mRNA_L-elsbetiae_contig1503.3614.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1503.3614.1
Unique NamemRNA_L-elsbetiae_contig1503.3614.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A6H5L1U7_9PHAE (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1U7_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 3.500e-65
Identity = 146/257 (56.81%), Postives = 162/257 (63.04%), Query Frame = 2 
Query:   23 RGEKWWNTAKAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPVRH-------DDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPEXDN-EVYDESDXXGADXXXXXGDGGAARGGGRKV----SGKRARRGFEERRERQEERRLALQALGPQGEWD 757
            RGEKWW+  KAIA+ELKPFS+P  +DV  A  +VRTNV Q+  EL RV P A+  V+ +NP   LGL AWLCGWALFIWLEFGAVYFIIS+MAMIF NLGER + EWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAP          D+                              +PE  N   YD   XX   XXXXX                 SGKRARRGFEER+ERQEERRLALQA+  Q EW+
Sbjct:   12 RGEKWWSLVKAIAFELKPFSLPGVEDVKAAAVAVRTNVRQLTDELVRVTPEALGAVKAVNPSRALGLMAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHQHGDGNEDDNHRGANNDQDEDFVWVEPEPVVRDVAAGDADEPEDGNGSEYDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGKRARRGFEERKERQEERRLALQAV-EQDEWN 267
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: D7FWA2_ECTSI (SAYSvFN domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWA2_ECTSI)

HSP 1 Score: 222 bits (565), Expect = 2.790e-63
Identity = 109/144 (75.69%), Postives = 119/144 (82.64%), Query Frame = 2 
Query:   23 RGEKWWNTAKAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPVRH 454
            R EKWW+  KAIA+ELKPFS+P+ +DV  A  +VRTNV QV  EL RV P AV  V+ +NPL  LGL AWLCGWALFIWLEFGAVYFIIS+MAMIF NLGER + EWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAP  H
Sbjct:   12 RREKWWSVVKAIAFELKPFSLPSVEDVKAAAVAVRTNVRQVVDELVRVTPEAVGAVKAVNPLRALGLLAWLCGWALFIWLEFGAVYFIISSMAMIFMNLGERGESEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPAHH 155
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A835Z1K3_9STRA (SAYSvFN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1K3_9STRA)

HSP 1 Score: 122 bits (306), Expect = 2.870e-27
Identity = 70/139 (50.36%), Postives = 90/139 (64.75%), Query Frame = 2 
Query:   35 WWNTAKAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWT----LGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGER-EDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 436
            WW   KA+A+EL+PF MPTR DV    +S  +N    AA L   A  A++V    + L +    L L AWL  W L    EFG V+ I+SA+A +F NLGE  E GE+SAYSVFNAGCRA+LGT++A+Q ERE+M Q+V
