mRNA_L-elsbetiae_contig15069.3635.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15069.3635.1
Unique NamemRNA_L-elsbetiae_contig15069.3635.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15069.3635.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15069contigL-elsbetiae_contig15069:2392..3208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons3
Model size333
Cds size177
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15069.3635.1prot_L-elsbetiae_contig15069.3635.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15069 2734..3208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.5454018-UTR-L-elsbetiae_contig15069:2391..25461622815611.5454018-UTR-L-elsbetiae_contig15069:2391..2546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15069 2392..2546 +
1691682990.393776-UTR-L-elsbetiae_contig15069:2391..25461691682990.393776-UTR-L-elsbetiae_contig15069:2391..2546Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15069 2392..2546 +
1622815611.5555604-UTR-L-elsbetiae_contig15069:2732..27331622815611.5555604-UTR-L-elsbetiae_contig15069:2732..2733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15069 2733..2733 +
1691682990.4089134-UTR-L-elsbetiae_contig15069:2732..27331691682990.4089134-UTR-L-elsbetiae_contig15069:2732..2733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15069 2733..2733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.567341-CDS-L-elsbetiae_contig15069:2733..28341622815611.567341-CDS-L-elsbetiae_contig15069:2733..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15069 2734..2834 +
1691682990.4183183-CDS-L-elsbetiae_contig15069:2733..28341691682990.4183183-CDS-L-elsbetiae_contig15069:2733..2834Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15069 2734..2834 +
1622815611.578751-CDS-L-elsbetiae_contig15069:3132..32081622815611.578751-CDS-L-elsbetiae_contig15069:3132..3208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15069 3133..3208 +
1691682990.42648-CDS-L-elsbetiae_contig15069:3132..32081691682990.42648-CDS-L-elsbetiae_contig15069:3132..3208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15069 3133..3208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15069.3635.1

>prot_L-elsbetiae_contig15069.3635.1 ID=prot_L-elsbetiae_contig15069.3635.1|Name=mRNA_L-elsbetiae_contig15069.3635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=59bp
MRVLQDRPNGYRLRQQAAGLDGQRRRAKGQNEDNGHEIMVARCALPSATL
GGFFRSGW*
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mRNA from alignment at L-elsbetiae_contig15069:2392..3208+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15069.3635.1 ID=mRNA_L-elsbetiae_contig15069.3635.1|Name=mRNA_L-elsbetiae_contig15069.3635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=817bp|location=Sequence derived from alignment at L-elsbetiae_contig15069:2392..3208+ (Laminarionema elsbetiae ELsaHSoW15)
CACTTTTGACCTGCTGGCCCGCAGCACGGCGTGCCAGCAGGTTGAAAGCG
CTGGGCCCCCGATCGATCAGGACGACATGCTGAAATTTTGGCTGCATGCC
CGGCGTGAGCGACATGTTTGGGCTTGTCTTCGAGGAGAGCCCCGACGGAT
CCAAGGTGCGTGATTATGTTATTTGGGTACGGGCTTGGGCTTGTGTTCGC
CGAAGTAGCGGCAACGACCGCTTTGGTGTTGGATGCGAATGAGATGGTTT
GCCGGCTGCTCTTTTTCTCTACCGCCGCCGCCGCCGCCACCGCCAACGCT
GCCGGTTCCGCTGCCTTTTTGTTTCTCCTTGATTCCCGCAGGATGAGAGT
CCTTCAAGACCGACCCAATGGCTACCGTCTCCGACAACAGGCCGCTGGTT
TGGATGGGCAGAGGCGGCGGGCGAAGGGTCAAAATGAGGACAAGTAGGTT
TCAGCTGGGTGCATGCACCACGTACAAAGGTTGCTTTTCCGGCTCGGCCA
ATACCAGAGCCGACCGAGGCTGTAGTCCGTCTGTCTGCACGGTGCTCTCT
TCGGGAACTATGTATCTTATCTTTATTTTCTCACAGATGCCATCGGTGTA
CTACACAACGTCGCCCTCTGCTTCCTTGCGGATAGCGGGGGTGCGGGCCT
GGGCCCGCTCTTGGCTTGCCGCACCCCGCATCTCAAGCTCTCACTCGCAC
TTATTCTCGATCACCTCCTTTCCCACATGAACATTGCGCAGTGGCCACGA
AATAATGGTCGCAAGGTGCGCTCTGCCTTCGGCCACTTTGGGGGGCTTTT
TTCGTTCGGGCTGGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15069:2392..3208+

>mRNA_L-elsbetiae_contig15069.3635.1 ID=mRNA_L-elsbetiae_contig15069.3635.1|Name=mRNA_L-elsbetiae_contig15069.3635.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=354bp|location=Sequence derived from alignment at L-elsbetiae_contig15069:2392..3208+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGTCCTTCAAGACCGACCCAATGGCTACCGTCTCCGACAACAGGC
CGCTGGTTTGGATGGGCAGAGGCGGCGGGCGAAGGGTCAAAATGAGGACA
AATGAGAGTCCTTCAAGACCGACCCAATGGCTACCGTCTCCGACAACAGG
CCGCTGGTTTGGATGGGCAGAGGCGGCGGGCGAAGGGTCAAAATGAGGAC
AATGGCCACGAAATAATGGTCGCAAGGTGCGCTCTGCCTTCGGCCACTTT
GGGGGGCTTTTTTCGTTCGGGCTGGTAGTGGCCACGAAATAATGGTCGCA
AGGTGCGCTCTGCCTTCGGCCACTTTGGGGGGCTTTTTTCGTTCGGGCTG
GTAG
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