mRNA_L-elsbetiae_contig15057.3629.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15057.3629.1
Unique NamemRNA_L-elsbetiae_contig15057.3629.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A6H5KWE3_9PHAE (GCFC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE3_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.590e-27
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    7 QAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLTDTSGA 198
            +AFRTLRE+FPEEYAVFGLAQLVPAMAAPV+KRSLAGWSPL AP +PA LLASWKDVLTDTSGA
Sbjct:  191 KAFRTLRERFPEEYAVFGLAQLVPAMAAPVLKRSLAGWSPLQAPTEPARLLASWKDVLTDTSGA 254
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.690e-27
Identity = 57/64 (89.06%), Postives = 61/64 (95.31%), Query Frame = 1 
Query:    7 QAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLTDTSGA 198
            +AFRTLRE+FPEEYAVFGLAQLVPAMAAPV+KRSLAGWSPL AP +PA LLASWKDVLTDTSGA
Sbjct:  621 KAFRTLRERFPEEYAVFGLAQLVPAMAAPVLKRSLAGWSPLQAPTEPARLLASWKDVLTDTSGA 684
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A7S2STN5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STN5_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 3.890e-8
Identity = 31/64 (48.44%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:    1 LSQAFRTLR-EKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLTDT 189
            L +A R LR ++  EE+A+FGLAQLVP + APVI+ +LA W PL  P + A++LA+W+ ++  T
Sbjct:  448 LLEALRDLRADERAEEFAMFGLAQLVPGLMAPVIEDALADWDPLSHPTRGAAVLAAWRPLVART 511
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A369RVN8_9METZ (Tuftelin-interacting protein 11 n=1 Tax=Trichoplax sp. H2 TaxID=287889 RepID=A0A369RVN8_9METZ)

HSP 1 Score: 52.4 bits (124), Expect = 3.070e-6
Identity = 26/63 (41.27%), Postives = 37/63 (58.73%), Query Frame = 1 
Query:    4 SQAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLTDTS 192
            S  F+ L++ FP+EY ++GLA L  A+  P+IK+ L GW PL  P         W  +LTD+S
Sbjct:  123 SSTFQKLQQNFPDEYKMYGLADLAVAIVYPLIKQYLRGWMPLQDPTFSLKTFIEWNALLTDSS 185
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A834KD79_VESVU (G-patch domain-containing protein n=11 Tax=Vespidae TaxID=7438 RepID=A0A834KD79_VESVU)

HSP 1 Score: 50.1 bits (118), Expect = 2.040e-5
Identity = 23/59 (38.98%), Postives = 35/59 (59.32%), Query Frame = 1 
Query:    4 SQAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVL 180
            +  F++L++K+ EEY ++ L  L  +   P IK SL  W+PL  P QP  L   WK++L
Sbjct:  380 ADVFKSLQDKYYEEYKMYELGDLATSFVGPKIKDSLLSWNPLMQPKQPIKLFEQWKEIL 438
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A150H3B5_GONPE (G-patch domain-containing protein n=1 Tax=Gonium pectorale TaxID=33097 RepID=A0A150H3B5_GONPE)

HSP 1 Score: 49.3 bits (116), Expect = 3.820e-5
Identity = 28/66 (42.42%), Postives = 40/66 (60.61%), Query Frame = 1 
Query:    1 LSQAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLT-DTSG 195
            L+  +  LRE++ EEY ++GLAQ   A A P ++  L GW PL  P++ A  L  W+ +LT D SG
Sbjct:  461 LAAQYGKLRERYREEYIMYGLAQAALAQALPRLQALLRGWQPLAEPSRGAEELRIWRQLLTQDGSG 526
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BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Match: A0A835XZY6_9CHLO (G-patch domain-containing protein n=1 Tax=Edaphochlamys debaryana TaxID=47281 RepID=A0A835XZY6_9CHLO)

