mRNA_L-elsbetiae_contig15014.3607.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15014.3607.1
Unique NamemRNA_L-elsbetiae_contig15014.3607.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15014.3607.1 vs. uniprot
Match: A0A6H5JKX1_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JKX1_9PHAE)

HSP 1 Score: 206 bits (524), Expect = 1.250e-59
Identity = 111/126 (88.10%), Postives = 118/126 (93.65%), Query Frame = 2 
Query:    2 VAKEIQALEYVGRRSAEAGGRRERGREGVKFRKGRGGETQTVEVASSRAASLVDELLTVYTQEAYGLCKKAGVAMPSLVGQQDRVANGRSRYGTGPLRRYIDILAQRQMAAILRGSGYLNKEELVE 379
            VAKEIQALEYVGRRSAEA GRRERGREGVKFRKG GGETQ +EVA+SR  SLVDELLTVYTQE Y LCK+AGVAMPSLVGQQDRVA GRSRYGTGPLRRYIDILAQRQ+AAILRGSGYLNK++L+E
Sbjct:  629 VAKEIQALEYVGRRSAEASGRRERGREGVKFRKGAGGETQALEVAASRQ-SLVDELLTVYTQEVYRLCKRAGVAMPSLVGQQDRVATGRSRYGTGPLRRYIDILAQRQIAAILRGSGYLNKKDLME 753
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BLAST of mRNA_L-elsbetiae_contig15014.3607.1 vs. uniprot
Match: A0A835Z4W4_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z4W4_9STRA)

HSP 1 Score: 80.9 bits (198), Expect = 3.040e-15
Identity = 40/92 (43.48%), Postives = 58/92 (63.04%), Query Frame = 2 
Query:  104 RGGETQTVEVASSRAASLVDELLTVYTQEAYGLCKKAGVAMPSLVGQQDRVANGRSRYGTGPLRRYIDILAQRQMAAILRGSGYLNKEELVE 379
            R G  + V    + A ++VD  L ++T+ A  +C  AG AMP LVG + RV +GR+R+GT PLRRY+D+LAQRQ+ A+L     L K  + +
Sbjct:  539 RAGAVRAVTYEDTAAHAMVDAALALFTEAAARVCADAGAAMPVLVGLEGRVRSGRARFGTAPLRRYVDLLAQRQLCAVLGRRALLGKRRVAD 630
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BLAST of mRNA_L-elsbetiae_contig15014.3607.1 vs. uniprot
Match: A0A7S2DFQ6_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DFQ6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 1.030e-10
Identity = 38/86 (44.19%), Postives = 55/86 (63.95%), Query Frame = 2 
Query:  116 TQTVEVASSRAASLVDELLTVYTQEAYGLCKKAGVAMPSLVGQQDRVANGRSRYGTGPLRRYIDILAQRQMAAILRGSGYLNKEEL 373
            T+    +SSRA S+VD +L++Y++EAY LCK+ GV+ P + G       G  RY T PLRRY D+LAQRQ+ +++  S   + E L
Sbjct:  260 TKQAIASSSRAHSIVDTVLSMYSKEAYLLCKRKGVSTPRMPG-------GVVRYSTAPLRRYADLLAQRQLLSLVGASDTSDVEVL 338
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BLAST of mRNA_L-elsbetiae_contig15014.3607.1 vs. uniprot
Match: A0A4D9CV05_9STRA (RNB domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CV05_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 5.480e-8
Identity = 34/91 (37.36%), Postives = 53/91 (58.24%), Query Frame = 2 
Query:  110 GETQTVEVASSRAASLVDELLTVYTQEAYGLCKKAGVAMPSLVGQQDRVANG--RSRYGTGPLRRYIDILAQRQMAAILRGSGYLNKEELV 376
            GE + +    + A  +VDE L +Y++      K   V +P   G    V+ G   +R+GTGPLRRY D+LAQ+QM ++L+G   L+K E++
