mRNA_L-elsbetiae_contig15004.3604.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15004.3604.1
Unique NamemRNA_L-elsbetiae_contig15004.3604.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15004.3604.1 vs. uniprot
Match: D8LMZ6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMZ6_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 3.670e-27
Identity = 80/168 (47.62%), Postives = 92/168 (54.76%), Query Frame = 1 
Query:    1 DVLSAPTVDQVDVGSCVEVRHDGENAQTVRHRY-------NDGAAGASSSVGASAFAXXXXXXXXXXAKVAETTMTFDRVLK---GERGGYRRKLSFGP-RASHGCIYRHNHKARTPSHIANPKARRPTRARKDPILANTRWPPPVVVRACDRTEQRRAFSLEHSVLA 471
            DVL  PT DQVD+GS V V     N +   H++                 V AS              +    T+ F+  L    G RG  RR LS G  +ASH CIYRH HK RTPS +ANPKARRP +A  DPILANTRWPPPV V A +RTEQR A+SLEHS LA
Sbjct:  839 DVLRTPTEDQVDIGSSVVVGGGKGNVRKAPHKHAGXXXXXXXXXXXXXXGVPASPPRRRVRSTGDAARRAGTGTLGFEETLAPKGGRRGSVRRGLSRGDTQASHACIYRHKHKGRTPSRVANPKARRPVQAAHDPILANTRWPPPVDVPAQERTEQRSAYSLEHSFLA 1006
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BLAST of mRNA_L-elsbetiae_contig15004.3604.1 vs. uniprot
Match: A0A6H5JPQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPQ9_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 2.620e-22
Identity = 53/83 (63.86%), Postives = 59/83 (71.08%), Query Frame = 1 
Query:  223 KGERGGYRRKLSFGPRASHGCIYRHNHKARTPSHIANPKARRPTRARKDPILANTRWPPPVVVRACDRTEQRRAFSLEHSVLA 471
            +  RGG  R    G + SH CIYRH  K RTPS +ANPKARRP +A  DPILAN RWPPPV V A +RTEQR A+SLEHS LA
Sbjct:   10 RAARGGLSRG---GTQVSHACIYRHKLKGRTPSRVANPKARRPVQAAHDPILANIRWPPPVDVPAQERTEQRSAYSLEHSSLA 89
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15004.3604.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMZ6_ECTSI3.670e-2747.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JPQ9_9PHAE2.620e-2263.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15004contigL-elsbetiae_contig15004:1003..3397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-16_001210.1
Exons3
Model size1225
Cds size474
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15004.3604.1prot_L-elsbetiae_contig15004.3604.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15004 1003..2648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.7168999-CDS-L-elsbetiae_contig15004:1002..12271622815608.7168999-CDS-L-elsbetiae_contig15004:1002..1227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 1003..1227 +
1691682988.864077-CDS-L-elsbetiae_contig15004:1002..12271691682988.864077-CDS-L-elsbetiae_contig15004:1002..1227Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 1003..1227 +
1622815608.7302222-CDS-L-elsbetiae_contig15004:1476..15901622815608.7302222-CDS-L-elsbetiae_contig15004:1476..1590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 1477..1590 +
