mRNA_L-elsbetiae_contig1498.3568.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1498.3568.1
Unique NamemRNA_L-elsbetiae_contig1498.3568.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1498.3568.1 vs. uniprot
Match: A0A6H5J6Q7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J6Q7_9PHAE)

HSP 1 Score: 135 bits (339), Expect = 1.390e-28
Identity = 116/261 (44.44%), Postives = 155/261 (59.39%), Query Frame = 1
Query:  124 TGQEQERSLRACEARQYVARLRELQALMKARVEREIAGAKSRKSLKRKLREETSRSAQLERRLTDSEEELQRLRQEFDTEKCASEERWRSTLEQAVTAARKAERAKASGKVEALTVKRMRSLSLEVAELKEKHESLQVENANLLATLRSRPPR-----------RPAATSSFERRAEKELCRLSAATAAEESESGRASSGSAGTSSGRHDGPGLADIVSGLADR-------IRSSFSERASDAR-SPRRFTGRRFYSDEED 849
            T QE++R +RA EAR YV+RLRELQALMKARVEREI G                      + L D+E++ +RLR++F +EK A E+ WRSTL+QAV +AR+AER+KAS KVE   V+++RSLS EVA LK K + LQ ENA     LR+R PR           R   + SF RRA+ E+ RLSA+ AA  +   R+S+ SA  S        L++ +SG+++R       +R S SE AS    SPR    RRF+S E++
Sbjct:   65 TAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIEGXXXXXXXXXXXXXXXXXXXXXXQGLADAEDKQRRLRRKFASEKKALEQWWRSTLDQAVVSAREAERSKASAKVEGAMVRKLRSLSTEVATLKGKLKLLQEENATYAEALRARTPRPSSGPLKVDGDRLPRSESFGRRAKSEISRLSASAAATAAMDERSSADSAENSPRSKVSSTLSEFISGISERGLDLAVRLRKSISEHASGLGFSPRVSRRRRFFSGEDE 325          
BLAST of mRNA_L-elsbetiae_contig1498.3568.1 vs. uniprot
Match: D8LHR3_ECTSI (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHR3_ECTSI)

HSP 1 Score: 125 bits (315), Expect = 1.130e-25
Identity = 112/261 (42.91%), Postives = 149/261 (57.09%), Query Frame = 1
Query:  124 TGQEQERSLRACEARQYVARLRELQALMKARVEREIAGAKSRKSLKRKLREETSRSAQLERRLTDSEEELQRLRQEFDTEKCASEERWRSTLEQAVTAARKAERAKASGKVEALTVKRMRSLSLEVAELKEKHESLQVENANLLATLRSRPPR-----------RPAATSSFERRAEKELCRLSAATAAEESESGRASSGSAGTSSGRHDGPGLADIVSGLADR-------IRSSFSERASDAR-SPRRFTGRRFYSDEED 849
            T QE++R +RA EAR YV+RLRELQALMKARVEREI                          L D+E++ +RLR++F +EK A E+ WRSTL+QAV +AR+ ER+KAS KVE   V+R+RSLS EVA LK K + LQ ENA     L +R P            R   + SF RRA+ E+ RLSA+ AA  +   R+++GS   S        L + +SG+++R       +R S SE AS    SPR    RRF+S E++
