|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 1353 |
| Cds size | 1338 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815608.8447776-CDS-L-elsbetiae_contig15012:2497..2578 | 1622815608.8447776-CDS-L-elsbetiae_contig15012:2497..2578 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 2498..2578 - |
| 1691682988.9180505-CDS-L-elsbetiae_contig15012:2497..2578 | 1691682988.9180505-CDS-L-elsbetiae_contig15012:2497..2578 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 2498..2578 - |
| 1622815608.8606095-CDS-L-elsbetiae_contig15012:2828..3812 | 1622815608.8606095-CDS-L-elsbetiae_contig15012:2828..3812 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 2829..3812 - |
| 1691682988.9363155-CDS-L-elsbetiae_contig15012:2828..3812 | 1691682988.9363155-CDS-L-elsbetiae_contig15012:2828..3812 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 2829..3812 - |
| 1622815608.8740826-CDS-L-elsbetiae_contig15012:3953..4226 | 1622815608.8740826-CDS-L-elsbetiae_contig15012:3953..4226 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 3954..4226 - |
| 1691682988.9479878-CDS-L-elsbetiae_contig15012:3953..4226 | 1691682988.9479878-CDS-L-elsbetiae_contig15012:3953..4226 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig15012 3954..4226 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815608.8858857-UTR-L-elsbetiae_contig15012:4226..4239 | 1622815608.8858857-UTR-L-elsbetiae_contig15012:4226..4239 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15012 4227..4239 - |
| 1691682988.9577198-UTR-L-elsbetiae_contig15012:4226..4239 | 1691682988.9577198-UTR-L-elsbetiae_contig15012:4226..4239 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig15012 4227..4239 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig15012.3606.1 >prot_L-elsbetiae_contig15012.3606.1 ID=prot_L-elsbetiae_contig15012.3606.1|Name=mRNA_L-elsbetiae_contig15012.3606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=446bp
MALLQLRFESYPEQHASSMSGMEVVTSPTSTAIVCRPTRGYDVRHARRPT
EVELLASAMVDSFVLRAVQQCIITDIIRHRPTRWQLQTTSQVWSASHVGM
LAPAMRNAGYPDFAIELFRLCIESFRFEPNPKFVTDLMALLQLRFESYPE
QHASSMSGMEVVTSPTSTAIVCRPTRGYDVRHARRPTEVELLTSVMADEP
AARDIENVTASLARESAAPASGGQVETTASLTQGFKIPAPPTASVVDCVK
YDTSCSGRFPSTFASVGRAGLEILPKYHAVFSVGQLSATGISVRAADDRT
KALLRFSEASSGPDQRASPSFLGSKRASGVSGVALPSPGSSSPSAFRGSG
AQASWAPRHSSARDRSGGRGEAGAVRGSASMEAGRAYFSGKGMLNSDKGM