Sbjct:    7 WWEVVKAVAFELRPFPMPTRGDVAAYSRSALSN----AAALASAARAALAVTLRASTLVSVSGYLRLGAWLGAWWLCARAEFGVVFLILSAIAAMFVNLGEEGERGEFSAYSVFNAGCRAILGTLDAQQLERELMHQDV 141
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: F6RAW5_ORNAN (SAYSvFN domain-containing protein n=2 Tax=Ornithorhynchus anatinus TaxID=9258 RepID=F6RAW5_ORNAN)

HSP 1 Score: 75.1 bits (183), Expect = 1.320e-12
Identity = 37/78 (47.44%), Postives = 51/78 (65.38%), Query Frame = 2 
Query:  215 LGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANL---GEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVA 439
            L +  WL    LF+ LEFG  YF++S    I+      GE+++GEWSAYSVFN GC A+ GT+ AEQ ER+++ Q +A
Sbjct:   34 LKVLLWLVLLGLFVELEFGLPYFVLSLFYWIYVGTRGPGEKKEGEWSAYSVFNPGCEAIQGTLTAEQLERQLLNQPLA 111
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A1I7ZTY3_9BILA (SAYSvFN domain-containing protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I7ZTY3_9BILA)

HSP 1 Score: 79.0 bits (193), Expect = 1.450e-12
Identity = 36/75 (48.00%), Postives = 47/75 (62.67%), Query Frame = 2 
Query:  209 WTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQN 433
            WT     W    A   W+EFGAV+FI+    ++  NLG R +GE SAYSVFN GC  LLG + AE FE E++++N
Sbjct:  171 WTATFLVWALLQAFMAWIEFGAVFFIVFLFLLMILNLGNRSEGEVSAYSVFNPGCERLLGQMTAEHFESELLKRN 245
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A2H1X2F9_SPOFR (SFRICE_037305 (Fragment) n=3 Tax=Spodoptera TaxID=7106 RepID=A0A2H1X2F9_SPOFR)

HSP 1 Score: 76.3 bits (186), Expect = 2.470e-12
Identity = 40/74 (54.05%), Postives = 51/74 (68.92%), Query Frame = 2 
Query:  209 WTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGER--EDGEWSAYSVFNAGCRALLGTINAEQFEREIM 424
            WT+ L  W   WA+FI L+FGAVYF+I+ +  I+ N   R  + GE SAYSVFN  C ++ GT+ AEQFEREIM
Sbjct:   97 WTVYLCLWAVFWAVFIHLQFGAVYFVITVLIGIYLNTRTRPRKKGEVSAYSVFNQNCVSIDGTLKAEQFEREIM 170
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A6J2LF83_9CHIR (SAYSVFN motif domain containing 1 n=6 Tax=Phyllostomidae TaxID=9415 RepID=A0A6J2LF83_9CHIR)

HSP 1 Score: 76.3 bits (186), Expect = 3.030e-12
Identity = 44/125 (35.20%), Postives = 64/125 (51.20%), Query Frame = 2 
Query:   56 IAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANL---GEREDGEWSAYSVFNAGCRALLGTINAEQFEREI 421
            + W+ +P S   +  VV      R++  Q       + P        L  +  L +  WL    LF+ LEFG  YF++S    ++      GE+++GE SAYSVFN GC A+ GT+ AEQFERE+
Sbjct:   52 LVWKRRPESSQAQPSVVQEASQPRSSTSQPPRRTA-IPPPLPQDQSFLTSITFLKVLLWLVLLGLFVELEFGLAYFVLSLFYWMYVGTRGPGEKKEGEKSAYSVFNPGCEAIQGTLTAEQFEREL 175