HSP 1 Score: 48.1 bits (113), Expect = 9.800e-5
Identity = 24/65 (36.92%), Postives = 39/65 (60.00%), Query Frame = 1 
Query:    1 LSQAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPASLLASWKDVLTDTSG 195
            L+ A+  +R++F EEY ++G+AQ   A A P ++  L GW PL  P +  + + +WK +L   SG
Sbjct:  522 LAAAYGAIRDRFREEYIMYGIAQAALAQALPRMQALLRGWQPLQEPTRGTAEMRTWKALLQGESG 586
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15057.3629.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KWE3_9PHAE1.590e-2789.06GCFC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LQD4_ECTSI1.690e-2789.06G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S2STN5_9STRA3.890e-848.44Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A369RVN8_9METZ3.070e-641.27Tuftelin-interacting protein 11 n=1 Tax=Trichoplax... [more]
A0A834KD79_VESVU2.040e-538.98G-patch domain-containing protein n=11 Tax=Vespida... [more]
A0A150H3B5_GONPE3.820e-542.42G-patch domain-containing protein n=1 Tax=Gonium p... [more]
A0A835XZY6_9CHLO9.800e-536.92G-patch domain-containing protein n=1 Tax=Edaphoch... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15057contigL-elsbetiae_contig15057:3563..3760 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score115.9
Seed ortholog evalue7e-24
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
KEGG koko:K13103
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-10_005200.1
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Exons1
Model size198
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.0533566-CDS-L-elsbetiae_contig15057:3562..37601622815611.0533566-CDS-L-elsbetiae_contig15057:3562..3760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15057 3563..3760 +
1691682990.1301208-CDS-L-elsbetiae_contig15057:3562..37601691682990.1301208-CDS-L-elsbetiae_contig15057:3562..3760Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15057 3563..3760 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15057.3629.1prot_L-elsbetiae_contig15057.3629.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15057 3563..3760 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15057.3629.1

>prot_L-elsbetiae_contig15057.3629.1 ID=prot_L-elsbetiae_contig15057.3629.1|Name=mRNA_L-elsbetiae_contig15057.3629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
LSQAFRTLREKFPEEYAVFGLAQLVPAMAAPVIKRSLAGWSPLGAPAQPA
SLLASWKDVLTDTSGA
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mRNA from alignment at L-elsbetiae_contig15057:3563..3760+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15057.3629.1 ID=mRNA_L-elsbetiae_contig15057.3629.1|Name=mRNA_L-elsbetiae_contig15057.3629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=198bp|location=Sequence derived from alignment at L-elsbetiae_contig15057:3563..3760+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCCAGGCCTTCCGGACCTTGCGCGAGAAGTTCCCCGAGGAGTACGC
CGTCTTCGGCCTGGCGCAGCTAGTCCCCGCCATGGCCGCTCCCGTCATCA
AGAGGTCCCTCGCCGGCTGGAGCCCGCTGGGGGCGCCCGCCCAGCCCGCG
AGCCTCCTGGCCTCTTGGAAGGACGTCCTGACGGACACCTCCGGGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15057:3563..3760+

>mRNA_L-elsbetiae_contig15057.3629.1 ID=mRNA_L-elsbetiae_contig15057.3629.1|Name=mRNA_L-elsbetiae_contig15057.3629.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig15057:3563..3760+ (Laminarionema elsbetiae ELsaHSoW15)
CTCTCCCAGGCCTTCCGGACCTTGCGCGAGAAGTTCCCCGAGGAGTACGC
CGTCTTCGGCCTGGCGCAGCTAGTCCCCGCCATGGCCGCTCCCGTCATCA
AGAGGTCCCTCGCCGGCTGGAGCCCGCTGGGGGCGCCCGCCCAGCCCGCG
AGCCTCCTGGCCTCTTGGAAGGACGTCCTGACGGACACCTCCGGGGCCCT
CTCCCAGGCCTTCCGGACCTTGCGCGAGAAGTTCCCCGAGGAGTACGCCG
TCTTCGGCCTGGCGCAGCTAGTCCCCGCCATGGCCGCTCCCGTCATCAAG
AGGTCCCTCGCCGGCTGGAGCCCGCTGGGGGCGCCCGCCCAGCCCGCGAG
CCTCCTGGCCTCTTGGAAGGACGTCCTGACGGACACCTCCGGGGCC
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