mRNA_L-elsbetiae_contig14991.3577.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14991.3577.1
Unique NamemRNA_L-elsbetiae_contig14991.3577.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Match: A0A6H5K5A7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5A7_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 1.020e-12
Identity = 60/89 (67.42%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:  139 GGGSDGDFGLGAIWGDATTHPFDPGKAEQDVTIDSSSSXXXXXXXXXXXXXXXX---NENGDEGLDETWSGTPTHHFNPGKNFSRGARR 396
            GG   GD GL  IW  A THPFDPGKAE  V+  S   XXXXXXXXXXXXXXXX   + +GDEGLDETWSG PTH F+PG   SRGARR
Sbjct: 1046 GGDGSGDEGLDEIWSGAPTHPFDPGKAEGGVSSSSXXXXXXXXXXXXXXXXXXXXXXDGSGDEGLDETWSGAPTHPFDPGTTCSRGARR 1134
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BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Match: A0A6H5L015_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L015_9PHAE)

HSP 1 Score: 53.9 bits (128), Expect = 8.470e-6
Identity = 24/29 (82.76%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:  310 GDEGLDETWSGTPTHHFNPGKNFSRGARR 396
            GDEGLDETWSG PTH F+PGK  SRGARR
Sbjct:  215 GDEGLDETWSGAPTHPFDPGKTSSRGARR 243
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14991.3577.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K5A7_9PHAE1.020e-1267.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L015_9PHAE8.470e-682.76CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14991contigL-elsbetiae_contig14991:1005..1405 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size401
Cds size399
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.7190392-CDS-L-elsbetiae_contig14991:1004..14031622815605.7190392-CDS-L-elsbetiae_contig14991:1004..1403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14991 1005..1403 +
1691682986.806703-CDS-L-elsbetiae_contig14991:1004..14031691682986.806703-CDS-L-elsbetiae_contig14991:1004..1403Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14991 1005..1403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14991.3577.1prot_L-elsbetiae_contig14991.3577.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14991 1005..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14991.3577.1

>prot_L-elsbetiae_contig14991.3577.1 ID=prot_L-elsbetiae_contig14991.3577.1|Name=mRNA_L-elsbetiae_contig14991.3577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=133bp
AVCSRHRGVCSRQRRRCQSVVFESDIQHAEGYKSNNSSCSGSRNEGGGGS
DGDFGLGAIWGDATTHPFDPGKAEQDVTIDSSSSSSSSSSNDDGGGDGSG
NENGDEGLDETWSGTPTHHFNPGKNFSRGARRG
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mRNA from alignment at L-elsbetiae_contig14991:1005..1405+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14991.3577.1 ID=mRNA_L-elsbetiae_contig14991.3577.1|Name=mRNA_L-elsbetiae_contig14991.3577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=401bp|location=Sequence derived from alignment at L-elsbetiae_contig14991:1005..1405+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTATGTTCGCGACACCGCGGTGTCTGTTCACGGCAGCGGCGACGTTG
TCAATCTGTCGTTTTCGAGAGCGATATCCAGCATGCTGAGGGTTACAAAA
GCAACAATAGCAGCTGCAGCGGCAGCCGCAACGAGGGTGGTGGTGGGAGC
GACGGGGACTTTGGTCTGGGTGCTATCTGGGGCGATGCCACGACCCACCC
TTTCGACCCCGGGAAGGCCGAGCAGGATGTGACAATCGACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACGATGACGGCGGCGGCGATGGAAGCGGC
AATGAGAACGGGGATGAGGGGCTGGATGAAACCTGGAGTGGAACCCCGAC
GCACCACTTCAACCCGGGGAAGAATTTTTCGCGGGGCGCGAGGCGAGGGG
G
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14991:1005..1405+

>mRNA_L-elsbetiae_contig14991.3577.1 ID=mRNA_L-elsbetiae_contig14991.3577.1|Name=mRNA_L-elsbetiae_contig14991.3577.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=798bp|location=Sequence derived from alignment at L-elsbetiae_contig14991:1005..1405+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTATGTTCGCGACACCGCGGTGTCTGTTCACGGCAGCGGCGACGTTG
TCAATCTGTCGTTTTCGAGAGCGATATCCAGCATGCTGAGGGTTACAAAA
GCAACAATAGCAGCTGCAGCGGCAGCCGCAACGAGGGTGGTGGTGGGAGC
GACGGGGACTTTGGTCTGGGTGCTATCTGGGGCGATGCCACGACCCACCC
TTTCGACCCCGGGAAGGCCGAGCAGGATGTGACAATCGACAGCAGCAGCA
GCAGCAGCAGCAGCAGCAGCAACGATGACGGCGGCGGCGATGGAAGCGGC
AATGAGAACGGGGATGAGGGGCTGGATGAAACCTGGAGTGGAACCCCGAC
GCACCACTTCAACCCGGGGAAGAATTTTTCGCGGGGCGCGAGGCGAGGGG
CTGTATGTTCGCGACACCGCGGTGTCTGTTCACGGCAGCGGCGACGTTGT
CAATCTGTCGTTTTCGAGAGCGATATCCAGCATGCTGAGGGTTACAAAAG
CAACAATAGCAGCTGCAGCGGCAGCCGCAACGAGGGTGGTGGTGGGAGCG
ACGGGGACTTTGGTCTGGGTGCTATCTGGGGCGATGCCACGACCCACCCT
TTCGACCCCGGGAAGGCCGAGCAGGATGTGACAATCGACAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAACGATGACGGCGGCGGCGATGGAAGCGGCA
ATGAGAACGGGGATGAGGGGCTGGATGAAACCTGGAGTGGAACCCCGACG
CACCACTTCAACCCGGGGAAGAATTTTTCGCGGGGCGCGAGGCGAGGG
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