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A2G9U1X5_TELCI (SAYSvFN domain-containing protein n=1 Tax=Teladorsagia circumcincta TaxID=45464 RepID=A0A2G9U1X5_TELCI)

HSP 1 Score: 74.7 bits (182), Expect = 4.750e-12
Identity = 35/66 (53.03%), Postives = 46/66 (69.70%), Query Frame = 2 
Query:  239 GWALFIWLEFGAVYFIISAMAMIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNV 436
            G A FIW+EFG V+F IS +  I  +LG R +GE SAYSVFN  C  LLG + AE FER+++R+ +
Sbjct:   84 GQAYFIWVEFGLVFFTISILLAICLSLGNRCEGEMSAYSVFNPNCERLLGQMTAEHFERDVLRRRI 149
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: UPI0007A6DC11 (SAYSvFN domain-containing protein 1 n=1 Tax=Miniopterus natalensis TaxID=291302 RepID=UPI0007A6DC11)

HSP 1 Score: 74.3 bits (181), Expect = 8.880e-12
Identity = 44/133 (33.08%), Postives = 67/133 (50.38%), Query Frame = 2 
Query:   50 KAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANL---GEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVA 439
            + + W+ +P S P +  +        ++  Q       + P        L  +  L +  WL    LF+ LEFG VYF++S    ++      GE++ GE SAYSVFN GC A+ GT+ AEQFERE+  + +A
Sbjct:   30 RLLVWKPRPASAPAQPGLAQEAARPGSHTSQPPRRTA-IPPPLPKDQSFLTSITFLKVLLWLILLGLFVELEFGLVYFVLSLFYWMYVGTRGPGEKKGGEKSAYSVFNPGCEAIQGTLTAEQFERELQLRPLA 161
[Close]
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Match: A0A7I8W5J8_9ANNE (DgyrCDS11346 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W5J8_9ANNE)

HSP 1 Score: 73.9 bits (180), Expect = 1.600e-11
Identity = 55/140 (39.29%), Postives = 75/140 (53.57%), Query Frame = 2 
Query:    2 MADAGAQRGEKWWNTAKAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAAELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMAMIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREI 421
            ++D  + R ++  N  KA    +K  S P    V      ++T +G+V          A+S  + L  L  +GL  WL  + LF+ LEFG V+ +IS   +IF NLG R+ GE SAYSVFN  C  L GT  AEQFERE+
Sbjct:   45 ISDKNSNRQKREENIFKAT---IKILSRPINDFV---SFFMKTKLGRVT--------NAISESKALIAL-KVGL--WLVLFGLFVELEFGFVFVVISIFFIIFINLGSRKRGEKSAYSVFNENCERLDGTFTAEQFEREL 167
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1503.3614.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L1U7_9PHAE3.500e-6556.81SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
D7FWA2_ECTSI2.790e-6375.69SAYSvFN domain-containing protein n=1 Tax=Ectocarp... [more]
A0A835Z1K3_9STRA2.870e-2750.36SAYSvFN domain-containing protein n=1 Tax=Tribonem... [more]
F6RAW5_ORNAN1.320e-1247.44SAYSvFN domain-containing protein n=2 Tax=Ornithor... [more]