1691682988.8779707-CDS-L-elsbetiae_contig15004:1476..15901691682988.8779707-CDS-L-elsbetiae_contig15004:1476..1590Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 1477..1590 +
1622815608.7412646-CDS-L-elsbetiae_contig15004:2513..26481622815608.7412646-CDS-L-elsbetiae_contig15004:2513..2648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 2514..2648 +
1691682988.8896692-CDS-L-elsbetiae_contig15004:2513..26481691682988.8896692-CDS-L-elsbetiae_contig15004:2513..2648Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15004 2514..2648 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815608.7535906-UTR-L-elsbetiae_contig15004:2648..33971622815608.7535906-UTR-L-elsbetiae_contig15004:2648..3397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15004 2649..3397 +
1691682988.897603-UTR-L-elsbetiae_contig15004:2648..33971691682988.897603-UTR-L-elsbetiae_contig15004:2648..3397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15004 2649..3397 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15004.3604.1

>prot_L-elsbetiae_contig15004.3604.1 ID=prot_L-elsbetiae_contig15004.3604.1|Name=mRNA_L-elsbetiae_contig15004.3604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
DVLSAPTVDQVDVGSCVEVRHDGENAQTVRHRYNDGAAGASSSVGASAFA
GGTASSAAAAAKVAETTMTFDRVLKGERGGYRRKLSFGPRASHGCIYRHN
HKARTPSHIANPKARRPTRARKDPILANTRWPPPVVVRACDRTEQRRAFS
LEHSVLA*
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mRNA from alignment at L-elsbetiae_contig15004:1003..3397+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15004.3604.1 ID=mRNA_L-elsbetiae_contig15004.3604.1|Name=mRNA_L-elsbetiae_contig15004.3604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2395bp|location=Sequence derived from alignment at L-elsbetiae_contig15004:1003..3397+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTGCTCAGTGCTCCCACCGTCGACCAAGTGGACGTCGGGAGTTGCGT
GGAGGTTCGGCACGACGGAGAGAACGCGCAAACGGTCCGGCACAGGTACA
ACGACGGTGCCGCCGGTGCGTCGTCGTCGGTCGGAGCATCAGCTTTTGCT
GGGGGGACAGCGTCGAGTGCTGCCGCCGCGGCGAAAGTGGCTGAGACAAC
CATGACATTCGACAGGGTGCTCAAGGTGAGGGAGGGCACGTGAAAACTTG
CCCTACATAAGAGTATATACAAGTATGTATGTAGACAATTTCAGGGCCAT
TGATTGCCGGTAGATTCCCCCCCCCCAAAAAAAAACAGGCACATTCTGGC
ATATCCATGCGGGGTCGCGTCGGCGTGTCTTCGTTTTCTGACGTTGATGA
ACCGCAAGTTGTTGATCACACGATTTTTTCTCTCCGGTTTTGTCTTGGCT
GCCGTCTCGGTTTCGCCACTCTAGGGCGAGCGAGGGGGCTACCGGAGAAA
GCTATCGTTTGGGCCTCGGGCGTCTCATGGGTGCATCTACCGGCACAACC
ATAAGGCGAGGACACCGTCGCACATCGCCAATCCTAAGGTGAGAGGTTGC
ATCTTATTTTTATTTTTTTTCGTTTGGATACACCGAGGTATTTTCCAAAC
TCGACCGAGGGTCCGGTTATTTAGTATTTATTGTTTCTGAAAGCCGCATG
CCGTCCCCGGGATGACGCAAGATGAAAAGGCCTGCACATATGTATGTACA
AAAAAAATGAATTCTCTATACGCGGGCGGGGGGCCTTCCGGAAACAAACC
GCAAAATCTGCAGGGTCCTCCCAAACCCTTGGCACACTAATAGCCAATAC
AAAACATTACCACCCACAAGCTTCTGCACCCCGCGGGCCGAAAGGGAATA
TATAGATACTTTTGGAGGTTGCCACAGGATTTATTATTTTGAGGTGATAA
