mRNA_L-elsbetiae_contig1499.3574.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1499.3574.1
Unique NamemRNA_L-elsbetiae_contig1499.3574.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: D7FMS9_ECTSI (Rubredoxin-like domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMS9_ECTSI)

HSP 1 Score: 362 bits (928), Expect = 3.280e-115
Identity = 222/355 (62.54%), Postives = 251/355 (70.70%), Query Frame = 2
Query:   95 LASALALTLGAGTQPTQAFVVAPQ-HPLVNPTCARGCSSVPGPLSQAVPVPLRDGGGSAWSYGRERGGYGYASSPTSRS-NKVGVFMRAGKAGRGRRVEIEGAGGETRRVQRRSRK-PDLRSMRRIGLQGAAAAVVVQ-------EQDLGAQTSVTGEQSQEEKDAMSLAEKYEAGQGLRERQMMEDAQAGTVQDKYTQIYVPVDGIVIKKTYGFWTWQVFGFVFVQHFVRNIIRKGGSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHNQKRNEAQEAKAAG---ADGEGGDA----DGDSAGSVVTSA 1108
            L   LAL LGA T    AFVV  Q H     +CARG SS P      VPV    G G A SY R R   GYA SP+  + N++   MR  + G G  VEIEG GGETRRVQ+RSR+ PDLR    IGLQ AAA VV Q       E+  GA+    GE+S EE   M+LAE ++A Q L E  MM D Q GT+QD+YT++Y+P+DG+VIKKTYGFWTWQVFGF+FVQHFVRN++RKGGSLKKTSM+EL WDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPEC+APRS+FFDANDK+DPHNQKR E   A  AG   ADGEGG +    DG S G VV SA
Sbjct:    2 LGLVLALALGANTH---AFVVTTQQHRPALSSCARGQSSSP------VPV----GDGPARSYSRLRRTGGYAVSPSGNTKNRLSTCMRVRRPGGGD-VEIEGVGGETRRVQQRSRRRPDLRQ---IGLQTAAAVVVQQDEVVDVAEEQAGAEGDTIGEESGEE--FMNLAESFDASQRLVEESMM-DPQTGTIQDQYTKLYMPMDGLVIKKTYGFWTWQVFGFIFVQHFVRNLVRKGGSLKKTSMSELKWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECDAPRSSFFDANDKNDPHNQKRLEKMAANVAGPGKADGEGGGSEDADDGSSEGEVVASA 336          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A836CG96_9STRA (Rubredoxin-like domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CG96_9STRA)

HSP 1 Score: 112 bits (279), Expect = 3.230e-24
Identity = 55/107 (51.40%), Postives = 74/107 (69.16%), Query Frame = 2
Query:  731 FVFVQHFVRNIIRKGGSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHN--QKRNEAQEAKAA 1045
            FV VQ F+   +RKG S+++    EL W+++VTE EH+ EL AY CE+CGYTLFPAR RH+ FF++V+D+ CPEC A +S F D +D  DP N  + R E + A AA
Sbjct:   12 FVIVQFFI-TWVRKGFSIRRVMAPELKWEYLVTEKEHIKELHAYRCEQCGYTLFPARNRHKKFFEDVKDYTCPECGAAKSEFVDIHDLTDPRNIDRPREELEAALAA 117          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A7S2D095_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2D095_9EUKA)

HSP 1 Score: 77.4 bits (189), Expect = 1.130e-11
Identity = 41/105 (39.05%), Postives = 57/105 (54.29%), Query Frame = 2
Query:  695 KTYGFWTWQVFGFVFVQHFVRNIIRKG--GSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDP 1003
            KT   WT  +F  + V+     I+R    G+L+     E ++ +I        EL  +CCE CGYT+FPARGR   FF +   FKCP C++P+ +FFD  D  DP
Sbjct:  121 KTSFLWTGIIFTLLIVK-----IVRMAAAGNLRAAFFEEPNYKYIARSDAEEAELHEFCCETCGYTMFPARGREGKFFPDA--FKCPNCDSPKESFFDMTDLSDP 218          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A0G4GWS9_VITBC (Rubredoxin-like domain-containing protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GWS9_VITBC)

HSP 1 Score: 75.5 bits (184), Expect = 1.740e-11
Identity = 40/95 (42.11%), Postives = 54/95 (56.84%), Query Frame = 2