A0A1I7ZTY3_9BILA1.450e-1248.00SAYSvFN domain-containing protein n=1 Tax=Steinern... [more]
A0A2H1X2F9_SPOFR2.470e-1254.05SFRICE_037305 (Fragment) n=3 Tax=Spodoptera TaxID=... [more]
A0A6J2LF83_9CHIR3.030e-1235.20SAYSVFN motif domain containing 1 n=6 Tax=Phyllost... [more]
A0A2G9U1X5_TELCI4.750e-1253.03SAYSvFN domain-containing protein n=1 Tax=Teladors... [more]
UPI0007A6DC118.880e-1233.08SAYSvFN domain-containing protein 1 n=1 Tax=Miniop... [more]
A0A7I8W5J8_9ANNE1.600e-1139.29DgyrCDS11346 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1503contigL-elsbetiae_contig1503:1155..7788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.6e-55
Seed eggNOG ortholog2880.D7FWA2
Preferred nameSAYSD1
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464
EggNOG free text desc.Uncharacterized conserved domain (SAYSvFN)
EggNOG OGsKOG3249@1,KOG3249@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionUncharacterised domain SAYSvFN
Ec32 orthologEc-01_003920.1
Exons3
Model size2340
Cds size759
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1503.3614.1prot_L-elsbetiae_contig1503.3614.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1503 1156..6208 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7986557-UTR-L-elsbetiae_contig1503:1154..11551622815609.7986557-UTR-L-elsbetiae_contig1503:1154..1155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 1155..1155 +
1691682989.4650767-UTR-L-elsbetiae_contig1503:1154..11551691682989.4650767-UTR-L-elsbetiae_contig1503:1154..1155Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 1155..1155 +
1622815609.8578818-UTR-L-elsbetiae_contig1503:6208..77881622815609.8578818-UTR-L-elsbetiae_contig1503:6208..7788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 6209..7788 +
1691682989.4997044-UTR-L-elsbetiae_contig1503:6208..77881691682989.4997044-UTR-L-elsbetiae_contig1503:6208..7788Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1503 6209..7788 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.8108509-CDS-L-elsbetiae_contig1503:1155..14231622815609.8108509-CDS-L-elsbetiae_contig1503:1155..1423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 1156..1423 +
1691682989.474499-CDS-L-elsbetiae_contig1503:1155..14231691682989.474499-CDS-L-elsbetiae_contig1503:1155..1423Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 1156..1423 +
1622815609.8267908-CDS-L-elsbetiae_contig1503:5458..55431622815609.8267908-CDS-L-elsbetiae_contig1503:5458..5543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 5459..5543 +
