mRNA_L-elsbetiae_contig15041.3623.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15041.3623.1
Unique NamemRNA_L-elsbetiae_contig15041.3623.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15041.3623.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15041contigL-elsbetiae_contig15041:386..754 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size369
Cds size369
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815610.52719-CDS-L-elsbetiae_contig15041:385..7541622815610.52719-CDS-L-elsbetiae_contig15041:385..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15041 386..754 +
1691682989.8834631-CDS-L-elsbetiae_contig15041:385..7541691682989.8834631-CDS-L-elsbetiae_contig15041:385..754Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15041 386..754 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15041.3623.1prot_L-elsbetiae_contig15041.3623.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15041 386..754 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15041.3623.1

>prot_L-elsbetiae_contig15041.3623.1 ID=prot_L-elsbetiae_contig15041.3623.1|Name=mRNA_L-elsbetiae_contig15041.3623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
AATSKGGRGGGRGDGDAAPAAVLRGTPGAVAALKALDEALKRGVKCEQRH
EAEMLGFIHGDPPGFPRAPVPAAAAADADADADAAAADAAAAGTAAPPLP
AVPATVAAAPSPLPSTMAPAAAT
back to top

mRNA from alignment at L-elsbetiae_contig15041:386..754+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15041.3623.1 ID=mRNA_L-elsbetiae_contig15041.3623.1|Name=mRNA_L-elsbetiae_contig15041.3623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=369bp|location=Sequence derived from alignment at L-elsbetiae_contig15041:386..754+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCACCTCGAAGGGCGGTCGCGGCGGCGGCAGGGGTGACGGCGACGC
GGCCCCCGCGGCCGTCCTGCGCGGCACTCCCGGCGCCGTCGCCGCCCTGA
AAGCGCTCGACGAGGCGCTCAAGCGCGGCGTGAAGTGCGAGCAGCGGCAC
GAGGCGGAGATGCTTGGATTCATTCACGGGGATCCCCCTGGTTTCCCACG
GGCTCCCGTACCTGCTGCTGCTGCTGCGGATGCGGATGCGGATGCGGATG
CCGCTGCTGCGGATGCCGCTGCTGCGGGCACCGCCGCTCCTCCGCTTCCC
GCTGTCCCCGCTACCGTTGCCGCTGCGCCGTCGCCTCTGCCGTCAACCAT
GGCTCCTGCTGCTGCGACG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig15041:386..754+

>mRNA_L-elsbetiae_contig15041.3623.1 ID=mRNA_L-elsbetiae_contig15041.3623.1|Name=mRNA_L-elsbetiae_contig15041.3623.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig15041:386..754+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCACCTCGAAGGGCGGTCGCGGCGGCGGCAGGGGTGACGGCGACGC
GGCCCCCGCGGCCGTCCTGCGCGGCACTCCCGGCGCCGTCGCCGCCCTGA
AAGCGCTCGACGAGGCGCTCAAGCGCGGCGTGAAGTGCGAGCAGCGGCAC
GAGGCGGAGATGCTTGGATTCATTCACGGGGATCCCCCTGGTTTCCCACG
GGCTCCCGTACCTGCTGCTGCTGCTGCGGATGCGGATGCGGATGCGGATG
CCGCTGCTGCGGATGCCGCTGCTGCGGGCACCGCCGCTCCTCCGCTTCCC
GCTGTCCCCGCTACCGTTGCCGCTGCGCCGTCGCCTCTGCCGTCAACCAT
GGCTCCTGCTGCTGCGACGGCGGCCACCTCGAAGGGCGGTCGCGGCGGCG
GCAGGGGTGACGGCGACGCGGCCCCCGCGGCCGTCCTGCGCGGCACTCCC
GGCGCCGTCGCCGCCCTGAAAGCGCTCGACGAGGCGCTCAAGCGCGGCGT
GAAGTGCGAGCAGCGGCACGAGGCGGAGATGCTTGGATTCATTCACGGGG
ATCCCCCTGGTTTCCCACGGGCTCCCGTACCTGCTGCTGCTGCTGCGGAT
GCGGATGCGGATGCGGATGCCGCTGCTGCGGATGCCGCTGCTGCGGGCAC
CGCCGCTCCTCCGCTTCCCGCTGTCCCCGCTACCGTTGCCGCTGCGCCGT
CGCCTCTGCCGTCAACCATGGCTCCTGCTGCTGCGACG
back to top