Query:  752 VRNIIRKGGSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHNQKRNEAQEA 1036
            V N++ + G+ K+T         I+   E   EL  + CE CGYT+FPARGR   FF +  DF+CP C A +  F+D ND DDPHN+   E + A
Sbjct:  114 VLNLVTRSGA-KRTKA-------IIKTEEDAKELHRFTCENCGYTIFPARGREGKFFGD--DFECPVCGAKKEHFYDGNDPDDPHNKAPEEGESA 198          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A7J7IMV8_9RHOD (Rubredoxin-like domain-containing protein n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMV8_9RHOD)

HSP 1 Score: 74.7 bits (182), Expect = 4.840e-11
Identity = 38/89 (42.70%), Postives = 53/89 (59.55%), Query Frame = 2
Query:  758 NIIRKGGSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHNQKRNE 1024
            N++R+    KK     +  +    E +   EL  Y C +CGYTL+PARGR   FF +   FKCP+C AP+S F+D ND +DP NQ+ +E
Sbjct:  153 NVLRRLVRRKKAENVPIGSEKYRAESDE--ELHVYRCGQCGYTLYPARGRELKFFPKT--FKCPQCSAPKSEFWDLNDPNDPRNQETDE 237          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A8J6CCP8_DIALT (Rubredoxin-like domain-containing protein n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CCP8_DIALT)

HSP 1 Score: 71.2 bits (173), Expect = 2.450e-10
Identity = 32/65 (49.23%), Postives = 44/65 (67.69%), Query Frame = 2
Query:  848 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHNQKRNEAQEAKA 1042
            ELKA+ CE CGY L+PARGR   FF +   FKCP C++P+ +F+D ND +DP N + ++   A A
Sbjct:  144 ELKAFKCENCGYELYPARGREGKFFPDT--FKCPMCKSPKESFYDMNDANDPRNWEEDDENGADA 206          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: M1VCH9_CYAM1 (Rubredoxin-like domain-containing protein n=2 Tax=cellular organisms TaxID=131567 RepID=M1VCH9_CYAM1)

HSP 1 Score: 63.9 bits (154), Expect = 2.080e-7
Identity = 28/48 (58.33%), Postives = 33/48 (68.75%), Query Frame = 2
Query:  848 ELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDAND 991
            EL  Y C +CGYTL+PARGR   FF     FKCP+C AP+S F+D ND
Sbjct:  182 ELHVYRCGKCGYTLYPARGRELKFFPRT--FKCPQCSAPKSEFWDLND 227          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A7S1U8S4_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U8S4_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 4.030e-7
Identity = 33/86 (38.37%), Postives = 47/86 (54.65%), Query Frame = 2
Query:  803 ELSWDHIVTEPEHLLE--LKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHNQKRNEAQEAKAAGAD 1054
            E +WD    +    +E  L  + CE+CG+T++PARGR   FF +   F CP C A + +F+D ND  DP NQ+     +A   G D
Sbjct:  134 EPNWDAAELQATGEVEDVLHMFRCEDCGFTIYPARGREGKFFPKG--FTCPNCSASQESFYDLNDPTDPRNQEEXXXXDAGPPGKD 217          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A7S0E573_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0E573_9EUKA)

HSP 1 Score: 59.3 bits (142), Expect = 5.720e-6
Identity = 26/52 (50.00%), Postives = 32/52 (61.54%), Query Frame = 2
Query:  836 EHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDAND 991
            E   EL  + CE+CG+TLFPARGR   FF +   F+CP C A +  FFD  D
Sbjct:  148 EEEAELHEFVCEDCGFTLFPARGREGKFFSDS--FRCPTCNAAKEKFFDLTD 197          
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Match: A0A0G4FDK8_9ALVE (Rubredoxin-like domain-containing protein n=1 Tax=Chromera velia CCMP2878 TaxID=1169474 RepID=A0A0G4FDK8_9ALVE)