1691682989.4821205-CDS-L-elsbetiae_contig1503:5458..55431691682989.4821205-CDS-L-elsbetiae_contig1503:5458..5543Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 5459..5543 +
1622815609.8454611-CDS-L-elsbetiae_contig1503:5802..62081622815609.8454611-CDS-L-elsbetiae_contig1503:5802..6208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 5803..6208 +
1691682989.4901693-CDS-L-elsbetiae_contig1503:5802..62081691682989.4901693-CDS-L-elsbetiae_contig1503:5802..6208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1503 5803..6208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1503.3614.1

>prot_L-elsbetiae_contig1503.3614.1 ID=prot_L-elsbetiae_contig1503.3614.1|Name=mRNA_L-elsbetiae_contig1503.3614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=253bp
MADAGAQRGEKWWNTAKAIAWELKPFSMPTRQDVVNAGKSVRTNVGQVAA
ELKRVAPGAVSVVRGLNPLWTLGLFAWLCGWALFIWLEFGAVYFIISAMA
MIFANLGEREDGEWSAYSVFNAGCRALLGTINAEQFEREIMRQNVAAPVR
HDDDEEDDFVFVDQEPEQPGGGNAAAAAAGEGEDPEEDNEVYDESDDDGA
DADADAGDGGAARGGGRKVSGKRARRGFEERRERQEERRLALQALGPQGE
WD*
back to top

mRNA from alignment at L-elsbetiae_contig1503:1155..7788+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1503.3614.1 ID=mRNA_L-elsbetiae_contig1503.3614.1|Name=mRNA_L-elsbetiae_contig1503.3614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=6634bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:1155..7788+ (Laminarionema elsbetiae ELsaHSoW15)
CATGGCCGATGCAGGTGCACAGCGGGGGGAGAAGTGGTGGAACACCGCCA
AGGCAATAGCGTGGGAGCTCAAGCCTTTCTCGATGCCAACTCGACAAGAC
GTCGTGAACGCCGGCAAGTCTGTGAGGACCAACGTAGGCCAGGTCGCTGC
GGAGCTCAAGAGAGTGGCGCCTGGAGCCGTCAGTGTCGTGAGGGGTCTGA
ACCCCCTGTGGACCCTGGGGTTGTTCGCCTGGCTCTGTGGGTGGGCGCTC
TTCATCTGGCTCGAATTTGGTGAGGACACTCAAAAAAGCACCACTCTCTC
CCGTCATTGAAGAAGAGAGGAACGCGCACAAGACGCGAGTACCGTCACTC
CCTCTGCTCCCCTTTCGCCGATGCTTCAACGTTTTTCTTTATGCTCAGAA
TATATGCAGTCTCGGCCCACCACTCCGTGTTAGCCGAGTCGATAGCACAG
GCATTAGTGACGTGTGGTGGCCGTCGAATGCCCTGGGTTTTCAACTTTGT
GTTTTTTCCATTTCGTTCTCGTCGGAGAGAGAGAGGAGATGGGTCCTTTT
GCCTCTTCCCCGGGACCGCTTGATATTCCTATCAAACCCTCCCAACTATC
AAACCGTGTCTGCCTGTTGCCTGTAGTTGCATCTCGCGTCAGTGCTGATA
GCACGCCCTTGCAGAAAGCGACGGGTAGTTGTCTCTCCGCCGTGACTTGG
TTGCGAACGAAGCCGAGAGGCAATCTACTTACTTCTATGTCGCTAACAGC
GTGTACCTAACATACGTATCTACCGCGACCGGGGGGGGTCTTATCTAGCC
GAAGGTGTCTGCGTGTCTACGCAATGCGCCGCATCATGCAAAGCGCAGAT
GTTTGGCACGATGTGGTCGCTCTTCATACTCAAAACACCCTTCCAGGTGT
GTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTTGCGTGTGTCTATGTA
TGTTCGCCCCATTTATTCGGGCATCTGTCCACCACGTCTCTCGGTTTGCC
AGACCGTCGGTGTGGTGGATATATTTACTACGGCAGATCGCGTTTCGGTG
CATGTATTCTCACAACATGTACATACTTATGTACTTCCAGTTAAATATAA
