mRNA_L-elsbetiae_contig1500.3603.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: A0A6H5K7P8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7P8_9PHAE) HSP 1 Score: 738 bits (1905), Expect = 1.360e-247 Identity = 574/955 (60.10%), Postives = 626/955 (65.55%), Query Frame = 1
Query: 4 EWTGERLLEMSLHGGSVASRLSKHSAIRDTSQLAVHLSNDNAMRRLLRDGVGINEVQKKYLSLCY-SARPAVRPNKDVAQGLGAGELVWNLTVCEKQETAVIASLLTMKEARGGLRSLAISADAAG-CSSVRKRAGMAKKTTRRGSVGSRGG-SRELATEKDPVGQVELFITLCKALPHLGALRSLELEGLSKAFEKSGVGAGRLARGLAGNSGLKSLSVRHVSLADAHALGALSAAVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRRPPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALLSVCLQHNATLCALVLDGNPDIGRDAERRITEELETRSVMPEAVLEEPEVVLTLASWGFSAHAGFEGNLPPP--PPADVVGSDSAVSEISQDPFDGSGXXXXXXXX-----GRRRAASHASAANTTGVRPKTPAERKEEMVREFRRWAGYTPYSKQGPVP-GTAAXXXXXXXXXXXXPSAGSGIEATM-RRPCRSRGRPSTSVLLREEGARDAPASAAGVKQAEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-RSAKRSKSSG--------PPRDRHVQGXXXXXXXADGAGEARFPQQKAPWGVGAIRSEARERAQAWANAHLVVDSRTS----RXXXXXXXXXXHAGASGCGRRKLGRGLAKSVKSGRRAXXXXXXXXXXXXXXXXXX---------------RRRPEMNPARRDREERAPLAASVLDVTWEVLDAEGYPRLTPRQRRELFPMDEAGETEEADDAERPAISLPNGAGXXXXXXXXXXRTDRVVEMLASLEKAVMDVCKDMWRLEDKVESSERLTQSGGSERLREDLVAADGVPGREGREERGISDDEEENDGLDFDGRDEVAAQVEACLREMW 2748
EW E ++ MSLHGGSV SRLSK SAIR+T+QLAVHLSND AMRRLLRDGVGINE+QKKYLSLCY S P VA LG GEL+WNLT CEKQETAVIASLL KEAR L SL ISA AG SSVRKRAG A T RRGS GSRGG SRE+A E+DPVG+ SKA G G RLARGLA N+GLKSL+VRHV L D+ LGALS A+ HPSLV LSL CGL GE SGRLV+SV+RAHAARREG+VWSSGLRRP GVVGHTAAAAP RISTAGCLA+DLS NRLGD GVHAVARGLQSD+WL+G+NLA NG+TD GAALLSVCLQHNATLCALVLDGNP++G AERRITEELETRS+MPEAVLEEPEVVLTLASWGFSAH G + +L PP P A V GS S VSEISQD F XXXXXX R RAAS ASAA T V+ KTPAERKEEMVREFRRWAGYTP S +GP P GT P A T+ RRP RGR ST+VLLR APA+ A E XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX R AKR+K SG P R+R A ++KAPWGVG + E RER QAWA+AHL D TS ASGCG K+GRRA XXXXXXXXXXXXXXXX P + R ER A S LDVTW+VLDA+GYP LTPR+R+ELFPM ETE AERP+ P A RTDRVV+MLASLEKAVMDVCKDMWRLEDKVE SER T S GSER+ E V A GRE ++GI + G+D DGR+EVAAQVEA L +MW
Sbjct: 52 EWGREGIVGMSLHGGSVFSRLSKQSAIRNTTQLAVHLSNDTAMRRLLRDGVGINEMQKKYLSLCYVSFFPTGGALASVAMSLGGGELLWNLTACEKQETAVIASLLMTKEARTELLSLVISAHEAGRSSSVRKRAGAAT-TGRRGSRGSRGGGSREMAMERDPVGE-------------------------SKA---GGGGPARLARGLARNTGLKSLAVRHVRLTDSRTLGALSTAISVHPSLVALSLRGCGLVGEASGRLVASVLRAHAARREGLVWSSGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDTGVHAVARGLQSDTWLVGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXHEFGGATRRGRAASSASAAIPTSVQAKTPAERKEEMVREFRRWAGYTPCSMRGPGPHGTGLADPSTAEATATAPPASGHEGGTVGRRP--GRGRRSTAVLLRAGSGAGAPAAEAPWGGGRREGAATSSRAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGRLAKRNKWSGGACSSGRAPEREREQASEPWKRA-------ALLREKKAPWGVGPGKGEVRERTQAWASAHLA-DRYTSVGSGSWRVRVRSRKGRVSASGCG---------SGHKAGRRAANXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXREEAPANHGESGSRAERG--APSALDVTWDVLDADGYPELTPRRRKELFPM---AETE----AERPS---PPVARQARGGGGRGGRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSERVTESSVVAGEGLGRE--VDQGI-----DGVGVD-DGREEVAAQVEAYLSKMW 938