HSP 1 Score: 56.6 bits (135), Expect = 7.490e-5
Identity = 38/110 (34.55%), Postives = 51/110 (46.36%), Query Frame = 2
Query:  752 VRNIIRKGGSLKKTSMAELSWDHIVTEPEHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDANDKDDPHN-------QKRNEAQEAKAAGADGE 1060
            V  +   GGS + T++ +   D        +  L  Y C  C Y + PA GR + F+    +  CPEC AP+ AFFDAND  DP +       +K  E  E   A  DGE
Sbjct:  128 VGTVFGGGGSARTTAIVKTDSD--------MKLLHKYVCSNCEYHIMPAIGREKKFYKP--ELGCPECGAPKEAFFDANDLSDPRSVEYAEKLRKETELMERIKAEIDGE 227          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1499.3574.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
D7FMS9_ECTSI3.280e-11562.54Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A836CG96_9STRA3.230e-2451.40Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A7S2D095_9EUKA1.130e-1139.05Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
A0A0G4GWS9_VITBC1.740e-1142.11Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7J7IMV8_9RHOD4.840e-1142.70Rubredoxin-like domain-containing protein n=1 Tax=... [more]
A0A8J6CCP8_DIALT2.450e-1049.23Rubredoxin-like domain-containing protein n=2 Tax=... [more]
M1VCH9_CYAM12.080e-758.33Rubredoxin-like domain-containing protein n=2 Tax=... [more]
A0A7S1U8S4_9STRA4.030e-738.37Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S0E573_9EUKA5.720e-650.00Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
A0A0G4FDK8_9ALVE7.490e-534.55Rubredoxin-like domain-containing protein n=1 Tax=... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1499contigL-elsbetiae_contig1499:1715..10329 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score365.2
Seed ortholog evalue4.1e-98
Seed eggNOG ortholog2880.D7FMS9
Hectar predicted targeting categorysignal peptide
EggNOG OGs2CZ9B@1,2S968@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionRubredoxin-type fold
Ec32 orthologEc-21_000280.1
Exons8
Model size2180
Cds size1236
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1499.3574.1prot_L-elsbetiae_contig1499.3574.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1499 1800..9470 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.3439815-UTR-L-elsbetiae_contig1499:1714..17991622815605.3439815-UTR-L-elsbetiae_contig1499:1714..1799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1499 1715..1799 +
1691682986.5725899-UTR-L-elsbetiae_contig1499:1714..17991691682986.5725899-UTR-L-elsbetiae_contig1499:1714..1799Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1499 1715..1799 +
1622815605.4603567-UTR-L-elsbetiae_contig1499:9470..103291622815605.4603567-UTR-L-elsbetiae_contig1499:9470..10329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1499 9471..10329 +
1691682986.6581655-UTR-L-elsbetiae_contig1499:9470..103291691682986.6581655-UTR-L-elsbetiae_contig1499:9470..10329Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1499 9471..10329 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.355087-CDS-L-elsbetiae_contig1499:1799..19291622815605.355087-CDS-L-elsbetiae_contig1499:1799..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 1800..1929 +