ATCAGCGAATCAAAAATGGCACCAAGTCGTGTAATACCACGAGGCGTAAC
CGTCGGGGTCCCAAGAGAGATTGAAACACTGCTGTTGTTTTCTTTCTTGT
TTTTAATATTTTGCCCCACCTTCCTCCTGCGGTGCTTGCCTTTACTTTCA
TCGCGAGAAGGCAGGGTTCAGCCGTCCTCTTTCCCTCGTCAACGGTGAAG
TCGAGGAGGTTTATTTCTCACGCGGGCTTATAGGACAAAATGACACTCGT
GCATAGTTTAAACGTTAACGTTTATTGTTGTGAATGAGAACGTACCTTCG
ATTTTGGAGCCATTACTCTCTCTCTCTCGCATCACACAGACATAGCCCCC
CTACATCCAATACTACATTTCGTGGCCAAGAGGTACTCAGACCTCACTGG
TTGGATTCCCCCCTCTTTGTGTACCAGCAGCAGTGGTAGATCAGCATCGC
AGAGAACGACGAAAGGGCACACATGTAAATATTAATATGAACTTTCACCT
GGCACTATTTCAAAGCCTCAGGCCTCTCACAACGAACGAGGGATCATGTA
CAAATTTATGTATGTACAAGGGCGCTTCGCGGCGGCCCGCTATCGCGGGC
CGCGCTACGCGATAGGCCCGTAGAGACGATGGCAAGTGTTTGAACTTTGT
ATGTCCACAGGTTTTGTGCGTCTTGTGGAGGTCCGCGGGTTTGCGCGGGC
AATTTTTTTCGCCCGCCGCGGGACTGTGATCGCTGTTTGCCGGTAATTGG
CCGAGGATTCGTAGACTTGGGAGATGTGACTTTGCGCGTCGCTAGCGCTG
CGCTGCGAGCCTTCCCCACGGCGAGGGCGCACGGGCAGGGCCCTCGCAGC
CGAGGGCTACCGGCAGGCGCAAAGATTTCGGCGAGGCGAGGTCGACGGAC
CGAGAAATCCCCAAAAAGTAGGCTCTAGGCTCCTGAGCGAGAGGCTTGAG
CAATATAGTCTATATATCTACAAGGACGCGGCCCCGCTTTATTGAAATCG
CTTCCAAGGCAATGCTAAACATAGTCATATCTTATGTATTTGTGGAGGTG
TCACAAATCTGCACAAATCGGCAGCAGCAATTGCTTTTTTAACAATACTT
CCGAAAAACACCCGTCAGTATGAGGCGAATGCCAGCTTCCACCAGCGACT
TCATTCATTAGAGTGCACGTAAAGGATGAGCAGAGGTGTGCCCTCCGTAT
TTGGCGGCGCTGCCGTGGAGTGTAGCCGTGTACACCATCTTGCACAATCT
GTATCGAGAGTGCCTCGGGGAGACACGTTCGGCTCGCGCTTGACCCCTTC
GGCGAGCCGAAACGAAGTTTCAAGGGAGAGTCAAATGATTAAAAATTCCA
TGTTTGTCTAGAGACAGAGAGACAGAGACGGAAAGAGAGGAACCTGTACA
CAGGGAAAGTGAGCCAGAGTAAGAAGGCTTGAATTGTACTGTGAAGGGTG
TGTGGCTACAGAGGACGTGCTGATGATGTGGGAGCGGAGCGATAAATCCG
AAATAGAGGCCTCTCGAACCGAGAGTCACACATAAATTCAAATCGATAAA
CGGACACGACAACAAACAACAACAGGATGCGGTCTGAACACCGGCCAGGA
CTCACACATCTCATTTCAAACCGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGGAGGATGTGGGTTGCGAGAGAGAGAGGTGGTTGGAGGCGGTGC
AAAGCGCTTAATTCCGCCTCGGGAAGATGGTGCCGGACAGGTTCCCACGC
GAGAGTCTTCATTCAAAAAAACTAATGCAACTGCTCTGCATGCAGAGAGC
GAGAGAGAGAGAGAGAGAGAGAGAGAGGAGGTAGGACCCGAAATCCATTC
CCAACGGGTCAAATGGTGACCTCACAGGGCCCGAAAAGTCCGAATACTCC
GCTCACAGAGGCCGAGAGGCGGTGAAATGCAGGCTTCTCACGAAAAAGTC
AATTCTTGATAGATTTATATACATGGCCGACATTGTGCAAGGACCGTCCT
CGCGAAGAAATTTAACATTTTATCTCGGAAAAGAGAGACAGAGGCTCCGT
AACCATGACCCTAACCCCCGACCCCTTTACCGATTCCTTATGTATGTAAG
GATAAAGTATGTTTGTTGTCTTCACATTAAAAACCGTTCCGATCTCTCCA
TCCAGTACCTCTCAATGTCCGTACTAATCTAACACTTGATGCGGTCAATT
CCCGTGGTCACAGGCTAACTTATACCCAAGAAAAGGTACACGAAAAATAA
AATGGACCCGAAGGGCCAGCAAAGCAATAATATAACAGATATCGAATCTG
GAGCCCTCCGCTCCCCTCTACACGCTATGTGAGGTAAAAACACAACTGGA
ACAGCCAACACGACTATCTTGGTACCCCCACAAAGCCGGGGGGTTCCGCG
CCGGGTTATCGCCTAGTTTATCCCATTATGTTAGCTCAAGACAAATTCTG
