mRNA_L-elsbetiae_contig14999.3581.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14999.3581.1
Unique NamemRNA_L-elsbetiae_contig14999.3581.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14999.3581.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14999contigL-elsbetiae_contig14999:568..1205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Exons1
Model size639
Cds size354
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.934174-CDS-L-elsbetiae_contig14999:567..9211622815605.934174-CDS-L-elsbetiae_contig14999:567..921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 568..921 +
1691682986.8942084-CDS-L-elsbetiae_contig14999:567..9211691682986.8942084-CDS-L-elsbetiae_contig14999:567..921Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14999 568..921 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.947138-UTR-L-elsbetiae_contig14999:921..12051622815605.947138-UTR-L-elsbetiae_contig14999:921..1205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 922..1205 +
1691682986.9083004-UTR-L-elsbetiae_contig14999:921..12051691682986.9083004-UTR-L-elsbetiae_contig14999:921..1205Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14999 922..1205 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14999.3581.1prot_L-elsbetiae_contig14999.3581.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14999 568..921 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14999.3581.1

>prot_L-elsbetiae_contig14999.3581.1 ID=prot_L-elsbetiae_contig14999.3581.1|Name=mRNA_L-elsbetiae_contig14999.3581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=118bp
AAEAAFDLFAVSFEGDYTSRLLPLAELLLTTIYLVFAAAATILALFLTAV
ALSFEFFTVFPWRQRRQPPSSWSFLSQLGPRQLSVSHERECLVDTVFLRD
FGHTISHVSSAIIFMFL*
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mRNA from alignment at L-elsbetiae_contig14999:568..1205+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14999.3581.1 ID=mRNA_L-elsbetiae_contig14999.3581.1|Name=mRNA_L-elsbetiae_contig14999.3581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=638bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:568..1205+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCGAAGCGGCCTTCGACTTATTTGCCGTGAGTTTTGAAGGTGACTA
CACCTCACGTTTGTTACCCCTCGCCGAACTCCTCCTCACAACGATATACC
TAGTTTTTGCCGCGGCAGCTACCATTCTCGCTCTCTTTTTGACGGCGGTC
GCTCTGAGTTTCGAGTTCTTCACAGTCTTTCCTTGGCGGCAGCGTCGACA
GCCGCCTTCTTCTTGGTCGTTTCTTTCGCAGCTAGGGCCACGCCAGCTTT
CTGTCTCCCATGAGCGCGAGTGTTTGGTGGACACTGTTTTTCTTCGGGAT
TTTGGCCACACCATTTCACACGTCTCCTCTGCCATTATTTTCATGTTTTT
GTAGAATTGTCTGCTCGCTGTTTTTCGAGGTGTTTTCTCGCCTGCGATAT
CGATCACTCTTCAGGATACTCGGGAGCTTCTCCGACGGAGCGTATCTCAA
TCTTGTTCGCGCGTAGTCGGAGGGAGCGAGGATCTTCTGGGCCAGACCCA
AGCCGGGTGGAGGCAGCAGGAGGGAGCGGCGAAGGAGAGACAAGGGCGTG
AAGGACGCCGAAGCCCACGGCATACTCGAAAAGGCCAATCTTCTGTCGGC
GCCCGGGTTACGGCCTCCACCGCCGCCAACTCTGCGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14999:568..1205+

>mRNA_L-elsbetiae_contig14999.3581.1 ID=mRNA_L-elsbetiae_contig14999.3581.1|Name=mRNA_L-elsbetiae_contig14999.3581.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=708bp|location=Sequence derived from alignment at L-elsbetiae_contig14999:568..1205+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGCCGAAGCGGCCTTCGACTTATTTGCCGTGAGTTTTGAAGGTGACTA
CACCTCACGTTTGTTACCCCTCGCCGAACTCCTCCTCACAACGATATACC
TAGTTTTTGCCGCGGCAGCTACCATTCTCGCTCTCTTTTTGACGGCGGTC
GCTCTGAGTTTCGAGTTCTTCACAGTCTTTCCTTGGCGGCAGCGTCGACA
GCCGCCTTCTTCTTGGTCGTTTCTTTCGCAGCTAGGGCCACGCCAGCTTT
CTGTCTCCCATGAGCGCGAGTGTTTGGTGGACACTGTTTTTCTTCGGGAT
TTTGGCCACACCATTTCACACGTCTCCTCTGCCATTATTTTCATGTTTTT
GTAGGCGGCCGAAGCGGCCTTCGACTTATTTGCCGTGAGTTTTGAAGGTG
ACTACACCTCACGTTTGTTACCCCTCGCCGAACTCCTCCTCACAACGATA
TACCTAGTTTTTGCCGCGGCAGCTACCATTCTCGCTCTCTTTTTGACGGC
GGTCGCTCTGAGTTTCGAGTTCTTCACAGTCTTTCCTTGGCGGCAGCGTC
GACAGCCGCCTTCTTCTTGGTCGTTTCTTTCGCAGCTAGGGCCACGCCAG
CTTTCTGTCTCCCATGAGCGCGAGTGTTTGGTGGACACTGTTTTTCTTCG
GGATTTTGGCCACACCATTTCACACGTCTCCTCTGCCATTATTTTCATGT
TTTTGTAG
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