mRNA_L-elsbetiae_contig150.3597.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig150.3597.1
Unique NamemRNA_L-elsbetiae_contig150.3597.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: D7FPK3_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FPK3_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 9.630e-44
Identity = 71/82 (86.59%), Postives = 76/82 (92.68%), Query Frame = 1 
Query:    1 SVPGGTDFVYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            SVPGGTDFVYERDHDAF RLDD+CNWNQMSEP++PLVVSGPSGSGKSALLANWLLHYRRRL +RPKHGG  E+  IFCHAVG
Sbjct:    6 SVPGGTDFVYERDHDAFARLDDYCNWNQMSEPAAPLVVSGPSGSGKSALLANWLLHYRRRLEKRPKHGGASEKILIFCHAVG 87
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: A0A6H5KZN6_9PHAE (EF-hand domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZN6_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 7.420e-25
Identity = 47/56 (83.93%), Postives = 51/56 (91.07%), Query Frame = 1 
Query:   85 MSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVGQV 252
            MSEP++PLVVSGPSGSGKSALLANWLLHYRRRL +RPKHGG  E+  IFCHAVGQV
Sbjct:    1 MSEPAAPLVVSGPSGSGKSALLANWLLHYRRRLAKRPKHGGASEKTLIFCHAVGQV 56
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: A0A482T4C4_9ARCH (ATP-binding protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482T4C4_9ARCH)

HSP 1 Score: 69.3 bits (168), Expect = 7.220e-12
Identity = 35/78 (44.87%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:   13 GTDFVYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            G +FVY    + + RLDD+C+ + MS+   P+++ G SG+GK+ALLANWL   R +LG R +      + FIF HAVG
Sbjct:   30 GEEFVYCSSSELYSRLDDYCDDSAMSDMRPPVLIKGESGTGKTALLANWLQR-REQLGIRMRSNA---DEFIFWHAVG 103
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: A0A847L765_9BACT (Tetratricopeptide repeat protein n=1 Tax=Candidatus Riflebacteria bacterium TaxID=2053586 RepID=A0A847L765_9BACT)

HSP 1 Score: 50.8 bits (120), Expect = 2.350e-5
Identity = 24/44 (54.55%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   49 FERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRR 180
            F+RLDDF           PL+V+GP G GKSAL+ANW+ H+RRR
Sbjct:  235 FQRLDDFVEHGG----DHPLLVTGPLGRGKSALVANWVAHHRRR 274
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: UPI001425885F (uncharacterized protein LOC117111194 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI001425885F)

HSP 1 Score: 50.4 bits (119), Expect = 3.230e-5
Identity = 26/74 (35.14%), Postives = 38/74 (51.35%), Query Frame = 1 
Query:   25 VYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            +Y    D F+ +DD+ +     +   P V+ G SGSGKSAL+ANW   Y  +   +P H       F+F H +G
Sbjct: 1276 IYIGREDYFKAIDDYVS----QDTDEPFVILGRSGSGKSALIANWCTRYEEK---KPNH-------FVFMHFIG 1335
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: A0A525W3G4_9BACT (DUF4062 domain-containing protein n=1 Tax=Nitrospira sp. CG24B TaxID=1985132 RepID=A0A525W3G4_9BACT)

HSP 1 Score: 50.1 bits (118), Expect = 4.330e-5
Identity = 30/74 (40.54%), Postives = 38/74 (51.35%), Query Frame = 1 
Query:   25 VYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            VY    + FERLD       ++    PL+V G SGSGKSALLANW L Y++     PK        F+  H +G
Sbjct:  239 VYIGRQEYFERLD-----THVTGEGPPLIVLGESGSGKSALLANWFLRYQKA---HPKE-------FVLIHFIG 297
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: F0YI16_AURAN (NACHT domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YI16_AURAN)