Sbjct:  625 GELEAIGFQRTPAHLMVDEFLALYSEAGRRFLKAHAVTLPLAPGS---VSGGLDAARFGTGPLRRYTDVLAQQQMVSVLKGRPPLSKSEVI 712
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15014.3607.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A6H5JKX1_9PHAE1.250e-5988.10RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A835Z4W4_9STRA3.040e-1543.48RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2DFQ6_9STRA1.030e-1044.19Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A4D9CV05_9STRA5.480e-837.36RNB domain-containing protein n=2 Tax=Monodopsidac... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15014contigL-elsbetiae_contig15014:514..1864 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size384
Cds size381
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15014.3607.1prot_L-elsbetiae_contig15014.3607.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15014 516..1864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.928756-CDS-L-elsbetiae_contig15014:515..6231622815608.928756-CDS-L-elsbetiae_contig15014:515..623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 516..623 -
1691682988.9698534-CDS-L-elsbetiae_contig15014:515..6231691682988.9698534-CDS-L-elsbetiae_contig15014:515..623Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 516..623 -
1622815608.9436984-CDS-L-elsbetiae_contig15014:1010..11391622815608.9436984-CDS-L-elsbetiae_contig15014:1010..1139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 1011..1139 -
1691682988.9794822-CDS-L-elsbetiae_contig15014:1010..11391691682988.9794822-CDS-L-elsbetiae_contig15014:1010..1139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 1011..1139 -
1622815608.9560714-CDS-L-elsbetiae_contig15014:1720..18641622815608.9560714-CDS-L-elsbetiae_contig15014:1720..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 1721..1864 -
1691682988.9877987-CDS-L-elsbetiae_contig15014:1720..18641691682988.9877987-CDS-L-elsbetiae_contig15014:1720..1864Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15014 1721..1864 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15014.3607.1

>prot_L-elsbetiae_contig15014.3607.1 ID=prot_L-elsbetiae_contig15014.3607.1|Name=mRNA_L-elsbetiae_contig15014.3607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=127bp
GRQGDPGARVRGAAQRRGRRPAGAGQGRGQVPEGPRGGDADGGGGLVQGG
KPCGRAADSVHAGGLRAVQEGRRGDALARGAAGPGRKRALKVRHWTVAAV
HRHPGAAANGCHPQRVGLPQQGGTCRD
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mRNA from alignment at L-elsbetiae_contig15014:514..1864-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15014.3607.1 ID=mRNA_L-elsbetiae_contig15014.3607.1|Name=mRNA_L-elsbetiae_contig15014.3607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1351bp|location=Sequence derived from alignment at L-elsbetiae_contig15014:514..1864- (Laminarionema elsbetiae ELsaHSoW15)