1691682986.582303-CDS-L-elsbetiae_contig1499:1799..19291691682986.582303-CDS-L-elsbetiae_contig1499:1799..1929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 1800..1929 +
1622815605.3662474-CDS-L-elsbetiae_contig1499:4028..42851622815605.3662474-CDS-L-elsbetiae_contig1499:4028..4285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 4029..4285 +
1691682986.592317-CDS-L-elsbetiae_contig1499:4028..42851691682986.592317-CDS-L-elsbetiae_contig1499:4028..4285Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 4029..4285 +
1622815605.3832793-CDS-L-elsbetiae_contig1499:5038..52391622815605.3832793-CDS-L-elsbetiae_contig1499:5038..5239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 5039..5239 +
1691682986.6035774-CDS-L-elsbetiae_contig1499:5038..52391691682986.6035774-CDS-L-elsbetiae_contig1499:5038..5239Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 5039..5239 +
1622815605.396374-CDS-L-elsbetiae_contig1499:5942..60411622815605.396374-CDS-L-elsbetiae_contig1499:5942..6041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 5943..6041 +
1691682986.613928-CDS-L-elsbetiae_contig1499:5942..60411691682986.613928-CDS-L-elsbetiae_contig1499:5942..6041Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 5943..6041 +
1622815605.41246-CDS-L-elsbetiae_contig1499:6699..68291622815605.41246-CDS-L-elsbetiae_contig1499:6699..6829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 6700..6829 +
1691682986.6229045-CDS-L-elsbetiae_contig1499:6699..68291691682986.6229045-CDS-L-elsbetiae_contig1499:6699..6829Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 6700..6829 +
1622815605.422278-CDS-L-elsbetiae_contig1499:8204..83171622815605.422278-CDS-L-elsbetiae_contig1499:8204..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 8205..8317 +
1691682986.6338787-CDS-L-elsbetiae_contig1499:8204..83171691682986.6338787-CDS-L-elsbetiae_contig1499:8204..8317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 8205..8317 +
1622815605.4320986-CDS-L-elsbetiae_contig1499:8674..88031622815605.4320986-CDS-L-elsbetiae_contig1499:8674..8803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 8675..8803 +
1691682986.6423721-CDS-L-elsbetiae_contig1499:8674..88031691682986.6423721-CDS-L-elsbetiae_contig1499:8674..8803Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 8675..8803 +
1622815605.4452066-CDS-L-elsbetiae_contig1499:9293..94701622815605.4452066-CDS-L-elsbetiae_contig1499:9293..9470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 9294..9470 +
1691682986.650023-CDS-L-elsbetiae_contig1499:9293..94701691682986.650023-CDS-L-elsbetiae_contig1499:9293..9470Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1499 9294..9470 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1499.3574.1

>prot_L-elsbetiae_contig1499.3574.1 ID=prot_L-elsbetiae_contig1499.3574.1|Name=mRNA_L-elsbetiae_contig1499.3574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=412bp
MLRLASALALTLGAGTQPTQAFVVAPQHPLVNPTCARGCSSVPGPLSQAV
PVPLRDGGGSAWSYGRERGGYGYASSPTSRSNKVGVFMRAGKAGRGRRVE
IEGAGGETRRVQRRSRKPDLRSMRRIGLQGAAAAVVVQEQDLGAQTSVTG