HSP 1 Score: 49.3 bits (116), Expect = 8.240e-5
Identity = 31/78 (39.74%), Postives = 46/78 (58.97%), Query Frame = 1 
Query:   16 TDFVYERDHDA-FERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            +D++YE  ++A F+ LD      +  +   PLV++G +G GKSALLANW+    RR  R+ KH     + F+F H VG
Sbjct:   44 SDYIYESGNEAAFDALDSHAETIE-GDAKLPLVITGSTGCGKSALLANWV---NRR--RKMKH----RDEFLFQHFVG 111
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BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Match: UPI00142571D2 (uncharacterized protein LOC117111193 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI00142571D2)

HSP 1 Score: 49.3 bits (116), Expect = 8.250e-5
Identity = 27/74 (36.49%), Postives = 37/74 (50.00%), Query Frame = 1 
Query:   25 VYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALLANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVG 246
            +Y    D F+ +DD+ +     +   P V+ G SGSGKSAL+ANW   Y  +    P H       FIF H +G
Sbjct: 1244 IYIGREDYFKAIDDYGS----KDTDEPFVILGRSGSGKSALIANWCTRYEEK---NPSH-------FIFMHFIG 1303
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig150.3597.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FPK3_ECTSI9.630e-4486.59EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KZN6_9PHAE7.420e-2583.93EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A482T4C4_9ARCH7.220e-1244.87ATP-binding protein n=1 Tax=archaeon TaxID=1906665... [more]
A0A847L765_9BACT2.350e-554.55Tetratricopeptide repeat protein n=1 Tax=Candidatu... [more]
UPI001425885F3.230e-535.14uncharacterized protein LOC117111194 n=1 Tax=Annei... [more]
A0A525W3G4_9BACT4.330e-540.54DUF4062 domain-containing protein n=1 Tax=Nitrospi... [more]
F0YI16_AURAN8.240e-539.74NACHT domain-containing protein n=1 Tax=Aureococcu... [more]
UPI00142571D28.250e-536.49uncharacterized protein LOC117111193 n=1 Tax=Annei... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig150contigL-elsbetiae_contig150:27051..30095 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score160.2
Seed ortholog evalue4.2e-37
Seed eggNOG ortholog2880.D7FPK3
Hectar predicted targeting categoryother localisation
EggNOG OGs2CNRM@1,2QXQQ@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size255
Cds size255
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.819321-CDS-L-elsbetiae_contig150:27050..272211622815607.819321-CDS-L-elsbetiae_contig150:27050..27221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 27051..27221 -
1691682988.2398763-CDS-L-elsbetiae_contig150:27050..272211691682988.2398763-CDS-L-elsbetiae_contig150:27050..27221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 27051..27221 -
1622815607.8330278-CDS-L-elsbetiae_contig150:30011..300951622815607.8330278-CDS-L-elsbetiae_contig150:30011..30095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 30012..30095 -
1691682988.25088-CDS-L-elsbetiae_contig150:30011..300951691682988.25088-CDS-L-elsbetiae_contig150:30011..30095Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig150 30012..30095 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig150.3597.1prot_L-elsbetiae_contig150.3597.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig150 27051..30095 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig150.3597.1