Sbjct:   65 TAQEEQRRMRAAEARGYVSRLRELQALMKARVEREIEXXXXXXXXXXXXXXXXXXXXXXXXGLADAEDKQKRLRRKFASEKKALEQWWRSTLDQAVVSARETERSKASAKVEGAMVRRLRSLSTEVATLKGKLKLLQEENATYAEALHARTPPLSSGPLKDGRDRLPRSGSFGRRAKSEISRLSASAAAAAAMDERSTAGSEENSPRSKVSSTLTEFISGISERGLDLAVRLRKSISEHASGLGFSPRVSRRRRFFSGEDE 325          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1498.3568.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5J6Q7_9PHAE1.390e-2844.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHR3_ECTSI1.130e-2542.91Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1498contigL-elsbetiae_contig1498:536..8347 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-20_002740.1
Exons7
Model size3108
Cds size2388
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.840448-UTR-L-elsbetiae_contig1498:535..6671622815604.840448-UTR-L-elsbetiae_contig1498:535..667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 536..667 +
1691682986.2779853-UTR-L-elsbetiae_contig1498:535..6671691682986.2779853-UTR-L-elsbetiae_contig1498:535..667Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 536..667 +
1622815604.8534198-UTR-L-elsbetiae_contig1498:1018..10901622815604.8534198-UTR-L-elsbetiae_contig1498:1018..1090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 1019..1090 +
1691682986.2855914-UTR-L-elsbetiae_contig1498:1018..10901691682986.2855914-UTR-L-elsbetiae_contig1498:1018..1090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 1019..1090 +
1622815604.9415216-UTR-L-elsbetiae_contig1498:7831..83471622815604.9415216-UTR-L-elsbetiae_contig1498:7831..8347Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 7832..8347 +
1691682986.3698423-UTR-L-elsbetiae_contig1498:7831..83471691682986.3698423-UTR-L-elsbetiae_contig1498:7831..8347Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1498 7832..8347 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.8631332-CDS-L-elsbetiae_contig1498:1090..11491622815604.8631332-CDS-L-elsbetiae_contig1498:1090..1149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 1091..1149 +
1691682986.2973316-CDS-L-elsbetiae_contig1498:1090..11491691682986.2973316-CDS-L-elsbetiae_contig1498:1090..1149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 1091..1149 +
1622815604.8739393-CDS-L-elsbetiae_contig1498:2521..26061622815604.8739393-CDS-L-elsbetiae_contig1498:2521..2606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 2522..2606 +
