mRNA_L-elsbetiae_contig1503.3616.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1503.3616.1
Unique NamemRNA_L-elsbetiae_contig1503.3616.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1503.3616.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1503contigL-elsbetiae_contig1503:14843..15278 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size436
Cds size315
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1503.3616.1prot_L-elsbetiae_contig1503.3616.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1503 14896..15210 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7020383-UTR-L-elsbetiae_contig1503:14842..148951622815609.7020383-UTR-L-elsbetiae_contig1503:14842..14895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 14843..14895 +
1691682989.4305568-UTR-L-elsbetiae_contig1503:14842..148951691682989.4305568-UTR-L-elsbetiae_contig1503:14842..14895Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 14843..14895 +
1622815609.7247777-UTR-L-elsbetiae_contig1503:15210..152781622815609.7247777-UTR-L-elsbetiae_contig1503:15210..15278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 15211..15278 +
1691682989.446524-UTR-L-elsbetiae_contig1503:15210..152781691682989.446524-UTR-L-elsbetiae_contig1503:15210..15278Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 15211..15278 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7144227-CDS-L-elsbetiae_contig1503:14895..152101622815609.7144227-CDS-L-elsbetiae_contig1503:14895..15210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 14896..15210 +
1691682989.4392025-CDS-L-elsbetiae_contig1503:14895..152101691682989.4392025-CDS-L-elsbetiae_contig1503:14895..15210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 14896..15210 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1503.3616.1

>prot_L-elsbetiae_contig1503.3616.1 ID=prot_L-elsbetiae_contig1503.3616.1|Name=mRNA_L-elsbetiae_contig1503.3616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
MKVDDNYPNHEKFLLGFFFGSVTCEQPRKRVPLDRASPLETFRSGDDKIH
ARTTRFFFKKASALIPTPQISTPRLTSPFAALSAGERRERSNFHQTHAQT
VTAA*
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mRNA from alignment at L-elsbetiae_contig1503:14843..15278+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1503.3616.1 ID=mRNA_L-elsbetiae_contig1503.3616.1|Name=mRNA_L-elsbetiae_contig1503.3616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=436bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:14843..15278+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCCGGCCGTGAAACTAAACCGGAGGTCGGGGGCGGTAGCTCCGATTTC
CGTATGAAGGTCGATGACAACTACCCGAACCACGAGAAATTTCTACTGGG
CTTTTTTTTTGGTTCTGTGACGTGCGAACAGCCCAGAAAGCGAGTTCCGC
TAGATCGCGCGTCGCCGTTAGAAACGTTCCGCTCCGGAGATGATAAAATA
CATGCGCGCACAACACGGTTCTTTTTCAAAAAAGCTTCCGCGCTTATCCC
TACACCGCAGATTAGTACCCCCAGGCTCACTTCCCCCTTCGCTGCGCTCT
CTGCTGGCGAGAGAAGAGAGAGAAGCAACTTTCACCAAACGCACGCACAG
ACGGTGACAGCAGCCTGACAACGTCTGAGGACGGCGGCTCCCCACTGCAA
CCGTACTCGATACGTGCTTGGGCGTCCCACCAGCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1503:14843..15278+

>mRNA_L-elsbetiae_contig1503.3616.1 ID=mRNA_L-elsbetiae_contig1503.3616.1|Name=mRNA_L-elsbetiae_contig1503.3616.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:14843..15278+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGTCGATGACAACTACCCGAACCACGAGAAATTTCTACTGGGCTT
TTTTTTTGGTTCTGTGACGTGCGAACAGCCCAGAAAGCGAGTTCCGCTAG
ATCGCGCGTCGCCGTTAGAAACGTTCCGCTCCGGAGATGATAAAATACAT
GCGCGCACAACACGGTTCTTTTTCAAAAAAGCTTCCGCGCTTATCCCTAC
ACCGCAGATTAGTACCCCCAGGCTCACTTCCCCCTTCGCTGCGCTCTCTG
CTGGCGAGAGAAGAGAGAGAAGCAACTTTCACCAAACGCACGCACAGACG
GTGACAGCAGCCTGAATGAAGGTCGATGACAACTACCCGAACCACGAGAA
ATTTCTACTGGGCTTTTTTTTTGGTTCTGTGACGTGCGAACAGCCCAGAA
AGCGAGTTCCGCTAGATCGCGCGTCGCCGTTAGAAACGTTCCGCTCCGGA
GATGATAAAATACATGCGCGCACAACACGGTTCTTTTTCAAAAAAGCTTC
CGCGCTTATCCCTACACCGCAGATTAGTACCCCCAGGCTCACTTCCCCCT
TCGCTGCGCTCTCTGCTGGCGAGAGAAGAGAGAGAAGCAACTTTCACCAA
ACGCACGCACAGACGGTGACAGCAGCCTGA
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