>prot_L-elsbetiae_contig150.3597.1 ID=prot_L-elsbetiae_contig150.3597.1|Name=mRNA_L-elsbetiae_contig150.3597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
SVPGGTDFVYERDHDAFERLDDFCNWNQMSEPSSPLVVSGPSGSGKSALL
ANWLLHYRRRLGRRPKHGGPLEEPFIFCHAVGQV*
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mRNA from alignment at L-elsbetiae_contig150:27051..30095-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig150.3597.1 ID=mRNA_L-elsbetiae_contig150.3597.1|Name=mRNA_L-elsbetiae_contig150.3597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3045bp|location=Sequence derived from alignment at L-elsbetiae_contig150:27051..30095- (Laminarionema elsbetiae ELsaHSoW15)
AGCGTGCCAGGGGGGACCGACTTCGTTTACGAGCGAGACCATGACGCATT
CGAACGACTCGATGATTTTTGCAACTGGAATCAGGTTTGAACAGTGTAGT
CTAGGATACACACAGTTTGGCTAATAGGTTATATATATATATATATATTC
GTACGGATACCCACACACGTTTACCAGTGCGCAGACGAGGGTCCGAGCAA
ATTTAGAAGCAGAGCGCACCGTTCTTGGTATACTTTTTCGTTCTACCAGT
GGACTGTGTCTATCCTGAGCACAGGTACAGTGATAGCCCCCCTGCCGGTG
TAAGCAGGCTCAACAAGATAATATTGTTGCCATCTGGTGTGTCGGATTGT
ACTCGTTATTTTACTGCAATATAGCAAGCTCTCGTAGTTTCGAGACAGAC
CTTCTGTAACTTCTTCGAGACACACCTTCTAGATAGATATCGTAAATAGA
ATATCCCTGCTGCAAAATAGATACAGTCTATGTAGTCTACTAATAGAGCC
TTTACGGATGGCTGTGCTCTTGACTTGCATCTTTTTATCCTACGGTCTCC
ATTTTCAGAAAATTACTCTCGGGCTCTCAGAGACCAGGACGCTTATTCAC
TTGGTTTCAGTGTGCAGCCGTCGCTCTTCGAAATCTCAGGGCAGTTTTGT
CAAAATGTTCGCGATTTCATCGCCGGGAGGGTATTTCGATCGGTCCAAGT
TGTGCCACGGCGCTCTCCGTCCTCAGCCGGTTGCTCTCTGCGCCTCTCTT
TTGTCTCTCTGCCCCTCTTTTTTCTATGCTGGCTGTGTTGACTGCCGCTT
GGCCTCTATTTCTGGCTCTTCCCGCTTCCTTTCTCGGTGACGCAACAGGA
GATCAGAATATTTGTTCATCAAAATATTTGTCCCAAATTTACGCCATATC
ATCGCCATGAGGGGATATCAGCCGGTCAGCGTCGCGCCAATGCGCTCTCC
AGTGCCAGTCTATCACTCTCTACACTTCTCTCTGCCTCTGCTTGTATTAT
GTCTTTTTCACTGCTGCCTCTCAATGTTGTCGTGTGCTCCTGCCTGCTCT
GGCATTCTTGGTCTCTCTCTCTGTAGCAATCCATTGGTAGGAACTCAGAT
TTCTCGCTCGCAAACAAATTATCACATTGTTGTAGATACATTTTGATTTT
TCGTATATCCTTATTAACCCCTCTGGGACTAGGCTCGTCACAGGCCGCAA
GGCGAACAGTCCAGAAAACGCGGCGGGACTATGCAAAAAAAACGGGTCCG
CAGCGCAGATACGCAGGTTCTTTGTTCTCTGTTCTGAAGAGAGATTTCTG
GTTGCAGAAGTCAACCCAGCAGCAAAACAGGCACCGCTGCCGTGTCGCCG
CCCGGCAACACACTGGGGACGTCTGTTGGCACACTAGGAAGCTTCATCGG
CCCTCAAAACGTCACTGCTAGTGTTCGCTCGAAGCTTTGTTCTCCTTTGT
AGCGATGCCCCGGGCTCTGAACTCTTCTGAAAGTACTCTAAATTCAGTAT
ATACCATATAATCACAAAAAATGATCACTAAATTGGCACCGAAGTGCCCT
GCGGCAATAGCGTACTTCTGTACTTCTCGGGGGGGCGCCGGATAGAGTCC
CGCCTCTGGCGCTCGGTTACTTTGCAATAATACCCAACGGCAACAGCAAG
CAGATCGATCCACACCGGTTGTTGGTGTATGTATGACGACGGAAATCGAA
GAGGTGTTTGGCGATGTGCTGTTGTAGATATGTATTTGTGCTGTTGGTGT
GGGTGGGTATGTATGTCTTGGCATGCTGCGTCATGTGATGTGTGGGATGA
GAGCGAGAGGGCAAAACCGATTTCGCAAATAACCAATAACCCCCAACTCC
CAAATGCAACAGCCAAGCAGCAGCGGCGGCGGCAGCTGTAGCAAGCTGCC
GGAGACAAAACATAGCGTTACAACCCTGCCGCTGCTGTGCCACCCCATCT
GGGTGGCCATGAGACCTATTGGTTGTTCATGTTATCGTCCCGATGTGCCG
ACCAGCCCAGGTCCGCACAAAACCGGGCGTCTCAATGCTCATTTTTTGTA
ATCACCAAAACCCGCTTGAAGTCCCAGAAGGGTTAAGGTAAGTTATCCTG
TGACCACAGGAATTGACCGCGTCAGTGTTAGAAGGACTGACTCATGGAGG
TGTACTGTATAGAGAGTTCGGAACGGTATTTAATGTGAAGACAAAAACAA
CATTTTTCTAAGGAACTTCGGGGTCCTCTCTCTTGCTCTCTCTCCATGTG
TGTATGCGTGTCTCTTTCTCTATCTCTCTCGCCGTCTGTCTTTTCTATCT
ACACACTTGTCTTCTGTCTCTGTCTTTCTAATATCACATTTTTTCTTTAG
AATCCTGTGCAATCAATCGGAATTAAATGGTATTTAGCCACACCTGTACC
CCCCTCTTTACCTTCAGTAGAGTAAGTACTCTATTCCTCTCTTGATATCA
ATACATACATGTAGATATCCCCAGCGTCCTGCGTTATCACATCTCGTTCG
GATCCCGGCGTCCTGTGTTCCGTTTTTGGTCTCAAAATTACTGATACTGA
TTGCGTCTCCCACGCAACTCTGCCCCTCTCGGAGCTCCTCTCTACATACA
GTCCATGCTCAAAAACCATTCCACGAAACGTACACATAACCGTGCATCTT
GGGACTCGCGGTAGTTGGCGTGGCGGCGTAAGCCGCCGAAAACCTTGTAC
ATAATACAGATGAGACTTGTAGCTATTTTTTCTGTGGACGTGTATGTGCA
GCCACTCAGGTTCGCGCTCAGTTGCGTGCATAGGAAAACGATCGCTGTGC
AGTTGAACCTATGCTACACAGATGTGCACTAACATCCGGAACTGTCCTCC
CGTCACTCACTCACAATATCACAGATGTCAGAACCATCATCCCCGTTGGT
GGTATCTGGACCTTCTGGGTCAGGCAAGAGCGCTCTTCTCGCGAATTGGC
TTCTGCACTACCGGCGGCGCTTGGGACGGCGACCGAAGCATGGGGGGCCG
TTGGAAGAGCCGTTCATCTTTTGCCACGCAGTAGGGCAAGTATAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig150:27051..30095-

