mRNA_L-elsbetiae_contig15015.3608.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15015.3608.1
Unique NamemRNA_L-elsbetiae_contig15015.3608.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Match: A0A6H5JVM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVM0_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 8.860e-28
Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = 1 
Query:    1 ESGTRWWTKQGEKEMFLRLIPKHNAASLSSTDDKNRTWWRLATELKEKTAMTIRVKEKVRGGQGTKIVTKKVTVDMAPKMEGMSKDAIIDKFKTIFGDCRTKWNKRQEEKKRKTGEGSD 357
            E+G RWWT+QGE+E+  RLIPKH A+  S+T  K+  WW+ A  L +K  MT+RVKE  + G   ++VTKKVTVDM  KME      I++K  +IF   +T WNKRQE+KK  TGEG D
Sbjct:  161 ETGPRWWTQQGERELLWRLIPKHLASKHSATKAKDEEWWKCAQALSKKVEMTMRVKEVQKDGN-VELVTKKVTVDMGRKME-----VIVEKLSSIFSAHQTAWNKRQEKKKSLTGEGDD 273
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BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Match: A0A6H5K5G7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5G7_9PHAE)

HSP 1 Score: 114 bits (285), Expect = 2.720e-27
Identity = 60/119 (50.42%), Postives = 81/119 (68.07%), Query Frame = 1 
Query:    1 ESGTRWWTKQGEKEMFLRLIPKHNAASLSSTDDKNRTWWRLATELKEKTAMTIRVKEKVRGGQGTKIVTKKVTVDMAPKMEGMSKDAIIDKFKTIFGDCRTKWNKRQEEKKRKTGEGSD 357
            E   RWWT+ GEKE F RLIPKH A+  +STDDKNR WW +A  L E T++TI V+ K R  + +K+V K V ++M PKME    D +  K KTI+   R++W+K+ ++KK+ TGEGSD
Sbjct:  216 EKSPRWWTQPGEKEYFYRLIPKHCASKHTSTDDKNREWWSVAEGLMEATSITIVVRLKTREDKSSKLVRKAVKLNMRPKME----DDVQGKLKTIWLADRSRWDKKHQDKKKLTGEGSD 330
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BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Match: A0A6H5JEU1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEU1_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 2.110e-21
Identity = 52/110 (47.27%), Postives = 71/110 (64.55%), Query Frame = 1 
Query:   28 QGEKEMFLRLIPKHNAASLSSTDDKNRTWWRLATELKEKTAMTIRVKEKVRGGQGTKIVTKKVTVDMAPKMEGMSKDAIIDKFKTIFGDCRTKWNKRQEEKKRKTGEGSD 357
            +GE+E+   LIPKH A+  S+  DK+  WW     L +K  MT RV+E  + G   ++V KKVTVDM  KMEG+S++ I+++ +TIF   RT W KRQEEKK  +GE  D
Sbjct:  269 KGERELLWLLIPKHLASKHSAKKDKDDEWWECPQALSKKVEMTARVEEVQKDGN-LELVAKKVTVDMGRKMEGLSREVIVEELRTIFSAHRTAWKKRQEEKKSFSGESDD 377
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BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Match: A0A6H5JWC6_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWC6_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 9.540e-19
Identity = 49/119 (41.18%), Postives = 68/119 (57.14%), Query Frame = 1 
Query:    1 ESGTRWWTKQGEKEMFLRLIPKHNAASLSSTDDKNRTWWRLATELKEKTAMTIRVKEKVRGGQGTKIVTKKVTVDMAPKMEGMSKDAIIDKFKTIFGDCRTKWNKRQEEKKRKTGEGSD 357
            E+G RWWT+QGE+E+  RLIPKH A+  S+   K+  WW+ A  L +K  MT   +   +G Q                  G+S++ I++K ++IF   RT WNKRQE+KK  TGEG D
Sbjct:  192 ETGPRWWTQQGERELLWRLIPKHLASKHSAKKAKDEEWWKCAQALSKKVEMTNTGQGSAKGRQPGTRHEGHSRHGEEDGDSGLSREVIVEKLRSIFSAHRTAWNKRQEKKKSLTGEGDD 310
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BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Match: A0A6H5K576_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K576_9PHAE)

