mRNA_L-elsbetiae_contig14999.3582.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14999.3582.1
Unique NamemRNA_L-elsbetiae_contig14999.3582.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14999.3582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14999contigL-elsbetiae_contig14999:1123..1431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Model size165
Cds size111
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14999.3582.1prot_L-elsbetiae_contig14999.3582.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14999 1123..1378 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.8696382-CDS-L-elsbetiae_contig14999:1122..12031622815605.8696382-CDS-L-elsbetiae_contig14999:1122..1203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 1123..1203 +
1691682986.855771-CDS-L-elsbetiae_contig14999:1122..12031691682986.855771-CDS-L-elsbetiae_contig14999:1122..1203Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 1123..1203 +
1622815605.883067-CDS-L-elsbetiae_contig14999:1348..13781622815605.883067-CDS-L-elsbetiae_contig14999:1348..1378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 1349..1378 +
1691682986.8664994-CDS-L-elsbetiae_contig14999:1348..13781691682986.8664994-CDS-L-elsbetiae_contig14999:1348..1378Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 1349..1378 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.893877-UTR-L-elsbetiae_contig14999:1378..14311622815605.893877-UTR-L-elsbetiae_contig14999:1378..1431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 1379..1431 +
1691682986.8811495-UTR-L-elsbetiae_contig14999:1378..14311691682986.8811495-UTR-L-elsbetiae_contig14999:1378..1431Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 1379..1431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14999.3582.1

>prot_L-elsbetiae_contig14999.3582.1 ID=prot_L-elsbetiae_contig14999.3582.1|Name=mRNA_L-elsbetiae_contig14999.3582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=37bp
RRSPRHTRKGQSSVGARVTASTAANSAVWSSRASSR*
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mRNA from alignment at L-elsbetiae_contig14999:1123..1431+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14999.3582.1 ID=mRNA_L-elsbetiae_contig14999.3582.1|Name=mRNA_L-elsbetiae_contig14999.3582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=309bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:1123..1431+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGAAGCCCACGGCATACTCGAAAAGGCCAATCTTCTGTCGGCGCCCG
GGTTACGGCCTCCACCGCCGCCAACTCTGCGGTGAGCCATGAAGCCCAAC
TCAGGGTAAGGAGGAAGGTAACGTGCATGAAGCCCAGGAGCACTCGTTGT
TTCGTTTGTGGTTTCAACCAATGGACCCCCTGTAACCTAGCCCCGGCCTC
CGTTCTAACCATGTTTTTCGCCGCAGGTATGGTCAAGCCGGGCTTCATCT
CGCTAGCCAGTTCATGCGGAGGGAAAATGTTGCCCCCCGGCTCCCCTCGA
GAACAAGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14999:1123..1431+

>mRNA_L-elsbetiae_contig14999.3582.1 ID=mRNA_L-elsbetiae_contig14999.3582.1|Name=mRNA_L-elsbetiae_contig14999.3582.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=222bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:1123..1431+ (Laminarionema elsbetiae ELsaHSoW15)
CGCCGAAGCCCACGGCATACTCGAAAAGGCCAATCTTCTGTCGGCGCCCG
GGTTACGGCCTCCACCGCCGCCAACTCTGCGCGCCGAAGCCCACGGCATA
CTCGAAAAGGCCAATCTTCTGTCGGCGCCCGGGTTACGGCCTCCACCGCC
GCCAACTCTGCGGTATGGTCAAGCCGGGCTTCATCTCGCTAGGTATGGTC
AAGCCGGGCTTCATCTCGCTAG
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