mRNA_L-elsbetiae_contig15.3594.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig15.3594.1
Unique NamemRNA_L-elsbetiae_contig15.3594.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig15.3594.1 vs. uniprot
Match: A0A6H5JYH5_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JYH5_9PHAE)

HSP 1 Score: 191 bits (486), Expect = 9.950e-53
Identity = 215/321 (66.98%), Postives = 241/321 (75.08%), Query Frame = 2 
Query:  353 MESNRASDVLSVVVLSGVARSAEIELVCLAACNACRENGADYSLVVDTGNIDLVRSSASTQEEETPPSSGCTSASTSINNYGRSAVSSPAVPSPPSAPVTVCSRIMPHRRIHSLALRLDLPLSQLIWPEQLRVLKFGWMFDHPLDRPLPGSLINLDLGNAFNHHIEEVAWP---AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVNWAGAPNLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQELQARELPRGLRLLRLPDVYAMHDTFEPEGLPRGCKLRIDRTEMFD 1306
            MES RA+ VL VVVLSGV   AE+ELVCL+ CNACRE+  +YS+VV   N+ LV  S S +++E   SS        IN       S  AVP  P+      SR++PHRRI  LA R+DLPLSQ++WPE LR LKFGW FDHPLD PLP SLI+L LG  FNHHIE V WP   A XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     A NL   XXXXXXXXXXXXXXXXXXXXXXXXXXXXDQ+L A +LPRGLRLLR+PDV    DTFEP+ LP+ CK+RI RT++F+
Sbjct:    1 MESTRAAGVLRVVVLSGVVWPAEVELVCLSICNACRESSTNYSMVVTAKNVRLV--SPSRRQDEGGASSPLPLCGGDIN-------SDSAVPVIPAEN----SRVLPHRRISRLAFRVDLPLSQVVWPEGLRGLKFGWRFDHPLDHPLPDSLIDLHLGGTFNHHIEGVTWPPRLAVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTSATNLKILXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQQLFASQLPRGLRLLRIPDVC---DTFEPDDLPKDCKVRIYRTDIFE 305
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig15.3594.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JYH5_9PHAE9.950e-5366.98Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig15contigL-elsbetiae_contig15:84111..86806 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-05_004590.1
Exons2
Model size1723
Cds size969
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig15.3594.1prot_L-elsbetiae_contig15.3594.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig15 84513..85481 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0824199-UTR-L-elsbetiae_contig15:84110..845121622815607.0824199-UTR-L-elsbetiae_contig15:84110..84512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 84111..84512 -
1691682987.6380055-UTR-L-elsbetiae_contig15:84110..845121691682987.6380055-UTR-L-elsbetiae_contig15:84110..84512Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 84111..84512 -