EQSQEEKDAMSLAEKYEAGQGLRERQMMEDAQAGTVQDKYTQIYVPVDGI
VIKKTYGFWTWQVFGFVFVQHFVRNIIRKGGSLKKTSMAELSWDHIVTEP
EHLLELKAYCCEECGYTLFPARGRHEVFFDEVEDFKCPECEAPRSAFFDA
NDKDDPHNQKRNEAQEAKAAGADGEGGDADGDSAGSVVTSAAAGAPSSVA
DAKSPSATTTSGSGPAPAPASSAPKHAPPESTAAGESSAPPSGKKRPDGD
DDDDADDLLDF*
back to top

mRNA from alignment at L-elsbetiae_contig1499:1715..10329+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1499.3574.1 ID=mRNA_L-elsbetiae_contig1499.3574.1|Name=mRNA_L-elsbetiae_contig1499.3574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8615bp|location=Sequence derived from alignment at L-elsbetiae_contig1499:1715..10329+ (Laminarionema elsbetiae ELsaHSoW15)
GCGGTGCTCCTAGGACAGAGCCTTGCGCTTGCGTGAGAAACGTGTATCGT GAAGGAGCCATCCGCCTCTGTCACTCAGGGTCACCATGCTACGGCTTGCG AGCGCCCTAGCGCTGACCCTTGGAGCCGGCACACAGCCCACCCAGGCGTT CGTGGTTGCACCGCAGCACCCACTTGTGAACCCCACATGCGCACGGGGTT GCAGCTCTGTCCCAGGTGAAAGACCAGGAGGCCCTTGCGTATTTTATTGT TCAGCAGGTAGACTATTGTAGGAGATGTGTGTATGTAGACTACGGGTGTT CCTGCACACCTACCGCTGTTAGAACCAGACGGCATGCTCTGACTGGAAAT ACATACGCTTGTACATAGAGTACATACATACATACATACATACATACATA CATACATACATATAAACTCGTTTGCAGCCTTTATAGATACCATACATTCG TCTTGTTGTTCCAATGTATTTTTTGGTCGTTTCATGGGTTGTTCGCTTAC AATGCAAACTCATTGTTGACAGTATCGTCTAGTCTATCTCACACACACAT GTAGAGCTGGTCTCTACTTGTAGTCGAGACAGCAACAAGCCACCGAACAC GCTGGCATTGCTGAGATACATGTAGCCTAGTTAGTGGCAGCTAGCTTCCT TGGTGGGTACGCCTCGCTTGGTCGTTGCAATTAAGAGGGGTCCTCGCCGT CATTGACCTTCGGCTTCGAAGCCTGGTCCTCAGCGCCTGTGCAACAAGCT GTGCTCGAAAAACGAAGCTCATGGGAGTCGACTGTCTCTCTGTAGGTTAG GTTCCATTTTTGATTAACTGTTTTATTTTCGAAAAGCGGCAGCGTTGTGT GGGGGGGGGGGGGGGGGGGGTGTTGATGTCTCTTCGCTATTTTATTTTAG GTGTTTTTTGTGCTCCATCGGACCAATGTTACGTCACTGACGTATTGGAA TACCGTTTTGATCCCACGTAGCAGTCCCGTCCCGTCTCGAATGTGGGGGG TTCCATATTCGATTACAACAACTGGTTTCTGTTTAAAAGCGCACACGGGG GATACTCGTGCCCTCGCCTCAGCCGCCCCACCTCCGTCTAACGCGACATA TACAATAGCAGCTGTGACAGACAAGACGCGTGACAGCAGCAGTCTAACCA CTAACCACACGCAATGGACGGCGGTAGGGAGGTTAGTGTGGGCTGCAACG GCTGATGAGGGCGGCGTTACATCTGCGCCTGCTGTGTAGTAGAAGTAGAA TTTTAATCTTGCGCTGGTTGGTGTGCGACCCCGACCCACCGAGTGCCAAC AGTGCCAACAGCGTGCAGCCTCTTGCTTCTGAAGTATGGATGTGCGTGCA CCAGGTTGGCGGCGAAAAGAGCTACCGGTGCATAGCGTGCTCCCACGCAG CACTCACACCCCCAGTAGCAGCAGCGTCTCGTCTCGAGCTATCCACCGGG TAAAACAAGTCTATACATGCGCATATAGGCATAGATGCCTGCCATCATGG TTCGCGTTTTTGTCTTGTACGGTACATACTGCTGTGTTCATCCCATATTT TCTGGCTACTGTATATATGATGGTACAGTTGTCTGCCTTCTTCTCTTCTT CCGGTGCTCACACGCGTTTCGGTGTAGGGTTAGGTGCACGTACATCCCAT CCATATTAGTGCGGTGTTTCTTGTCTGTATTTACAATTGGCCAGACGGCC TGTCGGGGTTGCGCAGGAGGGGGTTCCCAACACCGTTTTTTTTTCCGTCT TTTTTCTTTTTTGTTTGTCCCCCACCTACCTGCTGCGATGCTCGCCCTTG CTTTTTATCGCGAGAGGGGTTCAGCCGTCCCTTTCCCTTGTCAATGGTGT TGTCGAACTTTGTGCACTCCCGAGCTTTTTTGTCTTATTACGAAAAAAAG TCGTAAAATAAGTACCTACGTTGTACCTCCACTGAGGAATCGCACTCCCG ACCTTGGCCGCTAGTAGGTTAACAAGGAAACCGATTGGAGGTATCTGTCA TTATGATTTTTCTCTAAGGCCTTCAGTACGTACAACGGTTTAGGCCTGTC GAGAGACAAAGGAAACACCTGCTACAACACGTGGCAGGTATAGACTACTG TGGACTGCACAGCTACATGTACGTATGCTGCACCCACCACCTTTTCATCA CCGGCCTGTATGGAAAGCATGGGCAGCTACAAACATGTCCCTACGTCGGA CAGCAGTTCCAATTAATATTGACATCTTAAAATGTAGGCTACTCGACCAC GCGGTCTGGTTCCTCCTTTTCTTCACGCTTATTTACCCCACCCCCTCCCG CTACATACCCACAGGCCCGCTGTCACAAGCAGTGCCGGTGCCCCTGCGCG