HSP 1 Score: 47.8 bits (112), Expect = 5.030e-5
Identity = 21/39 (53.85%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:  241 EGMSKDAIIDKFKTIFGDCRTKWNKRQEEKKRKTGEGSD 357
            +G+S++ I++K ++IF   RT WNKRQE+KK  TGEG D
Sbjct:    3 QGLSREVIVEKLRSIFSAHRTAWNKRQEKKKSLTGEGDD 41
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15015.3608.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JVM0_9PHAE8.860e-2852.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K5G7_9PHAE2.720e-2750.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JEU1_9PHAE2.110e-2147.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JWC6_9PHAE9.540e-1941.18Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K576_9PHAE5.030e-553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15015contigL-elsbetiae_contig15015:593..2766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size357
Cds size357
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.9954445-CDS-L-elsbetiae_contig15015:592..8351622815608.9954445-CDS-L-elsbetiae_contig15015:592..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15015 593..835 +
1691682988.9989653-CDS-L-elsbetiae_contig15015:592..8351691682988.9989653-CDS-L-elsbetiae_contig15015:592..835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15015 593..835 +
1622815609.0120833-CDS-L-elsbetiae_contig15015:2652..27661622815609.0120833-CDS-L-elsbetiae_contig15015:2652..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15015 2653..2766 +
1691682989.012663-CDS-L-elsbetiae_contig15015:2652..27661691682989.012663-CDS-L-elsbetiae_contig15015:2652..2766Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15015 2653..2766 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15015.3608.1prot_L-elsbetiae_contig15015.3608.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15015 593..2766 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15015.3608.1

>prot_L-elsbetiae_contig15015.3608.1 ID=prot_L-elsbetiae_contig15015.3608.1|Name=mRNA_L-elsbetiae_contig15015.3608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=119bp
ESGTRWWTKQGEKEMFLRLIPKHNAASLSSTDDKNRTWWRLATELKEKTA
MTIRVKEKVRGGQGTKIVTKKVTVDMAPKMEGMSKDAIIDKFKTIFGDCR
TKWNKRQEEKKRKTGEGSD
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mRNA from alignment at L-elsbetiae_contig15015:593..2766+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15015.3608.1 ID=mRNA_L-elsbetiae_contig15015.3608.1|Name=mRNA_L-elsbetiae_contig15015.3608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2174bp|location=Sequence derived from alignment at L-elsbetiae_contig15015:593..2766+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTCAGGCACCCGTTGGTGGACAAAACAGGGCGAGAAGGAGATGTTCCT
CCGACTCATTCCGAAGCATAATGCGGCTTCGCTCTCCAGCACCGACGACA
AGAACCGCACGTGGTGGCGACTTGCTACGGAGCTGAAGGAGAAGACCGCT
ATGACGATACGGGTGAAGGAGAAGGTTCGCGGCGGGCAGGGCACCAAGAT
CGTGACGAAGAAGGTCACCGTCGACATGGCGCCCAAAATGGAGGTGAGGA
CATACCCTCGCTTTGTTCTTGCAATCCTGGTATTCCGTCTGGTTAAATTT