CGAAGGCTGCTACTGAAGACGAAACAGACAGCAGTACACCCAGGTTTTGT
GGGTGTTGTTTAAAGTTAAAAGTTATGATGCAGTGAGTGGCGCTTCCAGT
CGCTCTTCGATGATTCGGAAGTCCATGAATATGTATAACCGGTACATATG
TACAACAGTGTTATTGCACTTCGAATTGTGTGCGTAAAACATATGTACTT
GAACATATATACATTCATAACATGTTTCGTAGATAAGGCATCAAGCGAAT
GCCCTGGAAGAGTGCACGGGTTCTGCTCCCCGGGTTGGTGCGTCCGTTCT
CGCGGGTTTTGTTTATATCGTGTTCATGCCCCCTGCAACAGATCAAGTGC
TTGTGTATGTCAGGAGTTTTGGGTAGGCCACGCTGTTCTATTGCACCTCA
ACGTAAGCAATCGTCAAAGGTCGAAAGGGATATGTACACGGGGGCGCCGT
TAAATGTTCAATTACAGCATTTCTACAGCATAGGGCGCGGGAGGAAGAGT
AAGGAACGCCGGCGCTGCTGGAGTGGGTACACAGTAGTATGAAGTGACGA
ACCACCCCGTATGTGACGTCGGCGCTTGCACATTTTTTTGTATCTAGCTT
TTGTTGGAAGATTGTGTCGACAAGCCCGCTGCTGACCCAACAGCGTAGTA
GTAGTAGTAGTAGTAGCAGCAGGGCTGGACATGAGTGTGATTGTCGGCGA
CTCTCCCACACCCTCCCCCTTCGTGCCGTTACCATCACCCCGTATCGTTT
GCAGGTGCGGTGTACTTCATCATCTCTGCCATGGCGATGATCTTTGCCAA
CCTCGGCGAGCGCGAAGACGGCGAGTGGTCCGCGTACAGGTGAGAGAAGA
GAGGGAGGGCAGACAGACAGACGGTGTCTCCGTGAAGAAGTCCACCGTGG
GAGAAAACCCTAGTATTCAGAACATTTGAGCTTTAGCCTGTAGGTTCCAC
ATGGCACACAGGCAGGCCAGCACCACCGTGCGGCGCTGGCGTCCAAGAAT
GAATGAAGCAGCACCCAGCACCCGAGAAAGAGAGCGCTCTAACGAAATAG
CTTGGCCTCCCTCTCCCCCGCCGGCTGCCCTTGTTTATCATCCGGCAGCG
TTTTCAACGCGGGCTGTCGCGCGCTGCTGGGCACGATCAACGCGGAGCAA
TTCGAGCGCGAGATCATGCGCCAGAACGTTGCCGCCCCTGTCCGCCACGA
TGACGACGAGGAGGACGACTTCGTATTCGTGGATCAGGAGCCGGAACAGC
CGGGGGGGGGCAACGCCGCCGCCGCTGCCGCCGGTGAAGGCGAAGACCCC
GAAGAAGACAACGAAGTCTACGACGAGAGTGATGATGACGGTGCTGATGC
TGATGCTGATGCCGGTGATGGCGGGGCTGCCAGAGGTGGAGGGCGGAAGG
TCAGCGGGAAGCGTGCCCGCCGGGGGTTTGAGGAGAGGAGGGAGAGGCAG
GAGGAGAGGAGGCTGGCGCTGCAGGCGCTGGGGCCGCAGGGGGAGTGGGA
CTGAACCGTTTGGCCGCGCTGTTAAACCCACAAGTGGCGGGGCGACTATT
TTGGCTGTTTTCGGTCGAGCTTTGGCGGAGATAAGAAGGGAGGCCCTGCT
GAGCGTCGACAAAAGCTGGAACGGAGAGTGGAAGTGGATGGTTTTGTGGT
GTTGTTGCGCCCAAGAGTCGTGGGATTTCGCGGCGTTGGCATCATTTTGA
AGCGGGAAGGTTTCGCGGAGAGTGTGTAGGGTTCCGAGAAAACGTGACCA
TGCGTGGGGGTGCTTGCTGCTCGTGTTTTGGCTCTGGCGTACTACGCGCA
CCAAAGGCCGCCTTCGGAACCCCCCCTCGCAACGCCTTCTCTATGCACAT
CGCTCCCCCGTCTTTTTCGGGGTCTGTACAAAAATCGGGTCGAGGGTGAT
TGGGATTCCAGTACCATATCTATCGTGTTTTGTGGGTTCTATGTTCTGTT
TCTTGCAACTTTGAACCGGAAGTCTTCCTTAAGTTTTTACCGCCGTGTTT
GTTTTCTGGTTCACAGCTTGCCGATGAGGGCGGACGGACCACGGTGAAGC
ATAAAAAAAAGAGTAGAACGGAGTTTGTTTTTTCCTGAGCGTTCTCTAAT
GGTCGCTAGGGTGAACAGCTGCAACCGCGCGCCGTGTGAAAACGCGTCAT
TGGTATGTATATGTACATATCATAGCTTCATGTATGGGTATGTGCAACAG
TGTTAGTTCAAGGGTAGTAGGCAGGGAGATAAAGCGGCTTGCGGAAGTCT
AATCAATGGCGGTATGCAGGCAGGCGTTTACCGCGGTGGTCTACTGTACT
TGTGGGTGGAAAGAGACGCGTGGTTTTACTGGCCGCTCTCGCGCTGATAT
CGCGCAAGTATGTACAAGTCGAGAGCGCTGGCGCATCTACGATGTGCCCA
GGATTATGTGGTGTACCATGGGGCTCCTGTATTATCCTAGTTAGGCTGCT
TGCCCCGACGGTGAACACATGACACGGCCCATATCTCTCTGTGGTGCAGA