ATGGAGGCGGCTCGGCGTGGAGCTACGGCAGGGAAAGGGGAGGGTATGGG TACGCATCGTCACCGACTAGCAGAAGCAACAAAGTTGGTGTTTTTATGCG CGCGGGGAAGGCTGGCAGGGGGCGCCGCGTGGAGATCGAGGGCGCGGGGG GGGAGACACGACGGGTGCAACGGCGTTCGAGAAAGCCAGACTTGCGGTCT ATGCGGAGGATCGGCCTGCAGGTTTGTGAGGTTCTGCGAGTCCGGCTTTT CCGATGAGAGTAGTCTACCCACAGGGACAGGGGGCACAATCAATCGTATT TTTGCGGGAGGGGTACACTTGTGTTTCCCGGAAACAGCTCCCTAAGTTTT GCATGTGGATAATGTTTGCCGTCTCGCACTACACAGTACCAATCATCGAT CATGCCCGCGGTCGTGGGTGCAATGGGATGATTTTGAGGTGTAGTGAGCC ACTCCCTCGTCTTGGAAGATGCCTACAGCGGTAGTCCGTTTTAGTCCTTT TTTTTTCCAAGTCTAGTACTTGGGTTTCCCCACCAAACGGGAGGCGATAT TCGATGTGTTGTCGTTGTTGGCACCCTAACGTCGAGTGCTCCGCGAGGTT ATTCTCTCGCCCAGTTCATAGGTGGTGTTAGTTGGTGGTGGATGGTGTTT AGGTTTTACAGCGCAGGTGCGAGAAAAAGTTCCTTCAACTATCCTGCATG TTTTTCTCCGGGGCATGCGCACCAACATCAGCATCAATATCAACATCAAC ACCAATCAATCGCATGCATACAAATCGAGCTACCGTACTTTCCAATCTGC GTGGCCTCTGCGTACCTCCCTTCCTGCGCAGCTTACCTCTTATTGCCGAC ACCAACAAAATCAATACCGATATTGCCCTAAATGTTCCCCTTTCCTACCC CGTCCAATCTTGTCTCATGCGACGGCTGTTGTTTTGACATGGCCGTCGTT GGCGCCGACCTCACCCTTCGGCAGGGGGCGGCGGCGGCAGTGGTGGTACA GGAGCAGGATCTTGGCGCGCAGACAAGCGTTACCGGAGAGCAGAGCCAAG AGGAAAAAGACGCCATGTCTCTGGCGGAGAAATACGAAGCCGGGCAGGGG CTGAGAGAGCGGCAGATGATGGAGGACGCCCAGGCGGGCACAGTGCAGGA CAAATACACACAGATCTATGTACCGGTGAGAGAGTGAGAGGGGCCCAGGA GGTAGGCTAATTTTCATTTCAGAGCGCGTAAAAACGAGCGTCAGACGTAT GTATGCCACACGCTCACGTATGTACGCAACTGCTGATGCAAGTGGTTAAC CTGATCTGGTGGAGGACGACGGTGTGTAGAAGAGCTGCTGCTGCTGCTGC GTGCTGCTGGGTTGAGTATATTTCACTTTACATGGAAGCTCAGTGATTTT TATTGTGTAGGTAGGCAGGCTCTGCTTGTTTAAGAGTAACGTCGTCTTTT TTTTCGCACCAACGAAGAGAGGGGGCTTTATGCGAGCTTGTGTGTGTTGC CAAGGTTGTCAAGGCACTGGGTTTTCCAAAACTTGTGATTTATGGCGGCA CTGAGAGGGGTGAACCATGGCCGTGGCTGGAGCCATAGGCTTTCTGCAAT AGAGCCAGCCCCCAATTCTCAAAAAGAGCGGTATTAAGGGGGCAGCGGGG GGGGTATTTATCTAGGAATTAGAGTGAAAAATTCCCCACAGCCATCCTTT CACAATTGGGAGCCCTGCTGCAGGAGGCCTGTAGTCATCAGGGTACGTAT CTTTTCAGGACAACCAAAGTATACTTATATTGTATCACTATCTCGTGGCG AATATCGCGCCGGTGACAACCACCAACCACATCACGACAGTCGTCGCATC TCGTTCCCATCCATGGCGCCCCCTGCAGGTGGACGGCATAGTGATTAAAA AGACGTACGGGTTCTGGACGTGGCAGGTCTTCGGCTTCGTCTTTGTCCAA CACTTCGTGAGGAACATCATTCGAAAGGTGACGTGCGGCAGCAGTCTTGC GAACCTCTCTCGGCTGTCTGTTCTCCCTCGCCTCTCTTCTCCCGCGTGCG CTGTTCGTGTCCGTCGACTGCTGTCACGTCGTTGTCCTACCTGGACAGTA GCAGCATGGTTGGCGGTGTTTTGTGGTTGTGCTTTTGCCGTGAATTCGTT GGTTCAGTGTGTGTGCTCTACATGTATCGTCTACCCGCGAGGCTCCTCGG TGCATTGCATATGTTGTAACCCCCGTCTCCGGGCGTATGCTATGCTGTGC CAGTGAAGTGCGTCGATCTCGGTGCGCACTACCTCAGGTTTAGCTACTGG GGTGTGACGATGTAGTCTTGCGAGCTGCAGCCAGCGAGGCCACCTTGCCA AGCCCTTTGCAACCTGTACTTCACTCTTCCAAAATATGTTTTGCGCGTCA CCCGAACTGCAAGCGATTTACAGACGCTACGATATTGATATGCAAGGTTA GGGTTGTTTGGACTTACAATACCTGCTAGTTGCAGGTTTCTGCCTCCGCG GGTTGTCCCGGAAACGTTAACACACCCCACGTCCCAGGGGTCTTAAGGTG GCTGGTTTCAGCACTAAACACGACCGTTTTTGTGATATCTCCTACGTGCC CCCCCGTGGTCTCCTCTGTCCGTGGTTGGGTGCAGGGAGGAAGCCTGAAA AAGACTTCCATGGCGGAGTTGAGTTGGGACCACATCGTGACAGAGCCTGA GCACCTGCTGGAGCTCAAGGCCTACTGCTGCGAGGAGTGCGGGTACACGC TCTTCCCGGCCAGAGGTGATCTGCGATACTTGGGACGTGCGACATGCAAC ACAATTCTCCCATGTAGCTACCCTAACCTTATTTTTCTCTCTTAAAACAT ACATGCAGCGCTCTTTCGTGCAGGAACTGCTTTGGTGCGGTGTGGGTGTG TGTTGCGTTGTCTTCGCGTTAAAAGCCGTTCCGATCTCTCTATCCAGTAC ACCTCCATGAGCCCGTACTAATCCAACACTGACGCGGTCAATTCCCGTGG TCACAGGATAACTTACCCTAAAACGGTGTAGACTACTGAAACTATGAAAT