mRNA_L-elsbetiae_contig1512.3664.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1512.3664.1
Unique NamemRNA_L-elsbetiae_contig1512.3664.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Match: D7G0M7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0M7_ECTSI)

HSP 1 Score: 357 bits (916), Expect = 6.660e-123
Identity = 171/209 (81.82%), Postives = 186/209 (89.00%), Query Frame = 2 
Query:   62 VNKNASDKVFDGGYSPPPSDPRFSTVTRMELTKTVHTPGYAIRRPKEGFDRLTANRTNYSLGDH-SAELTTATAELQMKHPRDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDIINGRGDQGARDKVGMRAGPRKTLNNAEKRDLHPTDAWGDMPGGMCIDLLTGKERKRFEPPKRGAGAPVRSDTVSGRTRPW 685
            VNKNASD+VFDG YSPPPSDPRFSTVTRMELTK+VHTPGYAIRRPKEGFDRL ANRTNYSLG H + EL TATAELQMKHPRD P VDQPA+GG T  DGSYRLD  ARDSVRRGGGGGEGV GVRFD+INGR D+GAR KV MR GPR+TLNNAEK  LHPTD WGD+PGGM +D+LTGK+R++F+ P+RGAGAPVRSDTVSGRTRPW
Sbjct:    2 VNKNASDEVFDGSYSPPPSDPRFSTVTRMELTKSVHTPGYAIRRPKEGFDRLNANRTNYSLGQHPTTELKTATAELQMKHPRDQPRVDQPAVGGSTLRDGSYRLDTSARDSVRRGGGGGEGVLGVRFDVINGREDEGARGKVAMRTGPRRTLNNAEKEVLHPTDGWGDVPGGMYVDILTGKDRRKFDVPERGAGAPVRSDTVSGRTRPW 210
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BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Match: A0A7S4DHZ4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DHZ4_HETAK)

HSP 1 Score: 118 bits (295), Expect = 2.040e-29
Identity = 71/158 (44.94%), Postives = 92/158 (58.23%), Query Frame = 2 
Query:   68 KNASDKV-FDGGYSPPPSDPRFSTVTRMELTKTVHTPGYAIRRPKEGFDRLTANRTNYSLGDHSAELTTATAELQMKHP--RDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDIINGRGDQGARDKVGMRAGPRKTLNNAEKR 532
            KN SDK    GGYS  P D  + TV + ELTK+ HT GY+  +P +GFDR TANRTNYSLG HS E  +A   LQ+ HP  R   P +QP +GG  R +G Y  D+ +  +++RGG G  GV  + FDI+ G      R     R GPR + N  +K+
Sbjct:    6 KNKSDKESIQGGYSYIP-DQHYKTVAQAELTKSTHTHGYSKAKPGDGFDRQTANRTNYSLGSHSIEYKSANHALQLSHPEERSHRP-EQPQLGGWNRGNGHYHQDIESMRTIQRGGAGAGGVLQLNFDIVTGADKPHVRADNLRRFGPRVSENVRQKQ 161
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BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Match: A0A7S2S3K8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S3K8_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.620e-24
Identity = 74/217 (34.10%), Postives = 112/217 (51.61%), Query Frame = 2 
Query:   59 RVNKNASDK-VFDGGYSPPPSDPRFSTVTRMELTKTVHTPGYAIR----RPKEGFDRLTANRTNYSLGDHSAELTT--ATAELQMKHPRDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDIINGRGDQGARDKVGMRAGPRKTLNNAEKRDLHPTDAWGDMPGGMCIDLLTGKERKRFEPPKR-GAGAPVRSDTVSGRTRPW 685
            R++KNASDK    G    P  DPR   V +       H+   A+     R +  FDRL+A++TNY +      +     T+ +   HP+  P  +Q A+GG   S G Y  +  A+++V+RGGGGGEG  GVRF+I+   G   AR+   ++ GPR ++N  E      ++ +GD    M  +++TGK+   F+ PK  G    +R +    RTRPW
Sbjct:   64 RIHKNASDKDSIQGAEGGPYHDPR--KVFKTTFASDYHSGASALSEKYVRERPAFDRLSASKTNYEITSPLETIPPFKTTSHVLHAHPKTRPQPEQAAIGGWRTSTGEYCTNELAKETVKRGGGGGEGSLGVRFNIVTNEGAPRARETALLQTGPRVSMNKKEPW-RQGSNRFGDSD--MQTNIITGKQHAHFQAPKPLGPADLLRPNEAIARTRPW 275