1691682986.309425-CDS-L-elsbetiae_contig1498:2521..26061691682986.309425-CDS-L-elsbetiae_contig1498:2521..2606Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 2522..2606 +
1622815604.8838935-CDS-L-elsbetiae_contig1498:3528..36211622815604.8838935-CDS-L-elsbetiae_contig1498:3528..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 3529..3621 +
1691682986.319456-CDS-L-elsbetiae_contig1498:3528..36211691682986.319456-CDS-L-elsbetiae_contig1498:3528..3621Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 3529..3621 +
1622815604.8960242-CDS-L-elsbetiae_contig1498:4050..41431622815604.8960242-CDS-L-elsbetiae_contig1498:4050..4143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 4051..4143 +
1691682986.3292608-CDS-L-elsbetiae_contig1498:4050..41431691682986.3292608-CDS-L-elsbetiae_contig1498:4050..4143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 4051..4143 +
1622815604.9097137-CDS-L-elsbetiae_contig1498:4509..46851622815604.9097137-CDS-L-elsbetiae_contig1498:4509..4685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 4510..4685 +
1691682986.3467114-CDS-L-elsbetiae_contig1498:4509..46851691682986.3467114-CDS-L-elsbetiae_contig1498:4509..4685Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 4510..4685 +
1622815604.9265864-CDS-L-elsbetiae_contig1498:5949..78311622815604.9265864-CDS-L-elsbetiae_contig1498:5949..7831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 5950..7831 +
1691682986.3596542-CDS-L-elsbetiae_contig1498:5949..78311691682986.3596542-CDS-L-elsbetiae_contig1498:5949..7831Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1498 5950..7831 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1498.3568.1prot_L-elsbetiae_contig1498.3568.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1498 1091..7831 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1498.3568.1

>prot_L-elsbetiae_contig1498.3568.1 ID=prot_L-elsbetiae_contig1498.3568.1|Name=mRNA_L-elsbetiae_contig1498.3568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=796bp
MKARVEREIAGAKSRKSLKRKLREETSRSAQLERRLTDSEEELQRLRQEF
DTEKCASEERWRSTLEQAVTAARKAERAKASGKVEALTVKRMRSLSLEVA
ELKEKHESLQVENANLLATLRSRPPRRPAATSSFERRAEKELCRLSAATA