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: D8LBL5_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL5_ECTSI) HSP 1 Score: 683 bits (1763), Expect = 1.110e-232 Identity = 454/684 (66.37%), Postives = 486/684 (71.05%), Query Frame = 1
Query: 31 MSLHGGSVASRLSKHSAIRDTSQLAVHLSNDNAMRRLLRDGVGINEVQKKYLSLCYSARPAVRPNKDVAQGLGAGELVWNLTVCEKQETAVIASLLTMKEARGGLRSLAISADAAG-CSSVRKRAGMAKKTTRRGSVGSRGG-SRELATEKDPVGQVELFITLCKALPHLGALRSLELEGLSKAFEKSGVGAG---RLARGLAGNSGLKSLSVRHVSLADAHALGALSAAVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRRPPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALLSVCLQHNATLCALVLDGNPDIGRDAERRITEELETRSVMPEAVLEEPEVVLTLASWGFSAHAGFEGNLPPP--PPADVVGSDSAVSEISQDPFDGSGXXXXXXXXGRRRAASH-----ASAANTTGVRPKTPAERKEEMVREFRRWAGYTPYSKQGP-VPGTAAXXXXXXXXXXXXPSAGSGIEATM-RRPCRSRGRPSTSVLLREEGARDAPASAAGVKQAEEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----RSAKRSK-SSGPPRDRHVQGXXXXXXXADGAGEARFPQQKAPWGVGAIRSEARERAQAWANAHL 2022
MSLHGGSV SRLSK SAIRDT+QLAVHLSNDNAMRRLLRDGVGINE+QKKYLSLCYSAR AVRPNKDVAQ LG GELVWNLT CEKQETAVIASLL KEAR L SL ISA AG SSVRKRAG A T RRGS+GSRGG SRE+A E+DPVG+VELF LCKALP L ALRSLELEGL K+FE S G G RLARGLA N+GLKSL+VRHV L D+ ALGALS AV HPSLV LSL CGL GE SGRLVSSV+RAHAARREG+VWS+GLRRP GVVGHTAAAAP RISTAGCLA+DLS NRLGDAGVHAVARGLQSD+WLLG+NLA NG+TD GAALLSVCLQHNATLCALVLDGNP++G AERRITEELETRS+MPEAVLEEPEVVLTLASWGFSAH G + +L PP P A V GS S VSEISQD F XXXXXXXX A AA T V+ KTPAERKEEMVREFRRWAGYT S + P G P A T+ RRP RGR ST+VLLR E APA+ A E XXXXXXXXXXXXXXXXX R AKR+K S G V+ G A ++KAPWG G + E RER QAWANAHL
Sbjct: 1 MSLHGGSVFSRLSKQSAIRDTTQLAVHLSNDNAMRRLLRDGVGINEMQKKYLSLCYSARSAVRPNKDVAQSLGGGELVWNLTACEKQETAVIASLLMTKEARIELLSLVISAHEAGRSSSVRKRAGAAT-TGRRGSLGSRGGGSREMAMERDPVGEVELFNALCKALPQLEALRSLELEGLRKSFEMSKAGGGGPARLARGLARNTGLKSLAVRHVRLTDSRALGALSTAVSVHPSLVALSLRGCGLVGEASGRLVSSVLRAHAARREGLVWSAGLRRPTGVVGHTAAAAPARISTAGCLAVDLSDNRLGDAGVHAVARGLQSDTWLLGVNLARNGITDHGAALLSVCLQHNATLCALVLDGNPEVGHGAERRITEELETRSMMPEAVLEEPEVVLTLASWGFSAHTGVDRDLSPPTRPAAAVAGSGSVVSEISQDSFGXXXXXXXXXXXXXXXXXXXXXXXXAIAAIPTSVQAKTPAERKEEMVREFRRWAGYTACSMRRPGSDGIGLADPSTTEATATAPPASGHEGGTVGRRP--GRGRRSTAVLLRAESGAGAPAAEAPSGGGRREGAATGSRAHARPPRARSLXXXXXXXXXXXXXXXXXTRATAGSDCSSAGGGRLAKRNKWSGGACSPGRVREREREQAPGHGKRAALLREKKAPWGAGPGKGEVRERTQAWANAHL 681
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: A0A835YYM4_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YYM4_9STRA) HSP 1 Score: 210 bits (535), Expect = 2.770e-53 Identity = 149/409 (36.43%), Postives = 211/409 (51.59%), Query Frame = 1
