mRNA_L-elsbetiae_contig15016.3609.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15016.3609.1
Unique NamemRNA_L-elsbetiae_contig15016.3609.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15016.3609.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15016contigL-elsbetiae_contig15016:1939..4323 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionNC2alpha class protein with histone-like transcription factor (NF-YC subunit) domain
Ec32 orthologEc-01_000530.1
Exons4
Model size1395
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15016.3609.1prot_L-elsbetiae_contig15016.3609.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15016 1964..3667 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.046207-UTR-L-elsbetiae_contig15016:1938..19631622815609.046207-UTR-L-elsbetiae_contig15016:1938..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15016 1939..1963 +
1691682989.021958-UTR-L-elsbetiae_contig15016:1938..19631691682989.021958-UTR-L-elsbetiae_contig15016:1938..1963Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15016 1939..1963 +
1622815609.141047-UTR-L-elsbetiae_contig15016:3667..43231622815609.141047-UTR-L-elsbetiae_contig15016:3667..4323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15016 3668..4323 +
1691682989.0759535-UTR-L-elsbetiae_contig15016:3667..43231691682989.0759535-UTR-L-elsbetiae_contig15016:3667..4323Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15016 3668..4323 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.0897138-CDS-L-elsbetiae_contig15016:1963..20261622815609.0897138-CDS-L-elsbetiae_contig15016:1963..2026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 1964..2026 +
1691682989.0315378-CDS-L-elsbetiae_contig15016:1963..20261691682989.0315378-CDS-L-elsbetiae_contig15016:1963..2026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 1964..2026 +
1622815609.1036646-CDS-L-elsbetiae_contig15016:2205..22781622815609.1036646-CDS-L-elsbetiae_contig15016:2205..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 2206..2278 +
1691682989.0422945-CDS-L-elsbetiae_contig15016:2205..22781691682989.0422945-CDS-L-elsbetiae_contig15016:2205..2278Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 2206..2278 +
1622815609.118607-CDS-L-elsbetiae_contig15016:2725..28731622815609.118607-CDS-L-elsbetiae_contig15016:2725..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 2726..2873 +
1691682989.0565321-CDS-L-elsbetiae_contig15016:2725..28731691682989.0565321-CDS-L-elsbetiae_contig15016:2725..2873Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 2726..2873 +
1622815609.1309114-CDS-L-elsbetiae_contig15016:3237..36671622815609.1309114-CDS-L-elsbetiae_contig15016:3237..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 3238..3667 +