AEESESGRASSGSAGTSSGRHDGPGLADIVSGLADRIRSSFSERASDARS
PRRFTGRRFYSDEEDHGGIDDGDYGSADYASAGLSPSLPLPEPMWQRRMQ
REQQQAWAAQRRERGSATATGEEKPRAKRDSYRSANGEVDVPRIGAAAAA
AAAAAEAAAAAGDSARPSLGREDTRRGSSSSSSSSSSRRRGLASLGSLYL
DAADAVGSSVHNPARGWVASEDGGDTVPAKPTPGVETLKGSSRRKHQRPL
GGGGGGETVAGSNAPSLHALLASGEFYPAGRDIAARRASTGNSSRYTGNK
GLTGLEGRRAAGKRSDRRDDQNMRELKDGPGGRDSAVAAAVTTTANDEGK
QVPSARLHRTLSSFRWSGGRGTVELRDHNNISSRFAESGEGWVTGDNPGA
VNESDNSRVEKDEDEQEEEEEEEGGRAWVEAAAREDVAGMTPTRVGREDD
AGGVAAGIARAEEAYLAQDNNDDDGLTTAKDVAARQGDAVGVFSQCVGQK
IGRSRSARAADTCGGGVHGTCRDSAPPRGTLLESAAARSEGSLLCSTFSA
GVGGGADASGKGRGDGKNGKLLDDLFPPTTGSSARVVGVVTGEDGGKQRP
ALDDLLREMAVAMPVEVPGEGDNAGGSDVAPLSHRRADFMGAVLA*
back to top

mRNA from alignment at L-elsbetiae_contig1498:536..8347+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1498.3568.1 ID=mRNA_L-elsbetiae_contig1498.3568.1|Name=mRNA_L-elsbetiae_contig1498.3568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7812bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:536..8347+ (Laminarionema elsbetiae ELsaHSoW15)
TGTGTCTCCGTACGTGTTCCACACCCACGCCCCACGGGTGTTCTCCGAGA TCTCCGAGGCCCTGCGGAGAGCCCAGGAGGCCAGCGCAGACGTGGTAGCC CGGCTCGAGGCTTCGAAAAGGGCACAGGTCAGGTGTGGTGTGGTCAAGGG AAAGGAAGGGTAGGGGAGGTAAGAGGCGGAAAGGAAGGTTCGTTGAGTGG TGTATCGGCGTGTTCGCAGTATACGTGCCTGGGCTACATATGCATGTGGC ACACTCCTGTGTGGGGTACGCAGCACGCACATGCCGCGCGGGGGGGCGGG CTCTCGGAGGGGGCGAGCGGCGAGCAAGCCATGATGCCAAGGACAGCCGC TGATTTCTGGAAGGTTGCGTCGCAGCTTCTTGCGAGATAATCGCTGGGGT TTTCACGAGGGAGCTCTTGTTGCTGCTGTTGTTGTTGTTGTTGTTGATGA TGATGTTATTTGTCATGCCCGTCCGTCTTGCAGGAGCAAGAGCGAAGCCT GCGAGCGTGCGAGGCTAGGCAATACGTGGCCCGGCTTCGGGAGCTGCAAG CGCTCATGAAGGCACGGGTGGAGAGGGAGATCGCCGGGGCCAAGTCCAGG AAGTCCCTCAAGCGGTATGTATGTAGAAGTGCATACATATGAACTTCAAG TTTTTTTTTTTTTTTTTTTCCCACTCTTGGCTTATTCGTTGTCTGCCCCA CTGGCCCCCTTCCTCCACTACGACTAGCTAGACAACCCGACCGGGGTCAC ACGGGAGTACCTGCCTATGTATAGGTACATATTATGTGGTGCACTACTAT GGTCAAGCGTAGCGAGTGGGTTGGCCGGCCTTTGTTTTTTTGTTTTTTTT CCGCTTGCGAGAGCGTCCATGCACGCCCCGCCGTCGAGCGGGGTGGACCC TGTCATATTTTTCTTTCCGCCTGCAAGGGCTTCCACGCAAGCCGAGCCGA GAGCGTGTTCGTGACACGTGTGTGCAAAAGTCTACCGGGGAAGGTGACGC AAAATACCACCCCCCCCTGGATAGGTTTTCAAAGCTCGATTCCTCCCCAG CAACAAGAGTGCCAGTGTCGAAAAGGGAGATGACATTGGAATGGTCTAGT CGAGGGCTTGTCCGAAACTGTGTCGTTTGGTGCTGGCACCCTCTTGGCTA CGGAGTGATGAGGCTCTAAAAGTCGGTCCAGGAGGTGTTGTACCTTGTGT