ACAAGTGAATATATGCACTCCGTGCGAGAAAGGCGTGTTATTGTTGCTGT
AAATATCGTAGCTTAAGTAATCGGCGTGCCCCCGGGGGGTGTCTGTGGGC
GGGACCGCTCGTGTGTAGAATCCCTTCCTTTTGTGGAAACCTCTTGAAAC
CGTACTCGGGGCAAGGAGAGAAGATTTTGGTTGTTGACATCCACGATGCA
TACAGATCTTGATTGGTGTTGGCGGGATTTTTTGCTGTTATTTTTTGCTG
TCATTTGTATTTTGAGTCCATGCTGTACTCGAGGAGCTCGTCGAGGTTTC
ACCGTCAACAGAGCTGGCAAGATGACTACGAGAGGCAAGAAGTTTCTTCG
TCAACATTTTTGAATCGAATCTTGCTCATTAGCGCGGACAACACGAGGGG
CGGCGGGGGGGATGGGGCGAAGATACAGTCAGTGAGTTACAGGGAACGGC
GTGTGTGCTACCGAGGGTTTTCACGATGCTGCAAGCTCCGCTCCTCTACA
AAACCCCGCGTTGGTGAGGTACCTAGTTTGTGACGGTCCTAGCGCCAGAG
GGGCGTGAAGACTTGGTTTCTGTTCCGCCAGCAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1503:1155..7788+

>mRNA_L-elsbetiae_contig1503.3614.1 ID=mRNA_L-elsbetiae_contig1503.3614.1|Name=mRNA_L-elsbetiae_contig1503.3614.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1518bp|location=Sequence derived from alignment at L-elsbetiae_contig1503:1155..7788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCGATGCAGGTGCACAGCGGGGGGAGAAGTGGTGGAACACCGCCAA
GGCAATAGCGTGGGAGCTCAAGCCTTTCTCGATGCCAACTCGACAAGACG
TCGTGAACGCCGGCAAGTCTGTGAGGACCAACGTAGGCCAGGTCGCTGCG
GAGCTCAAGAGAGTGGCGCCTGGAGCCGTCAGTGTCGTGAGGGGTCTGAA
CCCCCTGTGGACCCTGGGGTTGTTCGCCTGGCTCTGTGGGTGGGCGCTCT
TCATCTGGCTCGAATTTGATGGCCGATGCAGGTGCACAGCGGGGGGAGAA
GTGGTGGAACACCGCCAAGGCAATAGCGTGGGAGCTCAAGCCTTTCTCGA
TGCCAACTCGACAAGACGTCGTGAACGCCGGCAAGTCTGTGAGGACCAAC
GTAGGCCAGGTCGCTGCGGAGCTCAAGAGAGTGGCGCCTGGAGCCGTCAG
TGTCGTGAGGGGTCTGAACCCCCTGTGGACCCTGGGGTTGTTCGCCTGGC
TCTGTGGGTGGGCGCTCTTCATCTGGCTCGAATTTGGTGCGGTGTACTTC
ATCATCTCTGCCATGGCGATGATCTTTGCCAACCTCGGCGAGCGCGAAGA
CGGCGAGTGGTCCGCGTACAGGTGCGGTGTACTTCATCATCTCTGCCATG
GCGATGATCTTTGCCAACCTCGGCGAGCGCGAAGACGGCGAGTGGTCCGC
GTACAGCGTTTTCAACGCGGGCTGTCGCGCGCTGCTGGGCACGATCAACG
CGGAGCAATTCGAGCGCGAGATCATGCGCCAGAACGTTGCCGCCCCTGTC
CGCCACGATGACGACGAGGAGGACGACTTCGTATTCGTGGATCAGGAGCC
GGAACAGCCGGGGGGGGGCAACGCCGCCGCCGCTGCCGCCGGTGAAGGCG
AAGACCCCGAAGAAGACAACGAAGTCTACGACGAGAGTGATGATGACGGT
GCTGATGCTGATGCTGATGCCGGTGATGGCGGGGCTGCCAGAGGTGGAGG
GCGGAAGGTCAGCGGGAAGCGTGCCCGCCGGGGGTTTGAGGAGAGGAGGG
AGAGGCAGGAGGAGAGGAGGCTGGCGCTGCAGGCGCTGGGGCCGCAGGGG
GAGTGGGACTGACGTTTTCAACGCGGGCTGTCGCGCGCTGCTGGGCACGA
TCAACGCGGAGCAATTCGAGCGCGAGATCATGCGCCAGAACGTTGCCGCC
CCTGTCCGCCACGATGACGACGAGGAGGACGACTTCGTATTCGTGGATCA
GGAGCCGGAACAGCCGGGGGGGGGCAACGCCGCCGCCGCTGCCGCCGGTG
AAGGCGAAGACCCCGAAGAAGACAACGAAGTCTACGACGAGAGTGATGAT
GACGGTGCTGATGCTGATGCTGATGCCGGTGATGGCGGGGCTGCCAGAGG
TGGAGGGCGGAAGGTCAGCGGGAAGCGTGCCCGCCGGGGGTTTGAGGAGA
GGAGGGAGAGGCAGGAGGAGAGGAGGCTGGCGCTGCAGGCGCTGGGGCCG
CAGGGGGAGTGGGACTGA
back to top