TCCCACGATTGCCTAGAATCACTCCCGAATTTATATTGAGTGACTGACGT
ACCCCCTGGTAGCATACCTTATATCGTAAGAAAGCTCTGTTCCAGGCGGA
TATTTTGATCGGAGCAGACTTCCTTTTTTTGTTTTCGGCTGGCGAGAAAA
TCGCGATCCCGTCAAGATTTTGCCAGGTTTTCTTATTTGGGCGAGCGTGA
GGTCCAATTGTCTTTTGAAGACCGGTTTTGAGCGTATCACGTCGAGGGCT
ACGCGGCGACCCAACTCAACTATTTTTTCGCGCACATGCAACGGAGAAAT
GGGCAAAAAAACTAACTTCAGGTGGTCTTTTTGATATGTTTTAAGGCGAG
AAACGCACCGATAGATTTCGAAAAACTCGACGGATTCGGGCGAATTGGAC
CTGCAACTATTTTTTTTTTTTTTTTTCCGCAAAACAAATCTCTGGAAGAG
ATATGGCCCGTCAGAGTTTTCGCGTCGATATCGAGAAACTTGAGGTCTCT
ATTAGCGCATCCTCACGCATTTTTTTTTCAATAATGTTGTGTTACCATCT
TTTTGCGCTCGTTACAGGGAGTTAGTTCAAAACACTCACTTTTTTTTTAG
TTCGTGTGCGTTCGCTCAAAAAGTGTGACACAAAATCTATTCTGTATCGT
TCCAATTTCTGCAATTTTCCGGGTTCACTTGATCTAAGTATGGTAACACC
GGTTTTTTGGGAGCAGAAAGTTTATTTTGAGAAAAGTTGCTTTTTTTCGT
CGAGACGCAAGAGAGGCAACATTTTGACAACTTTTTGCCAGAAAAGCATT
TTCGGGCAAAAAGTTTGCAAACTTTTGCACGTTCAGGCTATTTTGTTGCA
ACGTTGGCACAATGTTGCGATATGTTGCTCCTAGACAAAAATCAAACGCG
AAGTCTGCCAGAATGTGCAGGAGATCTAGAAACCTCTAGAAGAGAGCTTC
AAATGTTCTCGAGGTGCGCAGGCACGATTCCGAGCTCTTGACGATGAAAA
GTGCCCAACAATGCGGCAAAAGCAACTTTTCTCGAAATAAACTTTCTGCC
CCCAGAAAAACCGAACTAAGCGGCCAAATTTTTCGATTTCCAAAATGTCG
ATAAAATCTATTTGGCCTTGCGTACACGATCACAACGCATTACTTTTGTT
TGATACCTCTCAATATTGAGCGAGAAAAAGTGGGGGTCGCGTTGTGGGAA
AATTTAACCGGATGGCCCCTAGCGTATGGCGAGGAAGATGGGGGGGGAAA
GCCTCGTCAGCCGAAAGATATGGGCTCTGACCATGACACCAGTGACGAAG
ACTGTGGGTGCAATTGAAGGCAATGTCGCTCCAGTCCAAGCACCCGGAGG
AGGGGTGGTAAGAATCTTGTTAGCCACAACTCCGAGTATAAAATGACTGA
AGGCGAATGCCTGCCACACCCCCCCCCCCGTAACCCAAGTTACATTAGTG
TCACAAACGCACCGAGCAGACAAACACCACTCGTAATGCTTGTACTTCTT
GCCGCTACGACCCTCGACAGGATTGGCTGTAGATGAGAGGGATTTCCGTC
TACCATGGTACAACCTTTAGCCGCTTCGCTCCCCCCCACGTAACACCGCA
ACTCCACGGCACTGTGCCGTTTCGCCGATGCAGCACCCTAACACGTTCCA
GATGGGGTTCGGAATGGTAGGTAGGCCGCGACAAATATTATTACAAGGTG
TCTAGGTCGTGCGTGTAACCCACCCCCGCTTTAATTCGGCCGTGTGTGCG
GGTGGTGCACGGAATGTCGAAGGACGCAATCATCGACAAGTTCAAGACCA
TATTCGGCGACTGCAGGACGAAGTGGAACAAGAGGCAGGAGGAAAAGAAG
CGCAAGACAGGAGAGGGCAGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15015:593..2766+

>mRNA_L-elsbetiae_contig15015.3608.1 ID=mRNA_L-elsbetiae_contig15015.3608.1|Name=mRNA_L-elsbetiae_contig15015.3608.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=714bp|location=Sequence derived from alignment at L-elsbetiae_contig15015:593..2766+ (Laminarionema elsbetiae ELsaHSoW15)
GAGTCAGGCACCCGTTGGTGGACAAAACAGGGCGAGAAGGAGATGTTCCT
CCGACTCATTCCGAAGCATAATGCGGCTTCGCTCTCCAGCACCGACGACA
AGAACCGCACGTGGTGGCGACTTGCTACGGAGCTGAAGGAGAAGACCGCT
ATGACGATACGGGTGAAGGAGAAGGTTCGCGGCGGGCAGGGCACCAAGAT
CGTGACGAAGAAGGTCACCGTCGACATGGCGCCCAAAATGGAGGAGTCAG
GCACCCGTTGGTGGACAAAACAGGGCGAGAAGGAGATGTTCCTCCGACTC
ATTCCGAAGCATAATGCGGCTTCGCTCTCCAGCACCGACGACAAGAACCG
CACGTGGTGGCGACTTGCTACGGAGCTGAAGGAGAAGACCGCTATGACGA
TACGGGTGAAGGAGAAGGTTCGCGGCGGGCAGGGCACCAAGATCGTGACG
AAGAAGGTCACCGTCGACATGGCGCCCAAAATGGAGGGAATGTCGAAGGA
CGCAATCATCGACAAGTTCAAGACCATATTCGGCGACTGCAGGACGAAGT
GGAACAAGAGGCAGGAGGAAAAGAAGCGCAAGACAGGAGAGGGCAGCGAC
GGAATGTCGAAGGACGCAATCATCGACAAGTTCAAGACCATATTCGGCGA
CTGCAGGACGAAGTGGAACAAGAGGCAGGAGGAAAAGAAGCGCAAGACAG
GAGAGGGCAGCGAC
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