ATTAGCTGTTTTCGCTGATTCTTGGCTTTTGTTCGAAGAGGCTTTTGCGG
CTCGAAATTTGAAATTTTGAAAAATTACTCCGTGAAATATAGCCAGTCCC
GGCGACTTTAGGCGGCTAGCATACGCACCACCAATGCCTGCCGAGTCTGA
ACACGTAATGGAGAATGTACTGACGGGTCCTCTGCGTGCCATGCAGAAGG
AGGCATGAGTAAAAGTGCTGCGCCGCCAGAGAAAACCAACCAAAACAGTC
AAATTAGCGTGTAGACATATCGCTCCATGCCTTTCTGTCCTTCAAAACCA
CTCGCCCAGCCAGGGGCGGGAGGGCGAAGCCAACTGCTGACAAGATTTCA
TTAAGTTCGCGATCACACTTTATCTTCCGCAGGCTGAAGAATCACGGACG
GCTTGTCCCATCCGCGGTCTTATCATAATCAATGGACAACGTCACACAGG
TTTGACCCCCCCGCCCTTTTTTTCCCCCCCATGTGTTTTTTTCCCCCCCC
CCCCCCACCCCCCCGCTCCCTCCTTTTCGTGCGCCACTCCTATGTACTTG
TCGGAAAGCAGGCTCGCCGGCCGACAAGAGCGCGCAAAGACCCCATCCTA
GCGAATACCCGCTGGCCCCCGCCGGTCGTGGTTCGAGCCTGTGACAGGAC
CGAGCAGAGAAGGGCCTTTTCACTCGAACACTCCGTTCTAGCCTGAATAG
AAAGTATATACGAGTAGAAAGACCGATCGACCAAGTCGCCCCTTTCGGAA
TCACCTCTGCGGTGGCACCATCCCTGTCTTTTGGGGGATTTTGATGGATC
TGGCAGGAGCTTAATCAAAGGCACCCGGGGATGGGGGTTCATGCTGACCA
CCAGAAGCTTGCTACCGAAGGCGGGCAAGCAGGCCGGGATCACCATTTTT
TTTCTTGACGTTCCGCTGTGTACATGCCCCCCCCCTAGAGAAATCGATTG
TGTTCGTTTCCCGAAACAGTCTACGCATTGTTTGTTTAATTAAATACGTG
TTGAATATTGTACGGGGAAGCTGTTTTAGGGTACACGAGGTTTTGCGGCA
TTCAAGCATTTCGAGCGGTAGCAGCTAGCTGCGGCAGTGGCGCCCTGTTT
TGGTATTTACCCAGTCCATGCACCCGATTTGGTGTTTTTTGTACACAGCA
GTAAAGGTGCTATTTTACGGCCGTCGAAGCGTGGTGGCGTGCATAAGAGA
TGCCATGCGGAGACCGTGTGACCTTCTCAACGTGCACGCCGCAGATTGGA
GTACGGGCCGTGTGCCCCCTTACCCCTGCCGGCTGGAGGGGGTCGGTACC
CAGCGTTCTTCGATGTTATACATCATGGTGATATGTGGGTTGGAACGGCG
GGTTGTCGTCACCCAGGCCAATCACTACGCGTCACCTATTCGGAGAGACT
CCAACCAGTGATCCAAGACGATGCACTTCGATAAGGCAGCAATCG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15004:1003..3397+

>mRNA_L-elsbetiae_contig15004.3604.1 ID=mRNA_L-elsbetiae_contig15004.3604.1|Name=mRNA_L-elsbetiae_contig15004.3604.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig15004:1003..3397+ (Laminarionema elsbetiae ELsaHSoW15)
GATGTGCTCAGTGCTCCCACCGTCGACCAAGTGGACGTCGGGAGTTGCGT
GGAGGTTCGGCACGACGGAGAGAACGCGCAAACGGTCCGGCACAGGTACA
ACGACGGTGCCGCCGGTGCGTCGTCGTCGGTCGGAGCATCAGCTTTTGCT
GGGGGGACAGCGTCGAGTGCTGCCGCCGCGGCGAAAGTGGCTGAGACAAC
CATGACATTCGACAGGGTGCTCAAGGATGTGCTCAGTGCTCCCACCGTCG
ACCAAGTGGACGTCGGGAGTTGCGTGGAGGTTCGGCACGACGGAGAGAAC
GCGCAAACGGTCCGGCACAGGTACAACGACGGTGCCGCCGGTGCGTCGTC
GTCGGTCGGAGCATCAGCTTTTGCTGGGGGGACAGCGTCGAGTGCTGCCG
CCGCGGCGAAAGTGGCTGAGACAACCATGACATTCGACAGGGTGCTCAAG
GGCGAGCGAGGGGGCTACCGGAGAAAGCTATCGTTTGGGCCTCGGGCGTC
TCATGGGTGCATCTACCGGCACAACCATAAGGCGAGGACACCGTCGCACA
TCGCCAATCCTAAGGGCGAGCGAGGGGGCTACCGGAGAAAGCTATCGTTT
GGGCCTCGGGCGTCTCATGGGTGCATCTACCGGCACAACCATAAGGCGAG
GACACCGTCGCACATCGCCAATCCTAAGGCTCGCCGGCCGACAAGAGCGC
GCAAAGACCCCATCCTAGCGAATACCCGCTGGCCCCCGCCGGTCGTGGTT
CGAGCCTGTGACAGGACCGAGCAGAGAAGGGCCTTTTCACTCGAACACTC
CGTTCTAGCCTGAGCTCGCCGGCCGACAAGAGCGCGCAAAGACCCCATCC
TAGCGAATACCCGCTGGCCCCCGCCGGTCGTGGTTCGAGCCTGTGACAGG
ACCGAGCAGAGAAGGGCCTTTTCACTCGAACACTCCGTTCTAGCCTGA
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