ERPAALTARSALSKNVDDKDATEASALRARWAAGAGISKEINGSPL back to topmRNA from alignment at L-elsbetiae_contig15012:2498..4239- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig15012.3606.1 ID=mRNA_L-elsbetiae_contig15012.3606.1|Name=mRNA_L-elsbetiae_contig15012.3606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1742bp|location=Sequence derived from alignment at L-elsbetiae_contig15012:2498..4239- (Laminarionema elsbetiae ELsaHSoW15)
CGTTACTGATCTTATGGCCCTCTTGCAGCTGCGGTTCGAGTCGTACCCGG
AGCAACACGCCTCGAGCATGAGCGGCATGGAAGTGGTGACAAGCCCGACG
TCGACGGCGATCGTGTGCCGCCCAACAAGGGGGTATGACGTGCGCCATGC
GCGCAGGCCCACGGAGGTCGAGCTGCTCGCGAGTGCCATGGTCGACTCCT
TCGTCCTACGGGCTGTTCAACAATGCATCATCACCGACATTATTCGCCAT
CGCCCAACACGATGGCAGCTTCAAACGACGTCACAGGTACTTTTTTCTGC
TTGAGCACGGATCGGAAGGAGAGTTAAGGCATGTTTGGTTTGAGACAAGT
CCAGTCTACCATTAGCAGCGCAACATAGCTATCTCACGGTTGAACATATT
TTGCCCACCGCGCTGCTTTCTACTCAGGTGTGGAGCGCCAGCCACGTCGG
GATGTTGGCACCAGCAATGCGCAACGCTGGCTATCCTGATTTCGCCATCG
AGCTGTTCAGGCTATGCATCGAGTCGTTCCGCTTCGAGCCCAACCCCAAG
TTCGTTACTGATCTTATGGCCCTCTTGCAGCTGCGGTTCGAGTCGTACCC
GGAGCAACACGCCTCGAGCATGAGCGGCATGGAAGTGGTGACAAGCCCGA
CGTCGACGGCGATCGTGTGCCGCCCAACAAGGGGGTATGACGTGCGCCAT
GCGCGCAGGCCCACGGAGGTCGAGCTGCTCACGAGTGTGATGGCCGACGA
ACCCGCTGCGAGAGACATCGAGAACGTGACAGCTTCGCTTGCGAGAGAAT
CGGCCGCTCCGGCCTCGGGTGGGCAGGTCGAAACTACCGCATCTCTCACC
CAGGGGTTTAAGATACCAGCCCCCCCTACTGCGTCGGTGGTGGATTGTGT
GAAATACGACACCTCCTGCTCTGGGCGGTTTCCCTCAACCTTTGCGTCGG
TAGGACGCGCCGGGCTTGAGATTCTGCCTAAATACCACGCGGTGTTTTCT
GTCGGCCAGCTATCGGCCACGGGTATCTCTGTCCGAGCCGCAGACGACCG
AACCAAGGCGCTGCTACGGTTCTCTGAGGCGTCTTCGGGCCCTGACCAGC
GAGCTTCGCCATCCTTCCTCGGCAGCAAACGCGCCAGCGGCGTCAGCGGT
GTAGCTCTACCTTCCCCCGGGTCATCATCACCCTCCGCGTTTCGGGGAAG
TGGTGCCCAAGCGTCTTGGGCACCAAGGCACTCCAGTGCCCGCGACCGAA
GTGGGGGCCGCGGCGAGGCTGGTGCGGTAAGAGGTTCAGCATCGATGGAG
GCAGGTAGAGCATATTTTTCAGGCAAGGGCATGTTGAACTCTGACAAAGG
AATGGAACGCCCCGCCGCTCTCACCGCGAGATCGGCACTGTCGAAGAATG
TCGACGACAAGGTGATTCTACCGGAGTTGCGTAGACGCGCAAACGTTATT
TTTCCAAACGGTTGATACCTATGCTCACCTGCCCGAGGGACATGAACGCG
GATCATGGTGAAATAGTTGAGTTATTTTGTTTTACTTTTTCCAATCCGCC
ATACCTCCCGACTGCCCGAACCTTGTCCTTTCTGATGCGTGCTACCGGTG
TCTCTTTACACAAAATCGCGCCTTCGTGTTGTTTTCTTGCATGGTTCCGT
CGCCTGTTCAGGACGCCACGGAAGCATCAGCCCTTCGAGCCAGGTGGGCC
GCCGGCGCTGGCATATCGAAGGAAATCAACGGGTCCCCGTTG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig15012:2498..4239- >mRNA_L-elsbetiae_contig15012.3606.1 ID=mRNA_L-elsbetiae_contig15012.3606.1|Name=mRNA_L-elsbetiae_contig15012.3606.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2676bp|location=Sequence derived from alignment at L-elsbetiae_contig15012:2498..4239- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCCTCTTGCAGCTGCGGTTCGAGTCGTACCCGGAGCAACACGCCTC
GAGCATGAGCGGCATGGAAGTGGTGACAAGCCCGACGTCGACGGCGATCG
TGTGCCGCCCAACAAGGGGGTATGACGTGCGCCATGCGCGCAGGCCCACG
GAGGTCGAGCTGCTCGCGAGTGCCATGGTCGACTCCTTCGTCCTACGGGC