GGTCGCCAAGGAGATCCAGGCGCTCGAGTACGTGGGGCGGCGCAGCGCCG
AGGCCGGCGGCCGGCGGGAGCGGGGCAGGGAAGGGGTCAAGTTCCGGAAG
GGCCGCGGGGGGGAGACGCAGACGGTGGAGGTGGCCTCGTCCAGGCGAGC
TCCTGTTTTTTTGCTCTTGCGTCGCGTGTGTGTTTTATGTGCCGGTAGTG
GTGGTGCGTGGGCGGAGTGGGGTGGACGCGTGAAAAGGGTTAATGTCCGT
GGTTTCGGGGGGGGGCGTGGCGTGGGTCTGTCTTGTGCCCGGCAGGGTTT
CTGCTGGAGACTGGGTTGGTGTGGGCGCGGGCCGGGCCCGCGCGGAAACT
GAGGCGTGGGTCTACGGCGGTGGCGGGCGGTGGCATCGATTGGTGCTCCC
GGAGCGCCTCCTCCGGCCGCGTCTGTTCTGTCTTGTCGCGCCTTTGTGCA
GGGCACGAGAGCCTCCCAGAAGATCCGCCTCCTGCTGCCGGATTACCCGT
CTCGATATACTTCTACCCGTCCATAATCCAACTAACGGTTGTATTTCCTG
GTTTGCTGCCGTGGGGCGTTGTCTCTCCTCTTGCCGATCTCCATCTCTGC
CCGCTGCCCTCTGCTACATACATAAGGTCTGACTTTCCGCGCCATGTGGC
TCTGGCCTGCCTCCCTTGTCTTTGCCTTGTGCCTGCCTGCTCGCGCCCTA
TCCCCTGCCTTTTGCCGTGGTTCAGGGCGGCAAGCCTTGTGGACGAGCTG
CTGACAGTGTACACGCAGGAGGCCTACGGGCTGTGCAAGAAGGCCGGCGT
GGCGATGCCCTCGCTCGTGGGGCAGCAGGACCGGGTCGCAAACGGGCGCT
CAAGGTGCGGTGGGCGTTGTGTCTGTCTGTTGTTGTTGTTGTTGTTGCTG
TGGCTGTTGCTGTGGCTGTTGCTGTTGCTGTTGCTGTGGTTGCATTTATG
CTACGCGGTAGTGTTAGAAAGCTGAGAGTTAAATCGCTTGACACAAGATT
GGTCTGCTGCTCATTTCCCCCCTCTCGTTGATTCAGAGATGATACATACC
TCCCGCCCCGCCCTTTTGTTTTCGTCTTGAACTATCGACGGCAAAGCACT
CCCTTGAGCGGATGGTCTCGTGTTGGGAGGGAGTAAACCGACTGTGCGTG
TTTTTCTTTCTTCGCCTCCTTTTCCTCTCTTGCCGGTGTTGGCAACCCCT
GTATGGGTTTTCGCTCTTATCCGTGGCCAACGTAAATGTAGGTACGGCAC
TGGACCGTTGCGGCGGTACATCGACATCCTGGCGCAGCGGCAAATGGCTG
CCATCCTCAGAGGGTCGGGCTACCTCAACAAGGAGGAACTTGTAGAGACG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15014:514..1864-

>mRNA_L-elsbetiae_contig15014.3607.1 ID=mRNA_L-elsbetiae_contig15014.3607.1|Name=mRNA_L-elsbetiae_contig15014.3607.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=762bp|location=Sequence derived from alignment at L-elsbetiae_contig15014:514..1864- (Laminarionema elsbetiae ELsaHSoW15)
GGTCGCCAAGGAGATCCAGGCGCTCGAGTACGTGGGGCGGCGCAGCGCCG
AGGCCGGCGGCCGGCGGGAGCGGGGCAGGGAAGGGGTCAAGTTCCGGAAG
GGCCGCGGGGGGGAGACGCAGACGGTGGAGGTGGCCTCGTCCAGGGTCGC
CAAGGAGATCCAGGCGCTCGAGTACGTGGGGCGGCGCAGCGCCGAGGCCG
GCGGCCGGCGGGAGCGGGGCAGGGAAGGGGTCAAGTTCCGGAAGGGCCGC
GGGGGGGAGACGCAGACGGTGGAGGTGGCCTCGTCCAGGGCGGCAAGCCT
TGTGGACGAGCTGCTGACAGTGTACACGCAGGAGGCCTACGGGCTGTGCA
AGAAGGCCGGCGTGGCGATGCCCTCGCTCGTGGGGCAGCAGGACCGGGTC
GCAAACGGGCGCTCAAGGGCGGCAAGCCTTGTGGACGAGCTGCTGACAGT
GTACACGCAGGAGGCCTACGGGCTGTGCAAGAAGGCCGGCGTGGCGATGC
CCTCGCTCGTGGGGCAGCAGGACCGGGTCGCAAACGGGCGCTCAAGGTAC
GGCACTGGACCGTTGCGGCGGTACATCGACATCCTGGCGCAGCGGCAAAT
GGCTGCCATCCTCAGAGGGTCGGGCTACCTCAACAAGGAGGAACTTGTAG
AGACGTACGGCACTGGACCGTTGCGGCGGTACATCGACATCCTGGCGCAG
CGGCAAATGGCTGCCATCCTCAGAGGGTCGGGCTACCTCAACAAGGAGGA
ACTTGTAGAGAC
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