1691682989.0672548-CDS-L-elsbetiae_contig15016:3237..36671691682989.0672548-CDS-L-elsbetiae_contig15016:3237..3667Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15016 3238..3667 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15016.3609.1

>prot_L-elsbetiae_contig15016.3609.1 ID=prot_L-elsbetiae_contig15016.3609.1|Name=mRNA_L-elsbetiae_contig15016.3609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MAKSWRLENHRDVASAPPLGLSKVKAIAQQDESIGRMGVGAISLIARCTD
AFLADLVGASAERARAAGHREPNKKVSKRSATSKAPPQQVLPEDVRKAVT
EEERFDFLQPILEPPQDSDSLGAVGAAGAKGKRKSGPTSGRAGTGGAGAR
KKGKKRMGSTEFAGVGAAGSGATSAPGIKPSGSATTSVAGAGSGGLLALA
GLDEEGRRRALLGVLDTKPPAASGLGDDEDEDYDNYC*
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mRNA from alignment at L-elsbetiae_contig15016:1939..4323+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15016.3609.1 ID=mRNA_L-elsbetiae_contig15016.3609.1|Name=mRNA_L-elsbetiae_contig15016.3609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2385bp|location=Sequence derived from alignment at L-elsbetiae_contig15016:1939..4323+ (Laminarionema elsbetiae ELsaHSoW15)
AAGGACAGGAGAGAACAAAGTGGCGATGGCAAAAAGCTGGAGGTTGGAGA
ACCATCGCGATGTAGCGTCGGCACCTCCTCTTGGATTGGTAAGAAGAAAG
CAAGTATATCCGCACGTGAAAATATGAAAGGTACCTATCTATGTTGTAGA
GACCTTGTATGTGTTTCTAGACCTAGATAATCGTGTACAGAGCATGTACC
AGCCCAGGCCGAAAGTGTTCCGTCAACTGCTCTGCCCATTATCTTTCCTC
TTGCATGTGTGTGACAGTCAAAGGTGAAGGCTATAGCGCAGCAGGACGAA
TCGATTGGAAGGATGGGGGTGGGAGCGATATCCTTGATTGGTAAGTGACG
CTCGCATATTATTTATAGTTGCGGAGCAACTGCCTTCCCTGCTGTAATGT
AGACGCGAGGATGCGAGGATGGATGGTGTGTAGATTATGGGCCAGCCAGC
GTGCGCACTATCTCGCACCATTTCTATGTCTATCGGGTAGGTTGCAGGAG
AGTTTCGCAAGTTACAGAGTGAATGTGTCGGCCGCCTGTCTCTAGAGGCC
GTCGGGTTGCGACTGGAACCATCACTGTCAACCGCCACATACTGGGGCCC
TCGACTTGCAAGTTTGTACCCTACATACATTTGTAGTGTTCGCCTCAAGT
CGCTAGCTATGTCCAAGACTGAAAAAGTGCCCTGCGGAATGTCAGCCCAC
AACAGTAAGACGATGTTGTAGCCGCCTGCGATTATCTACTGAGAGTGTCA
TCCGTCTCCCTCGCTCCGCACCCGTACCGGCGCCCAGCACGATGCACGGA
CGCTTTCCTGGCCGACCTGGTAGGAGCATCCGCCGAAAGGGCGAGGGCCG
CGGGACACCGGGAGCCCAACAAAAAAGTCAGCAAGCGCTCAGCAACGTCG
AAAGCCCCCCCGCAGCAGGTTCTGCCGGAAGACGTGTGAGTAAAACGCGT
TACCTCCTTCTGCTGCACCACAAGATACGGCGAAGAGTCTGCTATAACCT
GCACTACTACTACTGTGTGTGTGTGTTCAAGGTTGTATATACCATCTGGT
ATGCTTCCTGCAATGTACAGCTGTGACGCTCGAATCCTGGGCAAAGGAAC
AGCACTTTTTGTTGCGGTGCAGGCTAACTTATGTCTAACCCGCGGGGTTC
CCCTTTCGGCCAGAGAGTCGCCTTAGGGGGGCGTTGAAAAGGTACGTATT
TTTTTTTTCGGAGGACGTGGCATACATACCAGCATACCTGAACCGACAAG
CTCCATCCCGTCTTATCGCCACCTTGGCCGTTTGTCACCGTATGCACAGG
CGAAAAGCCGTCACAGAGGAGGAGCGGTTCGATTTTTTGCAACCAATTCT
CGAGCCGCCGCAAGATAGCGACTCCCTCGGCGCCGTCGGCGCCGCGGGAG
CCAAGGGGAAGCGAAAAAGCGGCCCCACTTCCGGCCGAGCGGGAACAGGG
GGTGCGGGAGCAAGGAAGAAGGGGAAGAAGCGGATGGGCAGCACGGAGTT