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BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Match: A0A835YXM3_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXM3_9STRA)

HSP 1 Score: 106 bits (264), Expect = 4.420e-24
Identity = 77/230 (33.48%), Postives = 106/230 (46.09%), Query Frame = 2 
Query:    2 TTYAESCSRVREGVHEPRARVNKNASDKVFDGGYSPPPSDPRFSTVTRMELTKT-VHTPGYAIRRPKEGFDRLTANRTNYSLGDHSAELTTATAELQMKHPRDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDIINGRGDQGARDKVGMRAGPRKTLNNAEKRDLHPTDAWGDMPGGMCIDLLTGKE-RKRFEPPKRGAGAPVRSDTVSGRTRPW 685
            TTY+ S + +    + P  R++KN S K    G    P++  ++T  +       V + G+  +RP  G+DRLTA+RTNYSLG   A  +TA AE Q   PR   PV QP +G                          +   G  + II G     AR++     GPR TLN  E+  LHPTD+WG    G  +D++TGK       PP       +R D +  RTRPW
Sbjct:   40 TTYSLSVAVLSPADYRPMPRLDKNRSHKEAIQGEYQVPAEEFYTTDYKAGYAGGGVPSTGFKRQRPLPGYDRLTASRTNYSLGTQPATSSTAAAE-QFADPRTRTPVQQPCIGPA------------------------DACLGSSYHIITGE-SWDAREQRLRCMGPRHTLNQEERCKLHPTDSWGGDLYGTHVDIVTGKRVANPIRPPAPTVETLLRPDALGLRTRPW 243
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BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Match: A0A7S2D1K6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D1K6_9STRA)

HSP 1 Score: 102 bits (255), Expect = 1.830e-22
Identity = 76/211 (36.02%), Postives = 105/211 (49.76%), Query Frame = 2 
Query:   68 KNASD-KVFDGG---YSPPPSDPRFSTVTRMELTKTVHTPGYAIRRPKEGFDRLTANRTNYSLGDHSAELTTATAELQMKHPRDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDIINGRGDQGARDKVGMRAGPRKTLNNAEKRDLHPTDAWGDMPGGMCIDLLTGKERKRFEPPKRGAGAPVRS-DTVSGRTRPW 685
            KN SD + F GG   Y  P    R +  +      T+H+  Y    PK  + RLTA RTNY+LG +  +L + T+      P     V   A  G  ++   Y  D+ AR+S+ RGGGGGEG  G RFDIING+ D   R++V MR G R ++N  E       D +GD      +++L+G+ R R  PP +     +R  D     TRPW
Sbjct:   74 KNHSDLESFQGGPPKYKDPNVVYRTTKASDFNHESTLHSNEYMKSEPK--YTRLTAGRTNYTLGAYEGKLAS-TSHTHHAPPCPIERVKGQATIGGWQTGNKYHTDIHARESIMRGGGGGEGSLGTRFDIINGKDDPSFRNRVSMRTGARVSVNKREPWS-QGADRYGDHH--EPVNILSGQPRTRHNPPPQQNALQLRRPDQPLLATRPW 278
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1512.3664.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7G0M7_ECTSI6.660e-12381.82Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DHZ4_HETAK2.040e-2944.94Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A7S2S3K8_9STRA1.620e-2434.10Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A835YXM3_9STRA4.420e-2433.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2D1K6_9STRA1.830e-2236.02Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1512contigL-elsbetiae_contig1512:399..2311 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001520.1
Exons2
Model size770
Cds size543
