mRNA_L-elsbetiae_contig1499.3575.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI) HSP 1 Score: 253 bits (647), Expect = 8.300e-76 Identity = 140/356 (39.33%), Postives = 200/356 (56.18%), Query Frame = 3 Query: 222 AGYCPPCDVLFPELERSPDSGKLVQRVEMQMRGEPKSGTTFMFHWAHGAMVHACALLNLSFGSKACRMSDAG---REATGTPKPET-------VVLTFEP--------ALGVDDARCPCAGVERVEIIMTDYHKHMLPVRGSCQWHHSNGLVVDEEECMSVANRPVQNHADLWNCVEQAGCQISDDRPQFVMMRDPRPMAVSSFFYLQTHPETRGGKHP----ALNMTVDDAVMTMLPGIARYVGLRFNLFQGLLERQSEVFWYDDALADPLQWHYRWFNFAGLHLPGSVVRAAADASVRGEFDFWTEGGPNKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGV 1223 A CPPC+ +F +L + Q VE+Q+RGEPKSGT+FMF WA A++ C L +G C G R PET V F+P A G + CPC+ V++V I+++ KH LPV SC W H + + + + C +V R V N+ D C++Q C+I DDR Q +++RDPR +AVSSFF+L+TH HP + +VD V+ MLP I ++ LR+ + L ++ F YD++LADPLQWH RW + GL P VV A + S+R E+ F +G +KHPGGKE + KR+W+DE+S + +++ I R WLPPV+L K G+ Sbjct: 80 ADECPPCETMFGKLNGAQ------QHVELQLRGEPKSGTSFMFEWAVNALMVTCEELGRLYGEGTCTFRWRGFFSRRKQKPVSPETALVDMKEVFFVFKPNRQHGRSSAGGPSASPCPCSTVDKVSIMVSSLFKHDLPVPPSCPWQHVDNVTPENKGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTH------HHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLVLHEKLGGKTVEFTYDESLADPLQWHQRWLSSVGLTPPPGVVLQATNTSLRREYGFAGKG-VDKHPGGKEATEKRTWEDEISHDVAEQLEGICREWLPPVLLEKFGI 422
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE) HSP 1 Score: 201 bits (512), Expect = 2.070e-58 Identity = 100/234 (42.74%), Postives = 143/234 (61.11%), Query Frame = 3 Query: 531 VERVEIIMTDYHKHMLPVRGSCQWHHSNGLVVDEEECMSVANRPVQNHADLWNCVEQAGCQISDDRPQFVMMRDPRPMAVSSFFYLQTHPETRGGK-HPALNMTVDDAVMTMLPGIARYVGLRFNLFQGLLERQSEVFWYDDALADPLQWHYRWFNFAGLHLPGSVVRA-AADASVRGEFDFWTEGGPNKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGVP 1226 + RVEI ++ KH LPV SC W H +G V + + C S PV+ ADLW C+++ C+I+D+R QFV +RDPR +AVS++F+ + H + K HP+L+ TV + +LP + + LR LF GLL ++E+FWY+ + DP WHYRW +FAGL LPG + A+ N HPGG E S R+W+DEVSP + E+D I+R+WLP V+LA+ G+P Sbjct: 2 LRRVEISISTVDKHRLPVNESCPWSHGSGTVHEGDGCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFH-RVHKDNNYQKLHPSLDQTV----LEILPVLCHFTTLRHILFGGLLSNRTELFWYEQTVEDPFDWHYRWASFAGLILPGGWIDGMVAENQAHKHL--------NPHPGGAETSDNRTWQDEVSPGIRPEMDSILRKWLPGVLLARYGIP 222
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: A0A6H5JG38_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG38_9PHAE) HSP 1 Score: 156 bits (395), Expect = 1.180e-41 Identity = 75/172 (43.60%), Postives = 117/172 (68.02%), Query Frame = 3 Query: 714 ISDDRPQFVMMRDPRPMAVSSFFYLQTHPETRGGKHPALNMTVDDAVMTMLPGIARYVGLRFNLFQGLLERQSEVFWYDDALADPLQWHYRWFNFAGLHLPGSVVRAAADASVRGEFDFWTEGGPNKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGVPL 1229 + DD QF ++RDPR +AVS++FY+++HP H + ++D+AV+ +LP + ++ +R LF G L +SE+FWY+DA+ DPL WHYRW +FAG LP S ++ DA++ E + P HPGG++ S+KR+W+DE+SP + E+D I+R WLP V+L ++G+PL Sbjct: 25 LLDDSLQFAVLRDPRAVAVSTYFYVKSHPAFYSD-HVSRGKSLDEAVLLILPQLCQFTTIRHLLFDGQLSDKSEIFWYEDAMRDPLGWHYRWASFAGFALPASWIKDI-DATLP-EAQQKVKRDP--HPGGQQVSSKRTWEDEISPAIREEMDSILRTWLPGVLLERLGIPL 191