TGCAGGCGTAGGCGCGGCAGGAAGTGGGGCGACGAGTGCGCCAGGTATCA
AACCGTCAGGAAGCGCGACGACCTCAGTCGCCGGGGCGGGGAGTGGTGGT
TTGTTGGCGTTAGCGGGGCTTGATGAGGAGGGACGACGGCGGGCTTTATT
GGGAGTGCTGGACACCAAACCTCCGGCGGCGTCCGGGCTAGGAGACGACG
AAGACGAGGACTACGATAACTACTGTTGATAAACTTTATTTAGCGTCAAG
GGCTCATATTAATTTGGAATTCGTATGGCCTGCCAGCTGTTGATCTGGGA
TAAAATAATGGATTTAGGGCAACGGCCAAAACAAGGTACACCTTGTACTT
TTCCGGCCAAAACAAGGTATTACATGTGGTACCGAACATCAACGTGCCTC
GCACCTACTAAAGCCCTCGGATACATAGAATCTCGGAGGCTGTCCCATGG
CCGCCATCAAAGTAGGGCACAACCCGCGCACAGCGTCAATGGATGTCTAC
ATACTATCTACATACACATGCTCGAGGGTGGGGTAGACGCTCCGCCGTGC
AACTACGCACGGCTGCAATGACCCTCGTTTGTACAACAGTAGTGTGACGG
CGGCGCTACCCAGTTGGCTTATTGGGGTAGGGTAAGTAGCGCATTTGGTT
TAGATCCGGCATGATGAGAAAATGTAAGCAGCAAGGGCACTTTTCTCGTG
GGTCAGTAGGGCCACTAAGGCCCTGGTCCCCGACGAAGAACCCCGCGGTT
TCCGGCCAAAGGAGGGTGAACGAGCGGCAAAACAAGGTGTAGCTGGAAGC
TGAGTAGCCACGCGAAGGTGTACCGCGTACTTTTTCGGCCAAAAGAAGGT
GCTTGGTAGGAATTTTCACTTGAACCCAAAGTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15016:1939..4323+

>mRNA_L-elsbetiae_contig15016.3609.1 ID=mRNA_L-elsbetiae_contig15016.3609.1|Name=mRNA_L-elsbetiae_contig15016.3609.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig15016:1939..4323+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAAAAAGCTGGAGGTTGGAGAACCATCGCGATGTAGCGTCGGCACC
TCCTCTTGGATTGATGGCAAAAAGCTGGAGGTTGGAGAACCATCGCGATG
TAGCGTCGGCACCTCCTCTTGGATTGTCAAAGGTGAAGGCTATAGCGCAG
CAGGACGAATCGATTGGAAGGATGGGGGTGGGAGCGATATCCTTGATTGT
CAAAGGTGAAGGCTATAGCGCAGCAGGACGAATCGATTGGAAGGATGGGG
GTGGGAGCGATATCCTTGATTGCACGATGCACGGACGCTTTCCTGGCCGA
CCTGGTAGGAGCATCCGCCGAAAGGGCGAGGGCCGCGGGACACCGGGAGC
CCAACAAAAAAGTCAGCAAGCGCTCAGCAACGTCGAAAGCCCCCCCGCAG
CAGGTTCTGCCGGAAGACGTCACGATGCACGGACGCTTTCCTGGCCGACC
TGGTAGGAGCATCCGCCGAAAGGGCGAGGGCCGCGGGACACCGGGAGCCC
AACAAAAAAGTCAGCAAGCGCTCAGCAACGTCGAAAGCCCCCCCGCAGCA
GGTTCTGCCGGAAGACGTGCGAAAAGCCGTCACAGAGGAGGAGCGGTTCG
ATTTTTTGCAACCAATTCTCGAGCCGCCGCAAGATAGCGACTCCCTCGGC
GCCGTCGGCGCCGCGGGAGCCAAGGGGAAGCGAAAAAGCGGCCCCACTTC
CGGCCGAGCGGGAACAGGGGGTGCGGGAGCAAGGAAGAAGGGGAAGAAGC
GGATGGGCAGCACGGAGTTTGCAGGCGTAGGCGCGGCAGGAAGTGGGGCG
ACGAGTGCGCCAGGTATCAAACCGTCAGGAAGCGCGACGACCTCAGTCGC
CGGGGCGGGGAGTGGTGGTTTGTTGGCGTTAGCGGGGCTTGATGAGGAGG
GACGACGGCGGGCTTTATTGGGAGTGCTGGACACCAAACCTCCGGCGGCG
TCCGGGCTAGGAGACGACGAAGACGAGGACTACGATAACTACTGTTGAGC
GAAAAGCCGTCACAGAGGAGGAGCGGTTCGATTTTTTGCAACCAATTCTC
GAGCCGCCGCAAGATAGCGACTCCCTCGGCGCCGTCGGCGCCGCGGGAGC
CAAGGGGAAGCGAAAAAGCGGCCCCACTTCCGGCCGAGCGGGAACAGGGG
GTGCGGGAGCAAGGAAGAAGGGGAAGAAGCGGATGGGCAGCACGGAGTTT
GCAGGCGTAGGCGCGGCAGGAAGTGGGGCGACGAGTGCGCCAGGTATCAA
ACCGTCAGGAAGCGCGACGACCTCAGTCGCCGGGGCGGGGAGTGGTGGTT
TGTTGGCGTTAGCGGGGCTTGATGAGGAGGGACGACGGCGGGCTTTATTG
GGAGTGCTGGACACCAAACCTCCGGCGGCGTCCGGGCTAGGAGACGACGA
AGACGAGGACTACGATAACTACTGTTGA
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