>mRNA_L-elsbetiae_contig150.3597.1 ID=mRNA_L-elsbetiae_contig150.3597.1|Name=mRNA_L-elsbetiae_contig150.3597.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig150:27051..30095- (Laminarionema elsbetiae ELsaHSoW15)
AGCGTGCCAGGGGGGACCGACTTCGTTTACGAGCGAGACCATGACGCATT
CGAACGACTCGATGATTTTTGCAACTGGAATCAGAGCGTGCCAGGGGGGA
CCGACTTCGTTTACGAGCGAGACCATGACGCATTCGAACGACTCGATGAT
TTTTGCAACTGGAATCAGATGTCAGAACCATCATCCCCGTTGGTGGTATC
TGGACCTTCTGGGTCAGGCAAGAGCGCTCTTCTCGCGAATTGGCTTCTGC
ACTACCGGCGGCGCTTGGGACGGCGACCGAAGCATGGGGGGCCGTTGGAA
GAGCCGTTCATCTTTTGCCACGCAGTAGGGCAAGTATAAATGTCAGAACC
ATCATCCCCGTTGGTGGTATCTGGACCTTCTGGGTCAGGCAAGAGCGCTC
TTCTCGCGAATTGGCTTCTGCACTACCGGCGGCGCTTGGGACGGCGACCG
AAGCATGGGGGGCCGTTGGAAGAGCCGTTCATCTTTTGCCACGCAGTAGG
GCAAGTATAA
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