TGTTCAACAATGCATCATCACCGACATTATTCGCCATCGCCCAACACGAT
GGCAGCTTCAAACGACGTCACAGATGGCCCTCTTGCAGCTGCGGTTCGAG
TCGTACCCGGAGCAACACGCCTCGAGCATGAGCGGCATGGAAGTGGTGAC
AAGCCCGACGTCGACGGCGATCGTGTGCCGCCCAACAAGGGGGTATGACG
TGCGCCATGCGCGCAGGCCCACGGAGGTCGAGCTGCTCGCGAGTGCCATG
GTCGACTCCTTCGTCCTACGGGCTGTTCAACAATGCATCATCACCGACAT
TATTCGCCATCGCCCAACACGATGGCAGCTTCAAACGACGTCACAGGTGT
GGAGCGCCAGCCACGTCGGGATGTTGGCACCAGCAATGCGCAACGCTGGC
TATCCTGATTTCGCCATCGAGCTGTTCAGGCTATGCATCGAGTCGTTCCG
CTTCGAGCCCAACCCCAAGTTCGTTACTGATCTTATGGCCCTCTTGCAGC
TGCGGTTCGAGTCGTACCCGGAGCAACACGCCTCGAGCATGAGCGGCATG
GAAGTGGTGACAAGCCCGACGTCGACGGCGATCGTGTGCCGCCCAACAAG
GGGGTATGACGTGCGCCATGCGCGCAGGCCCACGGAGGTCGAGCTGCTCA
CGAGTGTGATGGCCGACGAACCCGCTGCGAGAGACATCGAGAACGTGACA
GCTTCGCTTGCGAGAGAATCGGCCGCTCCGGCCTCGGGTGGGCAGGTCGA
AACTACCGCATCTCTCACCCAGGGGTTTAAGATACCAGCCCCCCCTACTG
CGTCGGTGGTGGATTGTGTGAAATACGACACCTCCTGCTCTGGGCGGTTT
CCCTCAACCTTTGCGTCGGTAGGACGCGCCGGGCTTGAGATTCTGCCTAA
ATACCACGCGGTGTTTTCTGTCGGCCAGCTATCGGCCACGGGTATCTCTG
TCCGAGCCGCAGACGACCGAACCAAGGCGCTGCTACGGTTCTCTGAGGCG
TCTTCGGGCCCTGACCAGCGAGCTTCGCCATCCTTCCTCGGCAGCAAACG
CGCCAGCGGCGTCAGCGGTGTAGCTCTACCTTCCCCCGGGTCATCATCAC
CCTCCGCGTTTCGGGGAAGTGGTGCCCAAGCGTCTTGGGCACCAAGGCAC
TCCAGTGCCCGCGACCGAAGTGGGGGCCGCGGCGAGGCTGGTGCGGTAAG
AGGTTCAGCATCGATGGAGGCAGGTAGAGCATATTTTTCAGGCAAGGGCA
TGTTGAACTCTGACAAAGGAATGGAACGCCCCGCCGCTCTCACCGCGAGA
TCGGCACTGTCGAAGAATGTCGACGACAAGGTGTGGAGCGCCAGCCACGT
CGGGATGTTGGCACCAGCAATGCGCAACGCTGGCTATCCTGATTTCGCCA
TCGAGCTGTTCAGGCTATGCATCGAGTCGTTCCGCTTCGAGCCCAACCCC
AAGTTCGTTACTGATCTTATGGCCCTCTTGCAGCTGCGGTTCGAGTCGTA
CCCGGAGCAACACGCCTCGAGCATGAGCGGCATGGAAGTGGTGACAAGCC
CGACGTCGACGGCGATCGTGTGCCGCCCAACAAGGGGGTATGACGTGCGC
CATGCGCGCAGGCCCACGGAGGTCGAGCTGCTCACGAGTGTGATGGCCGA
CGAACCCGCTGCGAGAGACATCGAGAACGTGACAGCTTCGCTTGCGAGAG
AATCGGCCGCTCCGGCCTCGGGTGGGCAGGTCGAAACTACCGCATCTCTC
ACCCAGGGGTTTAAGATACCAGCCCCCCCTACTGCGTCGGTGGTGGATTG
TGTGAAATACGACACCTCCTGCTCTGGGCGGTTTCCCTCAACCTTTGCGT
CGGTAGGACGCGCCGGGCTTGAGATTCTGCCTAAATACCACGCGGTGTTT
TCTGTCGGCCAGCTATCGGCCACGGGTATCTCTGTCCGAGCCGCAGACGA
CCGAACCAAGGCGCTGCTACGGTTCTCTGAGGCGTCTTCGGGCCCTGACC
AGCGAGCTTCGCCATCCTTCCTCGGCAGCAAACGCGCCAGCGGCGTCAGC
GGTGTAGCTCTACCTTCCCCCGGGTCATCATCACCCTCCGCGTTTCGGGG
AAGTGGTGCCCAAGCGTCTTGGGCACCAAGGCACTCCAGTGCCCGCGACC
GAAGTGGGGGCCGCGGCGAGGCTGGTGCGGTAAGAGGTTCAGCATCGATG
GAGGCAGGTAGAGCATATTTTTCAGGCAAGGGCATGTTGAACTCTGACAA
AGGAATGGAACGCCCCGCCGCTCTCACCGCGAGATCGGCACTGTCGAAGA
ATGTCGACGACAAGGACGCCACGGAAGCATCAGCCCTTCGAGCCAGGTGG
GCCGCCGGCGCTGGCATATCGAAGGAAATCAACGGGTCCCCGTTGGACGC
CACGGAAGCATCAGCCCTTCGAGCCAGGTGGGCCGCCGGCGCTGGCATAT
CGAAGGAAATCAACGGGTCCCCGTTG back to top
|