1622815607.1043456-UTR-L-elsbetiae_contig15:85481..857831622815607.1043456-UTR-L-elsbetiae_contig15:85481..85783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 85482..85783 -
1691682987.6667342-UTR-L-elsbetiae_contig15:85481..857831691682987.6667342-UTR-L-elsbetiae_contig15:85481..85783Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 85482..85783 -
1622815607.114255-UTR-L-elsbetiae_contig15:86756..868061622815607.114255-UTR-L-elsbetiae_contig15:86756..86806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 86757..86806 -
1691682987.6764154-UTR-L-elsbetiae_contig15:86756..868061691682987.6764154-UTR-L-elsbetiae_contig15:86756..86806Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig15 86757..86806 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815607.0940793-CDS-L-elsbetiae_contig15:84512..854811622815607.0940793-CDS-L-elsbetiae_contig15:84512..85481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 84513..85481 -
1691682987.6537225-CDS-L-elsbetiae_contig15:84512..854811691682987.6537225-CDS-L-elsbetiae_contig15:84512..85481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig15 84513..85481 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig15.3594.1

>prot_L-elsbetiae_contig15.3594.1 ID=prot_L-elsbetiae_contig15.3594.1|Name=mRNA_L-elsbetiae_contig15.3594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=323bp
MESNRASDVLSVVVLSGVARSAEIELVCLAACNACRENGADYSLVVDTGN
IDLVRSSASTQEEETPPSSGCTSASTSINNYGRSAVSSPAVPSPPSAPVT
VCSRIMPHRRIHSLALRLDLPLSQLIWPEQLRVLKFGWMFDHPLDRPLPG
SLINLDLGNAFNHHIEEVAWPATLQSLTFGDRFNRQVELAVWPATLRRLS
FGSSFDQPIARVLWPPSLEELHLGDAFNHPVNWAGAPNLKRLEFGTAFRC
AVDGIEWPKGLRELKFGACFDQELQARELPRGLRLLRLPDVYAMHDTFEP
EGLPRGCKLRIDRTEMFDLLLY*
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mRNA from alignment at L-elsbetiae_contig15:84111..86806-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig15.3594.1 ID=mRNA_L-elsbetiae_contig15.3594.1|Name=mRNA_L-elsbetiae_contig15.3594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2696bp|location=Sequence derived from alignment at L-elsbetiae_contig15:84111..86806- (Laminarionema elsbetiae ELsaHSoW15)
GTACAGGCAGTGCTGGTGCGTGGAGTGACGGCTTTAACCAACGACAGAGA
GTGAGTGTCGGTTTATGATATTGGATAGAAGACCGAATAAATATTGCATT
CGTGCATTTGTGCGTTCGGTCAGTCTTATCTCCCTCACATCATACTCCTA
TATTGTACCCCACCGGAAGGTTCCGACAGAGAATTGACACACTGCTATTG
ATATAATAGGATCGCGGTTTTTTGGAAGATGATGATGCATTCATTTTATG
CATGCAGCAAGCTTGGTCGAACACACGGCGTTCGGTACGAATTTGTTGCC