Query: 208 PAVRPNKDVAQGLGAGELVWNLTVCEKQETAVIASLLTMKEARGGLRSLAISADAAGCSSVRKRAGM---AKKTTRRGSVGSRGGSRELA---------TEKDPVGQVELFITLCKALPHLGALRSLELEGLSKAFEKSGV---------------------------GAGRLARGLAGNSGLKSLSVRHVSLADAHALGALSAAVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRR--PPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALLSVCLQHNATLCALVLDGNPDIGRDAERRITEELETRSVMPEAVLEEPEVVLTLASWGF----------------SAHAGFEGNLPPP 1263
P V+P+ + + LG G L WN + ++ ET V+ LL EA L +++S S RKR+ + A++++R G+ + GG A KDP G+ L L ALP AL SLEL+GL ++ + G LARGL N+ L++LSVR+VSLADA ALGAL +AV HP + L+L +C + G R+V +V+RAH+ RR+G+ WS+GLRR P G +AAP ++ AG L++D+S NRLGDAG +AR L+ D+WL+ L+LA G++D AA L CL N LC ++L+ NP + A + L R ++P A +E+ V TL SWGF H EG PPP
Sbjct: 38 PLVKPSAALLKQLGDGALHWNPSTSDRAETLVVCQLLRSPEAWHALTRISLSGGDMENYSARKRSSVLSAARRSSRGGAAATAGGVAPKAKFGAAAVAQAGKDPTGEAALLDALSAALPKTTALESLELDGLRRSLGSAXXXXXXXXXXXXXXXXXXXXXXAPPAAPRGVAALARGLRANASLRALSVRNVSLADARALGALCSAVAAHPRIAALALPNCNVRGADGARIVGAVIRAHSNRRDGLSWSAGLRRARPRGAA---TSAAPAALARAGLLSLDVSRNRLGDAGAAELARALRGDAWLVALSLAATGLSDDAAAALQECLSVNQELCLVLLEHNPRLSPAAIAALDATLHER-IVPRAAVEDAAVAATLDSWGFILGGGDAPSLADVEVGMIHVEVEGTPPPP 442
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: D8LBL6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBL6_ECTSI) HSP 1 Score: 125 bits (315), Expect = 2.620e-27 Identity = 88/136 (64.71%), Postives = 98/136 (72.06%), Query Frame = 1
Query: 2266 AASVLDVTWEVLDAEGYPRLTPRQRRELFPMDEAGETEEADDAERPAISL---PNGAGXXXXXXXXXX----RTDRVVEMLASLEKAVMDVCKDMWRLEDKVESSERLTQSGGSERLREDLVAADGVPGREGREER 2652
A S LDVTW+VLDA+GYP LTPR+R+ELFP+ ETE AERP+ + G GXXXXXXXXXX RTDRVV+MLASLEKAVMDVCKDMWRLEDKVE SER T S GSER+ E V GRE +ER
Sbjct: 3 APSALDVTWDVLDADGYPELTPRRRKELFPV---AETE----AERPSPPVGRQARGGGXXXXXXXXXXXXXXRTDRVVDMLASLEKAVMDVCKDMWRLEDKVEGSERYTASRGSERVTESSVVTGEGLGREADQER 131
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: A0A024U644_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024U644_9STRA) HSP 1 Score: 85.5 bits (210), Expect = 2.170e-13 Identity = 71/208 (34.13%), Postives = 97/208 (46.63%), Query Frame = 1
Query: 481 PVGQVELFITLCKALPHLGALRSLELEGLSKAFEKSGVGAGRLARGLAGNSGLKSLSVRHVSLADAHALGALSAAVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRRPPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALLSVCLQHNATLCALVLDGN 1104
P G +++ ++ L SL L G+ E A LA GL L+S+S +L D + L L + PSL L L HC L + S R ++ ++RA AARR+ + WS+ LR G T P R GC ++L N GDA + L +D+WL GLNL N V RG + LQ N TL L+L N
Sbjct: 96 PQGYLKIMRSISVMASKATELVSLHLAGIQIPLEV----ASDLASGLHACRALQSISFEGSNLGD-NGLDILEEQLANRPSLCHLGLAHCKLT-DTSARPLARIIRAQAARRDEVYWSTTLR------GQTV---PNRGE--GCFLLNLESNAFGDAATDILCHSLYNDNWLYGLNLNGNTVGPRGVLNFADILQTNTTLTVLLLQSN 286