CGCCTAAGTACGATAGCCTTGTGAGCAAGGAATGGGTGGGGTTGTCGAGG TTATTGCAGTGCGGCATGTTGGTTCTTTGCTAGAGAGAGCAACTCAACTG TTGTACGTGAACACACACACAGAGAGAGAGGGAGAGAGAGAGAGAAAGAA AGAGAGAGATAGGGAGAGGCAGAGGGAGATAAAAAAGTAAAAAGAGGGTC TGCTGGGTGCGAACGAGGAGGCGTGTTCTTACTCGACCCCAGGACCTTCA CTTCCCTCGGATTCTCGGGCGCCCGCTCGATCCGCCGTGCCAGCGTTGCC AAACGCGGGACGATTCTTGCCTCCTTTCGAGGCTTCTCTCCGAGCCAGCC GCGCAGCAGCAACAGCGAGGAAGATTTCGGGCTCGGGCAACACCAACCTC TCTGTCTTGTTTATTATGTTTACCGTAGGTGACACAAGATACCACACCCC CTGGACATATTTTCCAAGCTCGATTCCTCCCCAGCAAGAAGAGTGCTAGT GCCGAACGGGGTGGCGTTGGAAATATCTAGTCCGGGGCTGTCCGAAAATG TACCGTTTGGTGCCGGCATCCTCTTCGTTACGGAGTAATGGAGCTCTCAA ATTCGATCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTAGGGTGGAGA CCCCCCCCCCCCGCCCCTCCCCAACGCTCGCCATCGCCCAGCGCTCGCCA TAGCTCATTTTCTGCGGTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGATG TTTTCGCGTACCTTGCGCTCACTCCCTCCCTTGCAGGAAGCTGAGAGAGG AGACCTCGCGGTCTGCTCAGCTGGAGAGGCGGCTGACTGACTCAGAAGAA GAACTGCAGCGCCTCCGGCAGGTAAATATGGATGTGGTGGATGCTTGTAG ATGGAGGGAATGGCTTCTAGGGAAATGGCACACCGGCGTGCCCGCGCGTG CGCGTGATTCTGTTTGTATTGCTGTATGCATCCAACCGAGGCGTCATGTC TCTGCGCAGAGCGACTACCGTAGGTGACACAAGATACCACACCCCCTGGA CAAATTTTCGAAGCCCGATTCCTCCCCAGCAAGAAGGGTGCCAGTGCCGA AAGGGGTGGCGTTGGAAAGATCTAGTCGAAAGCTGTCCGAAAATGTGTTG TTTAGTGCTAGCACCCTCTTCGTTACGGGATAATGGAGCTTTAAAGTTCT ATCCAGGGGGTGTGGTATCTTGTGTCACCTACGGTACACATATGCGTCAA CCCGAAATATTGGGCACTGAAAAATATCCAGGCCCCATATAGCCGAGTGC AGCCCGGCGGGTGCGTGCTGGCGTTTTCTGTAACCTGCGCTGAGGAACAG TTCGATCTGGGTTCCTCTCACTTGCCAACCATGGTCTCCAACAGTTGCAC GCAGAGCCAAATTTAATTAATCCATACAAATCCCAAGTCCATAAGCATTT TCCGACTCTTAGGAGACGATATAAATAAAAGAGCTTCTCCGGAAACTGGC AGGTTAAAGCGCGAGCGCCCTTGTTTTATTTTTTATATTTTATTTTTTAT ATTTTCTTCTGGCTACTGGGTACGAGCGTCAACGATGCTTCGCACCGACC CTGTGCATGTACTCCATGTGTGCTTCTTCTGTGGACGCTGTTTATACACT TAGGTACTCGGTTCGTGTCATACACCGCTGCTGCTGCTGCTGCTGCCACC GCGCTCGCTGCGACCGACTCCCTGGTTTTATTTTATCGACACCGAAATGC TTTCGTTTTTCTCGCTCTCGATTTGTTTTGTATCGTTCTCCAGGAGTTCG ACACGGAAAAATGCGCATCGGAGGAGCGGTGGCGCTCCACTCTCGAGCAG GCGGTTACCGCGGCCCGTAAGGCCGAGCGGGCAAAGGTACCCAGTCAAAT CTACGTTTGCGTATATTCAAGGAATATCATGTATTTTTCTTCCGCGGGGT CGAGTGTGCCTTGTTTTGTGACCACGGGCCCCCAAGGATGTGTTGGACTA TTTTGAGAGCTAATGTGATAATCAACAACAACAACATGAAGGGGCAAATA TATATGAACTCCCGGTGTGGGAAAGCTTGTGCCTTCGACACGGAGATGGT