGAAGCGGAAGCGGCTCGAGACGCGCCGGAGGCCGACGTGGTGGCA
GCCACAGGTCAAGGGCTCTCACAGGACGGTACTCGCCCTCCGGCCCGCGG
ATGCGCTACCCGGAGCCACGCCAGGCGGTCCCGTCCCAGCGGGCGCTTAT
TTGCTGGAGGACGCGGTGCTGGGGGACAAGCTGACAATTCCGGCAGGGTC
AAAGCTGCTATCGGTCGACGGGAAGCCGACGGGGGAGTTGGACTTCACGG
CGGCGAGAGACGTGGCTCTCTCCGCGTGCCCGAACTCGGTGTTGGTCTTC
GAAGACTAGGGACTACAGTAGACTGGGTGGTCAGTTTTTTTTTTTTGTCC
ATCTTCGGTCAGCGGTCCCGTCCCAGCGGGCGCTTATTTGCTGGAGGACG
CGGTGCTGGGGGACAAGCTGACAATTCCGGCAGGGTCAAAGCTGCTATCG
GTCGACGGGAAGCCGACGGGGGAGTTGGACTTCACGGCGGCGAGAGACGT
GGCTCTCTCCGCGTGCCCGAACTCGGTGTTGGTCTTCGAAGACTAGGGAC
TACAGTAGACTGGGTGGTCAGTTTTTTTTTTTTGTCCATCTTCGGTCATT
TCTTTTGTGTCTTATCTTGCTGCGGTGGCGTTCTTACCCTAGATTTAGTC
AGTTGTTTTTGTGCCTTATCTTACGTGGTGCGTTCTTGCCGCAGATCGCG
AGCCGGTTTTTTTTTTTCTTGTCTATCTTGCGTGTGGTGCGTGTGTTCTT
GCCCCCGTTTTTGGTGTGCGCTTTTATTGTTTCTTTTGTGTCTTATCTTG
CTGCGGTGGCGTTCTTACCCTAGATTTAGTCAGTTGTTTTTGTGCCTTAT
CTTACGTGGTGCGTTCTTGCCGCAGATCGCGAGCCGGTTTTTTTTTTTCT
TGTCTATCTTGCGTGTGGTGCGTGTGTTCTTGCCCCCGTTTTTGGTGTGC
GCTTTTATTG
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