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: A0A1V9YYF4_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YYF4_9STRA) HSP 1 Score: 79.3 bits (194), Expect = 2.690e-11 Identity = 54/176 (30.68%), Postives = 89/176 (50.57%), Query Frame = 1
Query: 703 AVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRRPPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALLSVCLQHNATLCALVLDGNPD----IGRDAERRITEELETRSVMPEAVLEEPEVVLTLASW 1218
A+ P L+ L+L +C L + S R +S ++R RR+ + WSS LR ++ + GC+ ++LS N+LGDA + + L +D+WL GLNL +N + RG L+ LQ N+TL L+L+ N + + +R + + E S +E P + L +W
Sbjct: 522 ALALQPHLLHLNLTNC-LLNDASARAISRILRVQCQRRDEVYWSSTLRGQ--II---------PVQGEGCMLLNLSKNKLGDATTEILCQALYNDNWLYGLNLNENDIGPRGVLNLAEALQTNSTLTVLLLEDNTNSDARVATFIQRMLIDRQERNSTSMNHPMEHPLLRSVLKAW 685
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Match: A0A024GGU1_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GGU1_9STRA) HSP 1 Score: 70.1 bits (170), Expect = 1.110e-8 Identity = 57/188 (30.32%), Postives = 91/188 (48.40%), Query Frame = 1
Query: 541 LRSLELEGLSKAFEKSGVGAGRLARGLAGNSGLKSLSVRHVSLADAHALGALSAAVGKHPSLVTLSLGHCGLAGEPSGRLVSSVVRAHAARREGMVWSSGLRRPPGVVGHTAAAAPRRISTAGCLAMDLSGNRLGDAGVHAVARGLQSDSWLLGLNLADNGVTDRGAALL-SVCLQHNATLCALVLDG 1101
LR L++ G+ K +K V L +G+A L+ + + L DA +G L+ +G+ P++ ++ C L ++ ++ + VWS LR +G PR + +DLS N GD + A+ L SD WLLGLNL +N +TDRG +++ CLQ N TL + + G
Sbjct: 141 LRCLQVRGI-KIGKKEVV---MLEKGIAKCYKLERIDLSGSRLGDA-GIGVLAPTIGRSPAVYYMNFAQCKLTDGSKNHIIK-LISLFGITNDETVWSQSLR----CIGEAKCEGPR-------ILLDLSKNHFGDKTIEAIEGALSSDHWLLGLNLCENTITDRGISIIVDRCLQVNDTLPIVSVKG 311 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1500.3603.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1500.3603.1 >prot_L-elsbetiae_contig1500.3603.1 ID=prot_L-elsbetiae_contig1500.3603.1|Name=mRNA_L-elsbetiae_contig1500.3603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=957bp MSLHGGSVASRLSKHSAIRDTSQLAVHLSNDNAMRRLLRDGVGINEVQKKback to top mRNA from alignment at L-elsbetiae_contig1500:15478..22791+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1500.3603.1 ID=mRNA_L-elsbetiae_contig1500.3603.1|Name=mRNA_L-elsbetiae_contig1500.3603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7314bp|location=Sequence derived from alignment at L-elsbetiae_contig1500:15478..22791+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1500:15478..22791+ >mRNA_L-elsbetiae_contig1500.3603.1 ID=mRNA_L-elsbetiae_contig1500.3603.1|Name=mRNA_L-elsbetiae_contig1500.3603.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5742bp|location=Sequence derived from alignment at L-elsbetiae_contig1500:15478..22791+ (Laminarionema elsbetiae ELsaHSoW15)back to top |