TCGGTGTGCGAGAAGAAGGCGGCTACTTTGGTCTTGGTTTAGGTTTTCGA AAGAGGGGGAAGGTGCGCGCTTGCAAAAAAAAAAACGGACTGCGAAAAAA AGACCGACAACGGCCGGCAAAAGGAGACATAAACACAGACGATACACATG TTGATGTGCCCCCCCCCCCCCCCCCCCGACATGTCTTTTTTACATCATCA ACTGTTGGGTTCCAGGCGAGCGGGAAGGTTGAGGCGTTGACCGTGAAGAG GATGCGGTCCCTGTCTCTCGAGGTGGCAGAGCTCAAAGAAAAGCATGAAT CCTTGCAGGTACTGTGCGTTTGTTTCTTGGGTGTGGTTGTGTTGATATCG TTGCGGCGGCGGCTGCTGCTGCTGCTGCTGGATGTTTGCTGTTGTTGTCG TCGATGGCACGAGATACCCGCACGGCCCTTGCACCACCGCCATCGGTACG GTACCGCAGAGAACAAGCCGGCGTGCTCCCCTTCCCTCCCTAACCAACCC AGCAACAACCAACCAAGATGGAGAGGGGAAGATTTAGATTTTCGCTGATC ATTAAGAAGTCTGCCATTCGTCCCGCTGTCGCCGTGCCCACGGGCCCGGA CCGTTCCGTCCATGCAGCCAGTGCTTCCTACCGCTGCGGCACCCCACTCA CCCCGTGCCTACCTGAAACATCAGGTGGAAAATGCCAATCTTCTGGCAAC CCTTCGCTCCCGCCCCCCTCGTCGTCCCGCGGCGACCTCTTCGTTCGAAC GGCGAGCCGAAAAGGAGCTTTGTCGGCTGTCGGCCGCCACCGCCGCGGAG GAGTCGGAGTCAGGGCGGGCCTCATCGGGCTCTGCGGGAACGTCCTCGGG GTGCGCAGCCTTGGTTTTTTCGTCGCTGTTTTGGGGCTCTTCCGTCGTTC CTGTTTTTTTCCTCTTTCCTTTCCGCTTTTTCCCACTAAATACATACCTG CTCGTTGTTGTTTGCTGTTGTTTTATTTTATTTATTTTTTTCTTGAGGGT GCTCACACGTTCACCAGCGCTCGGACGAGGGTCCGAGCAAGTTTAGAAGG AGCGACATCACGGCGGGCCCTACCCGCCTGAATAATTGTTGGCCGACCTC GCAAATCTTAAATCTTTGCAGGGGAGATGTTGAACTCTTCTGATATTTAG GTTGTTTTTCTGCTCGCTTCGCCAAATATTACGTCTCTGTATGGAATACG TTTGAACCCCACATCGAGTCCTTGCTCTAGTGTGGGGTAGGTTCCATCTT TGATTCATTGTTTATTTTTAGGAGGAGCGCACCATTTCGGTCGCTTGCGT AGGTAACCCCTGTGGTACCTATTTGTTTTCTTTCTACCAGTGTTCTTCGT CCTTTTTTTTTTCGTTCTTCTTCACGTTTATTTCCAGTGCTCGATGGTCT CCCTTCCATGTCACGAGGACATCTTGCGAGAGTACTGAACCGTGGTCACA CAGAAAGGTTCCTTTCCCCAAGGCCCACACTTACCCTGGGCATAATGTAG GTGGAGCAGTGAAGCTGTTTTTGCTTTTTCTGGCTCGGAACACCACCTAT GTGTGCGTGCACCCAGCCCGGCGCCCTGATGAGGTACCCCTCGCGATCGG AACCAAGGACGTCGCACTTCCCGTGAAACCCGGGTGGGCGCGTTGCATCA TACTCACGACACAAGCGAAGGCGACGTAAGTCACCGCCACGGAGTATAGT TTTGATTCTCAACGCTGTTATTTAGCGGCACGATTATCGCCTCCGTTTCC CCGTGCACAGCGCGTTGGCTCGGGCTTTCATACGTACCATTTTTTTCAAC GCCGTTAACAGCACGATTACTTCCTCCGTTTCCCCGTGCACAGCGCGTTG GCTCGGGCTTTCATACGTGCCCCCGCGCCTCTTGGAACGACTGCGTGCAT TCGAGGGGGGCCTCAACGCCCGTCCGCCAAAGGCCCTGTTTTCTCCTCCT CCTCCTCCGAGTGTGTGGTGTTTTTGTTTTATTTTGCCTAGTTCAGTTTC TGCCTTTCTGTGTGCTTCCACTTGGTTCGAGCCCGAGCCGCAACGAATGA TCTCTTCGTTAGTTCATCTCCGTCACCTCCGTCTATGACTTTATCTCTCT TTTGTCTGTTACAGGAGGCACGATGGACCGGGGTTGGCCGACATCGTCTC GGGCCTTGCGGACCGGATAAGGTCATCCTTCTCGGAACGTGCTTCTGATG