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1512.3664.1prot_L-elsbetiae_contig1512.3664.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1512 1687..2229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.0911157-UTR-L-elsbetiae_contig1512:398..5031622815615.0911157-UTR-L-elsbetiae_contig1512:398..503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 399..503 +
1691682992.5786316-UTR-L-elsbetiae_contig1512:398..5031691682992.5786316-UTR-L-elsbetiae_contig1512:398..503Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 399..503 +
1622815615.1068647-UTR-L-elsbetiae_contig1512:1646..16861622815615.1068647-UTR-L-elsbetiae_contig1512:1646..1686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 1647..1686 +
1691682992.5886126-UTR-L-elsbetiae_contig1512:1646..16861691682992.5886126-UTR-L-elsbetiae_contig1512:1646..1686Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 1647..1686 +
1622815615.1312044-UTR-L-elsbetiae_contig1512:2229..23111622815615.1312044-UTR-L-elsbetiae_contig1512:2229..2311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 2230..2311 +
1691682992.6096733-UTR-L-elsbetiae_contig1512:2229..23111691682992.6096733-UTR-L-elsbetiae_contig1512:2229..2311Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1512 2230..2311 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815615.1181018-CDS-L-elsbetiae_contig1512:1686..22291622815615.1181018-CDS-L-elsbetiae_contig1512:1686..2229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 1687..2229 +
1691682992.6006408-CDS-L-elsbetiae_contig1512:1686..22291691682992.6006408-CDS-L-elsbetiae_contig1512:1686..2229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1512 1687..2229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1512.3664.1

>prot_L-elsbetiae_contig1512.3664.1 ID=prot_L-elsbetiae_contig1512.3664.1|Name=mRNA_L-elsbetiae_contig1512.3664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=181bp
MELTKTVHTPGYAIRRPKEGFDRLTANRTNYSLGDHSAELTTATAELQMK
HPRDWPPVDQPAMGGPTRSDGSYRLDVGARDSVRRGGGGGEGVFGVRFDI
INGRGDQGARDKVGMRAGPRKTLNNAEKRDLHPTDAWGDMPGGMCIDLLT
GKERKRFEPPKRGAGAPVRSDTVSGRTRPW*
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mRNA from alignment at L-elsbetiae_contig1512:399..2311+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1512.3664.1 ID=mRNA_L-elsbetiae_contig1512.3664.1|Name=mRNA_L-elsbetiae_contig1512.3664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1913bp|location=Sequence derived from alignment at L-elsbetiae_contig1512:399..2311+ (Laminarionema elsbetiae ELsaHSoW15)
GACCACCTACGCCGAGTCTTGCAGCAGGGTGAGGGAAGGGGTCCACGAGC
CAAGGGCAAGAGTCAACAAGAATGCCTCGGACAAGGTCTTCGACGGAGGC
TACAGGTAACCGGGAGGAGCTACGTGTAGACAAGGCCACAAAGGTTGTCG
ATTGATAGCAAATACTCCGACAGCAGTGGCTTCTCGGCATTTCGACAGAT
CTCCGTTATCGTACCTTTGTGAGTGCTTTTTTTATTTTACGGAACCCACA
CGTACATTATTCTACCCACATTATTGTACCAATGCTCGGACGAGCATCAT
CTGAGCAAATTTAGAAGCAGCGCACCGTCTTCAGTCGCCCACGTAGTAAA
CGCGCAGTGATATGTTTTTTACCAGTGTTGTTTGTCTAGACTATCCTGGG
CACAAGCTCCCCTGCTAGTGTTTGCAGGCTCAACAAGACAATTTCGTGGT
CATCTTGTGTTTTTGAAATGTGCAACAATGTTTGGCCGCAGCCTGCACGT
CCAACTACAAGCAACCTGTTTCAGATTCCGGGTGTGCTCAATTTCCCGAG