AGAGAGTCTCTGTCTCGCTCTCTCGCTAAGTTCGATTGCTTCAAGTTTCA
AAGCACAGCTAATCAAGCGGGTGTTCTGTGATGTTTCGGCACGGACGGTA
CGCCCACACCGTGCAGTGCGTACAAAATAAAAAATGCCCGTATTTTGCGC
CGTTTTTTTCATTTGGGAATTCGTACGACCATATCCCCAGTGCATACCCG
GTAAGAAGGACATTTTTGATGGGCTTGTCCCGCCGGTAACTCACTGAAGT
GTCGGGACTGAGAGTCATCGAGTACTAAATATGCCTGGTTGTACCCGGGA
GTGACTCTTGTTCGCACCCTCTTGATAAAAACCAACATTATCCCAATTGT
CTTGCGTACAGTAGTAGTACTGAAAGCGTTTCTCAAAGCAACTGACGCTG
TTTTGAGAGAAACTCTGAGCGGAAGTTCGGTAGATATTTATGCATCGTAC
GAGAGGAGATATATACTCATACTTCGTACATGTATCTATGTGTGTTGGTA
AAACGCGGTGTGAGATTGGTGCTCTTTGGTTGTTTCTTCTGTTTTTCAAT
ATTCTACCCACCTTGCTTGGACGAACTGCTGTATCAGCCCGATGTCCTGC
TCTGGAGCCTGATCCTCTGCTGCGGTGCGTTTGGGTGATGATCTTACCCG
AAGATCTGAATATTCATATTTCACGCTCTTTTGTTCTCTCCGTGTTTCGC
TAACGTATCATCGATCTGCCCAGACAACGACACATCCCGGCGCTGGCGCT
GGTGGTTTTACTGCGCTTGACACCACGCCAGACTGCAAGCTATAGCAGCA
CGACTTTCAGCTTCGGCAATTGGCTTGGTGTGGGTACTTCGAGCAAGGAC
ACGTGCATCAGCGCTAATTACCAACTACCTTTCTGCAATATCCCTGCTGG
AGAGGCGACGGAAAGCACATACAGTAGTCTGTGCGGCGCTATTCTGGGCG
CGGATGGTCTTGCCGAGGGCTCTTGCATCCTAGCCGGATTTGTATCATCG
TTGGCAGCATTCAGGTCGAACGAGCATGGAGAGCAACAGAGCCTCGGACG
TGTTGAGCGTGGTGGTACTGTCGGGCGTTGCCCGCTCCGCGGAGATCGAG
CTGGTATGCCTTGCAGCCTGCAACGCCTGCCGCGAGAACGGCGCAGATTA
TTCCCTGGTGGTCGACACGGGGAATATCGATCTCGTTCGATCATCAGCGT
CCACACAAGAAGAGGAAACACCGCCATCATCCGGCTGCACCAGCGCTAGC
ACCAGCATCAACAATTATGGCAGAAGTGCCGTGTCATCGCCTGCCGTGCC
ATCGCCACCGTCTGCGCCGGTGACAGTTTGCTCAAGAATAATGCCTCACC
GGCGGATCCACTCCCTGGCGCTACGCCTGGACTTACCATTGTCACAGCTC
ATCTGGCCGGAGCAGCTCCGCGTTCTCAAGTTTGGGTGGATGTTCGACCA
CCCCCTCGATCGTCCACTACCTGGCTCGCTCATCAATCTCGACCTTGGGA
ACGCGTTCAACCATCACATAGAGGAAGTCGCTTGGCCCGCCACTTTGCAA
AGCCTTACGTTCGGCGACCGGTTCAACAGGCAGGTAGAGCTGGCGGTGTG
GCCAGCGACTCTGAGACGCCTCTCTTTCGGGTCGTCGTTTGATCAGCCCA
TCGCCAGGGTGCTGTGGCCACCCTCGCTAGAAGAGCTCCACCTCGGAGAC
GCGTTCAACCATCCGGTTAATTGGGCGGGCGCGCCCAACTTGAAAAGGCT
AGAGTTTGGGACGGCGTTCCGGTGCGCCGTCGACGGCATCGAATGGCCCA
AAGGGCTGAGGGAGTTGAAGTTCGGCGCTTGTTTTGACCAGGAGTTGCAA
GCGAGGGAGCTCCCGAGGGGTCTCAGGCTGCTCCGACTCCCAGACGTGTA
TGCCATGCACGACACCTTCGAGCCAGAAGGCTTGCCGCGCGGTTGCAAGC
TGCGCATTGATAGGACCGAAATGTTTGACCTCCTGCTTTACTGATGGCAA
CGATATAGGGGCCCTCGCCGTTTTCGTGATATGTAGTAGCTTGAGTGTGG
GCGGGCAAGCCGGGGACGAGATGAAATTGGTACGCTGGACGGATGGATAT
CTCGATTTATTTGTTTTGCATAACATGCACGGAGTAATATTTTTCAGATG
ACCCCAGGCAACCGTTTTTTATCAAACCCACGAGGGGGGATTTAGAGGGA
GGTGGGGGAGCGGCCTACAGCGCGTTGGTAGTGGTGTAGCAATGGTGCTG
ATGCCGTTGTTTTTGCCATGCTGTGGTTGAAATCTCATTTTTCCATCCAT
TAATCGATCACGGAGTAAAACGGAGTCTACGGCAAGTGTTTTTCGCATCA