CAGTAAAATGGACCCGAGGGGTCCAAGGTGCGATGAGGAAATGTAGAGTG CACACCTCTGGTTGTAGCACGCCATCCGTTTTAAAGGCAGACGAAACCAT TCACCATTCTGCCGCGGGTTATGCAAGTGGAGCGTGTTGACACCCTACCG CTCTGCACCGCGTCAATGCGCTAGGCTACCACATAGGTACTCCAGAATGG AATTTGTTCAGAATGGAATGTACTTCGTGGTTGGGCCCATCCATTTGACT AAATAGGCTGCGATACGCTTGCTGAGGCGTAGTGATGTAGGATGCGGAGG ACACTGCCTGTTAACCAGTTCAGCAAGCTCTAGAGCAAGCGCTAGAGGTG TTGGGACGAAAGATCGTTTTGATGCGGGTTTGATGCTGGCACGCGTACCA AACTCGCTTAGTGTGTGATGCTTATGTAGTAGGTAGATAGCTGCGGGGTT TTCCTTAAAGGTTGCGTTTCTATTTAACGGTAAGCAAGTGCGACCGCCGA GTAAATGCATGGTGAGTTTGGATATTGAGATGCATGTCATATGTACCTTT ATTGCGTTCGTTTTTGCCATGAGTTGCGAGCTATCCCCTCTCCCGAATCC TGTTTGGTGGGCAGTTTCTCCAAGCGGCGTGCTGCATGCACGACTGTCTA ACTAACTTTTAGCTTATTTGGATTGCCTCTGAGTGGAAGGTATCTTCGGT GCTGCCCTATTTGCAACCGTACCCTATGCCCTGCCGCAACTGAACCTCTC TGTAGGTGAACTATGCTGCCCATGTAGTCGTGTCTGCTTCCACAAACTAT CAATTGCGGGTGTTCGCTCTTGTTATTTTGCGCTTGGTTCCGCACTCTTT TCTCGTGTCAAAACAGAATCAGCACGGGGTGCTTGTCTGAGCTCAACCGT TCACCCTTACCCTCACCCCAACTCAAACCCGTAGCCTAATCCTGCATTTG GTAGAGATTTGATGAGGTGTGAGCCCTGGAAATGCCCACCCCCCCCCCAA CACCATCGTTCGCCTTTACCGTCAACCTCTACCGCCGATCGCTACCCTAT CCCCACCCCTGACCCTCCCTGCCTCTTCTGTTTGGGTTAGGTCGCCACGA AGTATTTTTCGATGAGGTGGAAGACTTCAAGTGTCCCGAGTGCGAGGCAC CGCGGTCAGCTTTCTTCGACGCCAACGACAAAGACGACCCCCACAACCAA AAGGTAATTATGATAAACACATTGTACTTCTAGGCAGCCAGCTAACTAGA TGCACGCGTGTGATTTGACCTTGACTTGCTTGCCCAAAGTCGCAGGTATT GTATTATTTATAGGCTCAAAACAATCCAAGTACACTACGTGAGAGACACC CCTTTTTTTGTGTGTGTGTTTTTCGCCTCGAGTGTTTGTGCGTGCTGCTG CCGGCTACGGCTCTGCTGCTGCCGCTGTTGACTGCTGAATCTCAAGCGTC TCATTTTTTGTATATATATGCCCGATGTGTGAGAGGCGCCCCTTCATCCC GGAACCTTACCCCCTTCTCTCCCGTGGCCTGCTTAACGTAATTGTCGTGC GTGTTGCCAGCGCAACGAAGCTCAGGAAGCTAAGGCGGCAGGAGCTGATG GGGAGGGGGGGGACGCGGATGGTGACAGCGCGGGCAGCGTTGTGACATCT GCGGCAGCGGGGGCACCATCAAGTGTTGCAGATGCAAAGGTACGTGTGCG AATCCTTCTCATTGCGTTGCCGGTGCTGCTGCCGCGCTTCTTGTCGGGAG AAAAAGGAAGTGGCAGACTAAATAGTTGGATTTTTGGCGTGACAGCAGCA GCCACAGCTGCTGTTGGGATCGACTTGTACTTCGTGTCTCTACATACAAG TACCTGTTTTTGCCGCGTGACGAGAGCAGAGCAGCGAGCCGTGGAGCTTG TTTGAATCTTCCATACAGGTCGTTTGCCGCTCTTGAAGTGACATTCGAGA ACACCTCGAAGAGGCATTGCCACACAAAATGTCACCCACGGCTGCATGGC ATCGCTTTTCCAGTCCCCGCTCTGGTTCCACAATCTTGTTGCTGTTGCTG TTGCTGTTGGTGTTGGTGTCCATGCTACAACCCTGCGCTCCTCCTCTCCT CGCGTAACCTCTCGCCCCGCCCTCCTGCCTTGCCTTTTTTTGGCATGTCA TGTCTTTGTCTTCTCTTTGCTGCACGCAGTCGCCGAGCGCAACGACGACA TCAGGGTCAGGGCCAGCACCAGCACCAGCAAGCAGCGCTCCGAAACACGC GCCGCCAGAATCTACAGCGGCGGGAGAGAGTAGCGCTCCTCCTTCGGGCA AGAAGCGGCCAGATGGCGATGACGATGACGATGCTGACGATCTCCTCGAC TTTTAGACTGCGTACAGATGATAGACGCATCAATTAGAGAGAAAAAGGTT TGGCTGTTGATGTAGCGACTGCTGTGGTTGTTGGCGGTTGTGCTCTTCCT CGAGGAGGGCATCGTCATGTCTGTCTGTGTCGCGTCTTGCTGTGGCGTGT GCATGGATGGTGCTTCGTCGTGGTTGATGCTTTGACAATCTGTTTCGGTT TTCTTGGGGGTCATGTCTCGTGCTGACCTCGGCCGTGACTGCCAGAGCCA AAGGCACTCGTGTGATGATTTGTTTCGAACTAAAGCTTGTGTGTTGCTCA TGTTTTCCCTGTTGGACATGATGGATCGACTGCTGCTGGCTGTCCTTTCC TGTACCTAGCGCGGAGCTTTCCCGCGAAAGTGGCTACATAACGTGGCGTT TGAAAGCCGATCGCAATCGCTGTCCAGCCGCTGACCGGTTGACGCGACGT AGGTGTATCCCCGCGGCATGGCTTGCCCCCTCTCGCACAGAGAGTCGCAG TATGGGGGCGAGGGAGGCAGAGGTAGCCTTGGTTGACGCACAGAGTAGAG ATTGCGCCTTTACAAAGCTCGCAATTGTTCGGTGCACACCACTACTGTTT GTACAGCGGTAGGAGCTTGTGTCAGGCCTACATACATACAGAGGCTGCAG CAGTAGCCTGTAGGCTATGGCAACGCCAGACTACGATGGGAGGCCGTACA ATGGCGATGTGCTTGTTGTAGCTTCCCCGCCTCGTTGTTGGTTTTGTGGG TCGTTTTGCTGTCGGCTTCGGATACACAACCGCACGAGTAGCGATTTTTC AAACTTTTCTCTGCTGGCGAACCGCACCCCTGTGTGTGTCTTGCCCACTG CCCACAACCGCCCCC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1499:1715..10329+