CCCGGTCCCCGCGGCGGTTTACGGGGCGGCGCTTTTACAGCGACGAGGAA GACCACGGTGGTATCGACGATGGTGATTACGGTAGTGCTGACTATGCCAG TGCTGGCTTGTCCCCCTCGCTCCCTCTACCTGAGCCGATGTGGCAACGGC GGATGCAGCGGGAGCAGCAGCAAGCGTGGGCGGCGCAAAGGAGAGAGAGA GGAAGCGCTACAGCGACCGGCGAGGAGAAACCACGGGCGAAACGGGATTC GTATCGATCTGCCAACGGCGAGGTCGACGTCCCTCGTATAGGAGCCGCGG CAGCGGCAGCAGCAGCAGCGGCAGAGGCAGCAGCAGCAGCAGGAGATTCT GCCAGGCCATCTTTAGGCAGAGAGGACACTCGTAGGGGCAGCAGCAGCAG CAGCAGTAGCAGTAGCAGCAGGAGGCGGGGGCTAGCTTCGCTTGGGAGTC TCTACTTGGATGCTGCTGATGCTGTTGGAAGTTCTGTGCACAATCCTGCG CGCGGGTGGGTAGCCTCGGAGGACGGGGGGGATACGGTACCAGCGAAGCC GACGCCGGGAGTGGAGACTTTGAAGGGCAGCAGCCGGCGGAAGCACCAGC GCCCGCTTGGCGGCGGCGGCGGCGGAGAAACCGTTGCCGGTTCAAACGCT CCCTCGCTCCATGCGCTGCTTGCGTCGGGCGAGTTTTATCCTGCGGGAAG GGACATCGCTGCAAGACGTGCCAGCACCGGCAACAGCAGCCGCTACACTG GGAACAAAGGATTAACTGGCCTTGAAGGAAGGAGGGCAGCCGGAAAGCGA TCGGACAGGAGAGATGACCAGAACATGCGAGAGCTAAAAGACGGCCCTGG CGGAAGAGATTCGGCAGTGGCAGCGGCAGTGACGACGACGGCGAACGATG AAGGGAAGCAGGTGCCGTCGGCGAGGCTGCACCGGACATTGTCTTCCTTC CGCTGGAGTGGTGGTCGAGGCACGGTGGAGCTGCGGGACCACAACAACAT TTCGTCCCGGTTTGCCGAGAGTGGCGAGGGATGGGTCACCGGAGACAACC CGGGTGCGGTCAACGAGAGCGATAATTCGAGGGTGGAGAAGGACGAGGAC GAACAAGAGGAGGAAGAGGAGGAGGAGGGGGGGCGCGCTTGGGTAGAGGC GGCCGCTCGAGAGGATGTTGCCGGGATGACGCCCACACGTGTGGGTCGTG AAGATGATGCTGGTGGCGTTGCAGCCGGAATCGCCCGAGCAGAGGAGGCG TATCTCGCGCAGGATAATAACGATGATGACGGCCTTACCACCGCCAAGGA TGTTGCCGCCCGGCAAGGCGACGCCGTGGGTGTATTCTCTCAGTGCGTAG GCCAGAAGATCGGCCGCAGCAGAAGCGCCCGCGCCGCGGACACTTGCGGA GGCGGGGTGCACGGCACCTGTCGAGACTCAGCCCCCCCAAGAGGGACTCT GCTAGAGTCCGCCGCCGCGCGATCGGAGGGCTCGCTCCTCTGCTCGACGT TTTCGGCCGGGGTTGGCGGTGGCGCAGATGCTTCCGGCAAGGGGAGAGGA GACGGAAAGAACGGGAAACTCCTGGACGATTTGTTTCCTCCGACCACGGG CTCCAGCGCCAGGGTCGTGGGGGTCGTGACCGGTGAAGACGGAGGGAAAC AGCGCCCGGCCCTGGACGATTTGCTACGCGAAATGGCGGTGGCGATGCCT GTCGAGGTTCCTGGGGAAGGAGACAATGCGGGTGGCAGCGATGTTGCTCC GCTGTCCCATCGTCGTGCAGACTTCATGGGCGCGGTACTGGCGTAGCGGT GGTGTCGTGCCTGCTGTGTTAGAGAGCACTCTTGAATCGTATCGCTTCCC ATGCGAGGGTGAATTCGACGGTTTCGGGGCGACCAAGCGGTCTAGGTCAG ACGTTGTGCTGCGACGAACGCTAGAATGTATTCAGGACACACACCTGTGC GTACAGTAGATCTCGGTAACGCGTTTTTAGGCAGATACAGAGACAGTACG GTAAGACCTTGGCGGTATAATAGACGGTTTTCCCAAAATGTGGCGGTAAA AAGCCATCCACGCCGGCGGTAATTTCACGACGGTTTCACAACGGTAAAAT TACCGAGGACTTGAGGACTAGATAAGTACCCTGCAAATTTTGATGTGGTT TGAGTGTTTCGGCCCAAGACTAAGTGGCCTACGAGGTTTAATGTGGCAAT AATCCTTGTGTATTCGATCATTTTGAGTTGAACAAACGGGGTGAACTGGT GACATGCATGAAGTGCAGCACTACTACGTCTAGACTAATCATCAAATAAA CGTAGACACACC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1498:536..8347+