TGCAAGAGGTACTGTATCCCCCCCCCCCCCATCCTGCCGCCGCTCTGTGT
AAAGCCGGAGGAACTTCTGCTGTCACTTGGTTGGATCCATTGGCTATCGT
GGTATATCGTGGTATGTAGGACTATCTACTCAATGTACTTGGTCAGGGCG
TTTTCATTTGTTTCGCACATTGCCAAGGGTGACAAGACGGCGGGGAAGAA
AACACTCCCGACAACAGCACGAATTGAAAGGATGAGTAGATGAACCACTT
CGAGTGGACAACACTTGAAGATAAACGGGAAAGGGAGAAGCAGCTATCAA
ACGTCACGAGCGCATAAAATAAACTACACCGCCGGCGGCTGTAAAACGTT
AATTCACACAAAAGGTCCGCCAGGCAACGAGGGTCATGCACATGAATGCG
TGTGTTTCGTTCTGAAATGAGGGCGTCCATTTTTAAAAGTTACCATTCAC
TATTTCTAACAACTCGAGGCGTTGGAGGCTGCCAAAATCTGAATTGTGGG
TGTGGTTACGTGACTGACGGGCTAATGATGCCTTCCCCCCGAAAAAATAC
TCCAAAGTGTGTTCATGTGTTGTTTCCTTCCCCCCAGGTCCCTCCAAAAA
CCTTTCGTTCCGTAAAACATCTGTCCAAACCACCTGCTACGAACACAAGC
CCAGCAATCCACCTCCTTTTAAATCCTGCGTCCCGTCGCCGTACACAGCC
CGCCGCCGTCGGACCCGCGATTTTCAACGGTGACAAGGATGGAACTGACC
AAAACCGTGCACACCCCGGGCTACGCCATCCGACGCCCGAAGGAGGGCTT
CGACCGTCTCACGGCGAACCGCACGAACTACTCCCTCGGCGACCACAGCG
CGGAGCTCACGACCGCGACGGCCGAGCTCCAGATGAAGCACCCGCGCGAC
TGGCCGCCAGTGGATCAGCCGGCGATGGGGGGGCCGACGCGCAGCGACGG
GTCTTACCGCCTCGACGTGGGGGCGAGAGACAGCGTCCGCCGGGGGGGCG
GAGGCGGGGAGGGAGTCTTCGGGGTCAGGTTTGACATCATCAACGGGAGG
GGGGATCAGGGGGCGAGGGACAAGGTCGGCATGCGCGCGGGGCCGCGGAA
GACGCTGAACAACGCGGAGAAGAGGGATCTGCATCCGACCGACGCGTGGG
GGGACATGCCGGGGGGGATGTGCATTGACCTCTTGACCGGAAAGGAGCGG
AAGAGGTTCGAGCCGCCCAAGCGAGGGGCCGGGGCCCCCGTCAGGAGTGA
TACCGTTTCGGGCAGAACTCGACCCTGGTAACAATGGAAGGGAGGCAACT
CTTGATTCAGCAGGGTTGCCGCCAACGTGTGGATTGAAAGGCGTGATAAA
AAATATGTTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1512:399..2311+

>mRNA_L-elsbetiae_contig1512.3664.1 ID=mRNA_L-elsbetiae_contig1512.3664.1|Name=mRNA_L-elsbetiae_contig1512.3664.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1086bp|location=Sequence derived from alignment at L-elsbetiae_contig1512:399..2311+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAACTGACCAAAACCGTGCACACCCCGGGCTACGCCATCCGACGCCC
GAAGGAGGGCTTCGACCGTCTCACGGCGAACCGCACGAACTACTCCCTCG
GCGACCACAGCGCGGAGCTCACGACCGCGACGGCCGAGCTCCAGATGAAG
CACCCGCGCGACTGGCCGCCAGTGGATCAGCCGGCGATGGGGGGGCCGAC
GCGCAGCGACGGGTCTTACCGCCTCGACGTGGGGGCGAGAGACAGCGTCC
GCCGGGGGGGCGGAGGCGGGGAGGGAGTCTTCGGGGTCAGGTTTGACATC
ATCAACGGGAGGGGGGATCAGGGGGCGAGGGACAAGGTCGGCATGCGCGC
GGGGCCGCGGAAGACGCTGAACAACGCGGAGAAGAGGGATCTGCATCCGA
CCGACGCGTGGGGGGACATGCCGGGGGGGATGTGCATTGACCTCTTGACC
GGAAAGGAGCGGAAGAGGTTCGAGCCGCCCAAGCGAGGGGCCGGGGCCCC
CGTCAGGAGTGATACCGTTTCGGGCAGAACTCGACCCTGGTAAATGGAAC
TGACCAAAACCGTGCACACCCCGGGCTACGCCATCCGACGCCCGAAGGAG
GGCTTCGACCGTCTCACGGCGAACCGCACGAACTACTCCCTCGGCGACCA
CAGCGCGGAGCTCACGACCGCGACGGCCGAGCTCCAGATGAAGCACCCGC
GCGACTGGCCGCCAGTGGATCAGCCGGCGATGGGGGGGCCGACGCGCAGC
GACGGGTCTTACCGCCTCGACGTGGGGGCGAGAGACAGCGTCCGCCGGGG
GGGCGGAGGCGGGGAGGGAGTCTTCGGGGTCAGGTTTGACATCATCAACG
GGAGGGGGGATCAGGGGGCGAGGGACAAGGTCGGCATGCGCGCGGGGCCG
CGGAAGACGCTGAACAACGCGGAGAAGAGGGATCTGCATCCGACCGACGC
GTGGGGGGACATGCCGGGGGGGATGTGCATTGACCTCTTGACCGGAAAGG
AGCGGAAGAGGTTCGAGCCGCCCAAGCGAGGGGCCGGGGCCCCCGTCAGG
AGTGATACCGTTTCGGGCAGAACTCGACCCTGGTAA
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