CGGGTTGTCCAGGGGTCTAGGATAACCTTTTTTCGCGAGAAAACAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig15:84111..86806-

>mRNA_L-elsbetiae_contig15.3594.1 ID=mRNA_L-elsbetiae_contig15.3594.1|Name=mRNA_L-elsbetiae_contig15.3594.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1938bp|location=Sequence derived from alignment at L-elsbetiae_contig15:84111..86806- (Laminarionema elsbetiae ELsaHSoW15)
ATGGAGAGCAACAGAGCCTCGGACGTGTTGAGCGTGGTGGTACTGTCGGG
CGTTGCCCGCTCCGCGGAGATCGAGCTGGTATGCCTTGCAGCCTGCAACG
CCTGCCGCGAGAACGGCGCAGATTATTCCCTGGTGGTCGACACGGGGAAT
ATCGATCTCGTTCGATCATCAGCGTCCACACAAGAAGAGGAAACACCGCC
ATCATCCGGCTGCACCAGCGCTAGCACCAGCATCAACAATTATGGCAGAA
GTGCCGTGTCATCGCCTGCCGTGCCATCGCCACCGTCTGCGCCGGTGACA
GTTTGCTCAAGAATAATGCCTCACCGGCGGATCCACTCCCTGGCGCTACG
CCTGGACTTACCATTGTCACAGCTCATCTGGCCGGAGCAGCTCCGCGTTC
TCAAGTTTGGGTGGATGTTCGACCACCCCCTCGATCGTCCACTACCTGGC
TCGCTCATCAATCTCGACCTTGGGAACGCGTTCAACCATCACATAGAGGA
AGTCGCTTGGCCCGCCACTTTGCAAAGCCTTACGTTCGGCGACCGGTTCA
ACAGGCAGGTAGAGCTGGCGGTGTGGCCAGCGACTCTGAGACGCCTCTCT
TTCGGGTCGTCGTTTGATCAGCCCATCGCCAGGGTGCTGTGGCCACCCTC
GCTAGAAGAGCTCCACCTCGGAGACGCGTTCAACCATCCGGTTAATTGGG
CGGGCGCGCCCAACTTGAAAAGGCTAGAGTTTGGGACGGCGTTCCGGTGC
GCCGTCGACGGCATCGAATGGCCCAAAGGGCTGAGGGAGTTGAAGTTCGG
CGCTTGTTTTGACCAGGAGTTGCAAGCGAGGGAGCTCCCGAGGGGTCTCA
GGCTGCTCCGACTCCCAGACGTGTATGCCATGCACGACACCTTCGAGCCA
GAAGGCTTGCCGCGCGGTTGCAAGCTGCGCATTGATAGGACCGAAATGTT
TGACCTCCTGCTTTACTGAATGGAGAGCAACAGAGCCTCGGACGTGTTGA
GCGTGGTGGTACTGTCGGGCGTTGCCCGCTCCGCGGAGATCGAGCTGGTA
TGCCTTGCAGCCTGCAACGCCTGCCGCGAGAACGGCGCAGATTATTCCCT
GGTGGTCGACACGGGGAATATCGATCTCGTTCGATCATCAGCGTCCACAC
AAGAAGAGGAAACACCGCCATCATCCGGCTGCACCAGCGCTAGCACCAGC
ATCAACAATTATGGCAGAAGTGCCGTGTCATCGCCTGCCGTGCCATCGCC
ACCGTCTGCGCCGGTGACAGTTTGCTCAAGAATAATGCCTCACCGGCGGA
TCCACTCCCTGGCGCTACGCCTGGACTTACCATTGTCACAGCTCATCTGG
CCGGAGCAGCTCCGCGTTCTCAAGTTTGGGTGGATGTTCGACCACCCCCT
CGATCGTCCACTACCTGGCTCGCTCATCAATCTCGACCTTGGGAACGCGT
TCAACCATCACATAGAGGAAGTCGCTTGGCCCGCCACTTTGCAAAGCCTT
ACGTTCGGCGACCGGTTCAACAGGCAGGTAGAGCTGGCGGTGTGGCCAGC
GACTCTGAGACGCCTCTCTTTCGGGTCGTCGTTTGATCAGCCCATCGCCA
GGGTGCTGTGGCCACCCTCGCTAGAAGAGCTCCACCTCGGAGACGCGTTC
AACCATCCGGTTAATTGGGCGGGCGCGCCCAACTTGAAAAGGCTAGAGTT
TGGGACGGCGTTCCGGTGCGCCGTCGACGGCATCGAATGGCCCAAAGGGC
TGAGGGAGTTGAAGTTCGGCGCTTGTTTTGACCAGGAGTTGCAAGCGAGG
GAGCTCCCGAGGGGTCTCAGGCTGCTCCGACTCCCAGACGTGTATGCCAT
GCACGACACCTTCGAGCCAGAAGGCTTGCCGCGCGGTTGCAAGCTGCGCA
TTGATAGGACCGAAATGTTTGACCTCCTGCTTTACTGA
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