>mRNA_L-elsbetiae_contig1499.3574.1 ID=mRNA_L-elsbetiae_contig1499.3574.1|Name=mRNA_L-elsbetiae_contig1499.3574.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2472bp|location=Sequence derived from alignment at L-elsbetiae_contig1499:1715..10329+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTACGGCTTGCGAGCGCCCTAGCGCTGACCCTTGGAGCCGGCACACA
GCCCACCCAGGCGTTCGTGGTTGCACCGCAGCACCCACTTGTGAACCCCA
CATGCGCACGGGGTTGCAGCTCTGTCCCAGATGCTACGGCTTGCGAGCGC
CCTAGCGCTGACCCTTGGAGCCGGCACACAGCCCACCCAGGCGTTCGTGG
TTGCACCGCAGCACCCACTTGTGAACCCCACATGCGCACGGGGTTGCAGC
TCTGTCCCAGGCCCGCTGTCACAAGCAGTGCCGGTGCCCCTGCGCGATGG
AGGCGGCTCGGCGTGGAGCTACGGCAGGGAAAGGGGAGGGTATGGGTACG
CATCGTCACCGACTAGCAGAAGCAACAAAGTTGGTGTTTTTATGCGCGCG
GGGAAGGCTGGCAGGGGGCGCCGCGTGGAGATCGAGGGCGCGGGGGGGGA
GACACGACGGGTGCAACGGCGTTCGAGAAAGCCAGACTTGCGGTCTATGC
GGAGGATCGGCCTGCAGGCCCGCTGTCACAAGCAGTGCCGGTGCCCCTGC
GCGATGGAGGCGGCTCGGCGTGGAGCTACGGCAGGGAAAGGGGAGGGTAT
GGGTACGCATCGTCACCGACTAGCAGAAGCAACAAAGTTGGTGTTTTTAT
GCGCGCGGGGAAGGCTGGCAGGGGGCGCCGCGTGGAGATCGAGGGCGCGG
GGGGGGAGACACGACGGGTGCAACGGCGTTCGAGAAAGCCAGACTTGCGG
TCTATGCGGAGGATCGGCCTGCAGGGGGCGGCGGCGGCAGTGGTGGTACA
GGAGCAGGATCTTGGCGCGCAGACAAGCGTTACCGGAGAGCAGAGCCAAG
AGGAAAAAGACGCCATGTCTCTGGCGGAGAAATACGAAGCCGGGCAGGGG
CTGAGAGAGCGGCAGATGATGGAGGACGCCCAGGCGGGCACAGTGCAGGA
CAAATACACACAGATCTATGTACCGGGGGCGGCGGCGGCAGTGGTGGTAC
AGGAGCAGGATCTTGGCGCGCAGACAAGCGTTACCGGAGAGCAGAGCCAA
GAGGAAAAAGACGCCATGTCTCTGGCGGAGAAATACGAAGCCGGGCAGGG
GCTGAGAGAGCGGCAGATGATGGAGGACGCCCAGGCGGGCACAGTGCAGG
ACAAATACACACAGATCTATGTACCGGTGGACGGCATAGTGATTAAAAAG
ACGTACGGGTTCTGGACGTGGCAGGTCTTCGGCTTCGTCTTTGTCCAACA
CTTCGTGAGGAACATCATTCGAAAGGTGGACGGCATAGTGATTAAAAAGA
CGTACGGGTTCTGGACGTGGCAGGTCTTCGGCTTCGTCTTTGTCCAACAC
TTCGTGAGGAACATCATTCGAAAGGGAGGAAGCCTGAAAAAGACTTCCAT
GGCGGAGTTGAGTTGGGACCACATCGTGACAGAGCCTGAGCACCTGCTGG
AGCTCAAGGCCTACTGCTGCGAGGAGTGCGGGTACACGCTCTTCCCGGCC
AGAGGGAGGAAGCCTGAAAAAGACTTCCATGGCGGAGTTGAGTTGGGACC
ACATCGTGACAGAGCCTGAGCACCTGCTGGAGCTCAAGGCCTACTGCTGC
GAGGAGTGCGGGTACACGCTCTTCCCGGCCAGAGGTCGCCACGAAGTATT
TTTCGATGAGGTGGAAGACTTCAAGTGTCCCGAGTGCGAGGCACCGCGGT
CAGCTTTCTTCGACGCCAACGACAAAGACGACCCCCACAACCAAAAGGTC
GCCACGAAGTATTTTTCGATGAGGTGGAAGACTTCAAGTGTCCCGAGTGC
GAGGCACCGCGGTCAGCTTTCTTCGACGCCAACGACAAAGACGACCCCCA
CAACCAAAAGCGCAACGAAGCTCAGGAAGCTAAGGCGGCAGGAGCTGATG
GGGAGGGGGGGGACGCGGATGGTGACAGCGCGGGCAGCGTTGTGACATCT
GCGGCAGCGGGGGCACCATCAAGTGTTGCAGATGCAAAGCGCAACGAAGC
TCAGGAAGCTAAGGCGGCAGGAGCTGATGGGGAGGGGGGGGACGCGGATG
GTGACAGCGCGGGCAGCGTTGTGACATCTGCGGCAGCGGGGGCACCATCA
AGTGTTGCAGATGCAAAGTCGCCGAGCGCAACGACGACATCAGGGTCAGG
GCCAGCACCAGCACCAGCAAGCAGCGCTCCGAAACACGCGCCGCCAGAAT
CTACAGCGGCGGGAGAGAGTAGCGCTCCTCCTTCGGGCAAGAAGCGGCCA
GATGGCGATGACGATGACGATGCTGACGATCTCCTCGACTTTTAGTCGCC
GAGCGCAACGACGACATCAGGGTCAGGGCCAGCACCAGCACCAGCAAGCA
GCGCTCCGAAACACGCGCCGCCAGAATCTACAGCGGCGGGAGAGAGTAGC
GCTCCTCCTTCGGGCAAGAAGCGGCCAGATGGCGATGACGATGACGATGC
TGACGATCTCCTCGACTTTTAG
back to top