mRNA_L-elsbetiae_contig15022.3611.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15022.3611.1
Unique NamemRNA_L-elsbetiae_contig15022.3611.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15022.3611.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15022contigL-elsbetiae_contig15022:2..674 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size674
Cds size591
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.562356-UTR-L-elsbetiae_contig15022:1..831622815609.562356-UTR-L-elsbetiae_contig15022:1..83Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15022 2..83 +
1691682989.3785934-UTR-L-elsbetiae_contig15022:1..831691682989.3785934-UTR-L-elsbetiae_contig15022:1..83Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15022 2..83 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.5769548-CDS-L-elsbetiae_contig15022:83..6741622815609.5769548-CDS-L-elsbetiae_contig15022:83..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15022 84..674 +
1691682989.3869066-CDS-L-elsbetiae_contig15022:83..6741691682989.3869066-CDS-L-elsbetiae_contig15022:83..674Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15022 84..674 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15022.3611.1prot_L-elsbetiae_contig15022.3611.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15022 84..674 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15022.3611.1

>prot_L-elsbetiae_contig15022.3611.1 ID=prot_L-elsbetiae_contig15022.3611.1|Name=mRNA_L-elsbetiae_contig15022.3611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=197bp
MEGGGGSVDRTLEEKSTAAPEKREPKKKHTHARRRALVHSARVSGLPRPA
MRFQASLGCSYTTRHFENRRRTCPGPLSDCPTRRSNTSKTLPTTMSDFAL
KIVTSSLPSKATRAFSSPSSLSLRRRSTHATAASTLETPKKEEPDHQDWL
GLKTHAEKDKQMRRQPENGDKVRNVIFPSLREMYRPACTEPSVRTAS
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mRNA from alignment at L-elsbetiae_contig15022:2..674+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15022.3611.1 ID=mRNA_L-elsbetiae_contig15022.3611.1|Name=mRNA_L-elsbetiae_contig15022.3611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=673bp|location=Sequence derived from alignment at L-elsbetiae_contig15022:2..674+ (Laminarionema elsbetiae ELsaHSoW15)
GCACACTGACCCGACACCGCCACGGAAAAACGGGAAATGTGTATGTTTGG
AAAAAAAAAATTAAAAGGAAAAAAAAAATAAAATGGAGGGGGGGGGGGGG
TCTGTCGATCGAACACTCGAGGAAAAGAGCACAGCAGCACCCGAAAAGAG
AGAGCCAAAAAAAAAACACACACACGCCAGAAGAAGAGCACTGGTACACA
GCGCGCGCGTGTCCGGCCTACCTAGACCGGCGATGCGTTTTCAGGCAAGC
CTTGGTTGCAGCTACACGACGAGGCATTTCGAAAACCGTCGTCGTACATG
TCCAGGACCACTTTCCGACTGTCCAACTAGGCGGAGCAATACCTCGAAGA
CCTTACCCACCACCATGTCTGACTTTGCCTTGAAGATCGTTACCTCTTCG
TTACCATCCAAAGCGACTAGGGCATTTTCCTCTCCGTCGAGTTTGTCGCT
GCGAAGGAGGTCGACTCACGCCACGGCCGCATCAACGCTCGAAACACCAA
AGAAAGAAGAACCCGACCATCAGGATTGGTTGGGACTCAAAACACACGCC
GAAAAAGACAAACAAATGAGGAGGCAGCCCGAGAACGGCGACAAAGTTCG
CAATGTAATATTTCCATCGCTCAGGGAGATGTATCGACCAGCTTGCACTG
AACCCTCCGTGCGCACGGCAAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15022:2..674+

>mRNA_L-elsbetiae_contig15022.3611.1 ID=mRNA_L-elsbetiae_contig15022.3611.1|Name=mRNA_L-elsbetiae_contig15022.3611.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1182bp|location=Sequence derived from alignment at L-elsbetiae_contig15022:2..674+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGGGGGGGGGGGGGTCTGTCGATCGAACACTCGAGGAAAAGAGCAC
AGCAGCACCCGAAAAGAGAGAGCCAAAAAAAAAACACACACACGCCAGAA
GAAGAGCACTGGTACACAGCGCGCGCGTGTCCGGCCTACCTAGACCGGCG
ATGCGTTTTCAGGCAAGCCTTGGTTGCAGCTACACGACGAGGCATTTCGA
AAACCGTCGTCGTACATGTCCAGGACCACTTTCCGACTGTCCAACTAGGC
GGAGCAATACCTCGAAGACCTTACCCACCACCATGTCTGACTTTGCCTTG
AAGATCGTTACCTCTTCGTTACCATCCAAAGCGACTAGGGCATTTTCCTC
TCCGTCGAGTTTGTCGCTGCGAAGGAGGTCGACTCACGCCACGGCCGCAT
CAACGCTCGAAACACCAAAGAAAGAAGAACCCGACCATCAGGATTGGTTG
GGACTCAAAACACACGCCGAAAAAGACAAACAAATGAGGAGGCAGCCCGA
GAACGGCGACAAAGTTCGCAATGTAATATTTCCATCGCTCAGGGAGATGT
ATCGACCAGCTTGCACTGAACCCTCCGTGCGCACGGCAAGTATGGAGGGG
GGGGGGGGGTCTGTCGATCGAACACTCGAGGAAAAGAGCACAGCAGCACC
CGAAAAGAGAGAGCCAAAAAAAAAACACACACACGCCAGAAGAAGAGCAC
TGGTACACAGCGCGCGCGTGTCCGGCCTACCTAGACCGGCGATGCGTTTT
CAGGCAAGCCTTGGTTGCAGCTACACGACGAGGCATTTCGAAAACCGTCG
TCGTACATGTCCAGGACCACTTTCCGACTGTCCAACTAGGCGGAGCAATA
CCTCGAAGACCTTACCCACCACCATGTCTGACTTTGCCTTGAAGATCGTT
ACCTCTTCGTTACCATCCAAAGCGACTAGGGCATTTTCCTCTCCGTCGAG
TTTGTCGCTGCGAAGGAGGTCGACTCACGCCACGGCCGCATCAACGCTCG
AAACACCAAAGAAAGAAGAACCCGACCATCAGGATTGGTTGGGACTCAAA
ACACACGCCGAAAAAGACAAACAAATGAGGAGGCAGCCCGAGAACGGCGA
CAAAGTTCGCAATGTAATATTTCCATCGCTCAGGGAGATGTATCGACCAG
CTTGCACTGAACCCTCCGTGCGCACGGCAAGT
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