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: D7G2T4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2T4_ECTSI) HSP 1 Score: 133 bits (334), Expect = 3.070e-33 Identity = 68/162 (41.98%), Postives = 101/162 (62.35%), Query Frame = 3 Query: 744 MRDPRPMAVSSFFYLQTHPETRGGKHPALNMTVDDAVMTMLPGIARYVGLRFNLFQGLLERQSEVFWYDDALADPLQWHYRWFNFAGLHLPGSVVR-AAADASVRGEFDFWTEGGPNKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGVP 1226 MRDPR +AVS++FY++ P HP+ ++D+AV+ +LP I ++ +R LF G L +SE+FWY+DA+ DPL W+ RW + AG LP ++ A + E D E HPGG+ S+ R+W+DEVSP+ E++ I+R WLP V+LA+ VP Sbjct: 1 MRDPRAVAVSTYFYIKRSPIHL--HHPSRGKSLDEAVVVILPQICQFTTIRHILFDGQLSDRSEIFWYEDAMRDPLGWYNRWASLAGFTLPARWIKDIQASLTEAAENDRKRE----PHPGGQVVSSDRTWEDEVSPETRLEMNSILRTWLPGVLLARFDVP 156
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: D7FUF6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF6_ECTSI) HSP 1 Score: 112 bits (279), Expect = 3.460e-26 Identity = 51/108 (47.22%), Postives = 75/108 (69.44%), Query Frame = 3 Query: 903 LFQGLLERQSEVFWYDDALADPLQWHYRWFNFAGLHLPGSVVRAAADASVRGEFDFWTEGGPNKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGVP 1226 +F+GLL +SE+FWY++ L DP WHYRW +FAGL LP + + +V E F+ N+HPGG + + KR+W+DEVSP +H +++ I+R+WLPPV+LA+ VP Sbjct: 1 MFEGLLSDRSEMFWYEETLEDPFAWHYRWASFAGLILPRAWIDGMV--AVNQERLFF-----NRHPGGGKRTAKRTWRDEVSPGIHHDMESILRKWLPPVLLARFEVP 101
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Match: A0A6H5KK10_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK10_9PHAE) HSP 1 Score: 60.1 bits (144), Expect = 3.540e-8 Identity = 25/46 (54.35%), Postives = 35/46 (76.09%), Query Frame = 3 Query: 1089 NKHPGGKEPSTKRSWKDEVSPQLHAEIDEIVRRWLPPVVLAKIGVP 1226 N HPGG E KR+W++EVSP + E+D I+R+WLP V+LA+ G+P Sbjct: 12 NPHPGGAETPFKRTWQNEVSPGIRPEMDSILRKWLPGVLLARYGIP 57 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1499.3575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 6
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1499.3575.1 >prot_L-elsbetiae_contig1499.3575.1 ID=prot_L-elsbetiae_contig1499.3575.1|Name=mRNA_L-elsbetiae_contig1499.3575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=389bp MLTTKAKIVFLLGWLSGLMMMFTMLQLGWLRETYSRERQQPLATPQDAGYback to top mRNA from alignment at L-elsbetiae_contig1499:11065..13090+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1499.3575.1 ID=mRNA_L-elsbetiae_contig1499.3575.1|Name=mRNA_L-elsbetiae_contig1499.3575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2026bp|location=Sequence derived from alignment at L-elsbetiae_contig1499:11065..13090+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1499:11065..13090+ >mRNA_L-elsbetiae_contig1499.3575.1 ID=mRNA_L-elsbetiae_contig1499.3575.1|Name=mRNA_L-elsbetiae_contig1499.3575.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2334bp|location=Sequence derived from alignment at L-elsbetiae_contig1499:11065..13090+ (Laminarionema elsbetiae ELsaHSoW15)back to top |