>mRNA_L-elsbetiae_contig1498.3568.1 ID=mRNA_L-elsbetiae_contig1498.3568.1|Name=mRNA_L-elsbetiae_contig1498.3568.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4776bp|location=Sequence derived from alignment at L-elsbetiae_contig1498:536..8347+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGCACGGGTGGAGAGGGAGATCGCCGGGGCCAAGTCCAGGAAGTC
CCTCAAGCGATGAAGGCACGGGTGGAGAGGGAGATCGCCGGGGCCAAGTC
CAGGAAGTCCCTCAAGCGGAAGCTGAGAGAGGAGACCTCGCGGTCTGCTC
AGCTGGAGAGGCGGCTGACTGACTCAGAAGAAGAACTGCAGCGCCTCCGG
CAGGAAGCTGAGAGAGGAGACCTCGCGGTCTGCTCAGCTGGAGAGGCGGC
TGACTGACTCAGAAGAAGAACTGCAGCGCCTCCGGCAGGAGTTCGACACG
GAAAAATGCGCATCGGAGGAGCGGTGGCGCTCCACTCTCGAGCAGGCGGT
TACCGCGGCCCGTAAGGCCGAGCGGGCAAAGGAGTTCGACACGGAAAAAT
GCGCATCGGAGGAGCGGTGGCGCTCCACTCTCGAGCAGGCGGTTACCGCG
GCCCGTAAGGCCGAGCGGGCAAAGGCGAGCGGGAAGGTTGAGGCGTTGAC
CGTGAAGAGGATGCGGTCCCTGTCTCTCGAGGTGGCAGAGCTCAAAGAAA
AGCATGAATCCTTGCAGGCGAGCGGGAAGGTTGAGGCGTTGACCGTGAAG
AGGATGCGGTCCCTGTCTCTCGAGGTGGCAGAGCTCAAAGAAAAGCATGA
ATCCTTGCAGGTGGAAAATGCCAATCTTCTGGCAACCCTTCGCTCCCGCC
CCCCTCGTCGTCCCGCGGCGACCTCTTCGTTCGAACGGCGAGCCGAAAAG
GAGCTTTGTCGGCTGTCGGCCGCCACCGCCGCGGAGGAGTCGGAGTCAGG
GCGGGCCTCATCGGGCTCTGCGGGAACGTCCTCGGGGTGGAAAATGCCAA
TCTTCTGGCAACCCTTCGCTCCCGCCCCCCTCGTCGTCCCGCGGCGACCT
CTTCGTTCGAACGGCGAGCCGAAAAGGAGCTTTGTCGGCTGTCGGCCGCC
ACCGCCGCGGAGGAGTCGGAGTCAGGGCGGGCCTCATCGGGCTCTGCGGG
AACGTCCTCGGGGAGGCACGATGGACCGGGGTTGGCCGACATCGTCTCGG
GCCTTGCGGACCGGATAAGGTCATCCTTCTCGGAACGTGCTTCTGATGCC
CGGTCCCCGCGGCGGTTTACGGGGCGGCGCTTTTACAGCGACGAGGAAGA
CCACGGTGGTATCGACGATGGTGATTACGGTAGTGCTGACTATGCCAGTG
CTGGCTTGTCCCCCTCGCTCCCTCTACCTGAGCCGATGTGGCAACGGCGG
ATGCAGCGGGAGCAGCAGCAAGCGTGGGCGGCGCAAAGGAGAGAGAGAGG
AAGCGCTACAGCGACCGGCGAGGAGAAACCACGGGCGAAACGGGATTCGT
ATCGATCTGCCAACGGCGAGGTCGACGTCCCTCGTATAGGAGCCGCGGCA
GCGGCAGCAGCAGCAGCGGCAGAGGCAGCAGCAGCAGCAGGAGATTCTGC
CAGGCCATCTTTAGGCAGAGAGGACACTCGTAGGGGCAGCAGCAGCAGCA
GCAGTAGCAGTAGCAGCAGGAGGCGGGGGCTAGCTTCGCTTGGGAGTCTC
TACTTGGATGCTGCTGATGCTGTTGGAAGTTCTGTGCACAATCCTGCGCG
CGGGTGGGTAGCCTCGGAGGACGGGGGGGATACGGTACCAGCGAAGCCGA
CGCCGGGAGTGGAGACTTTGAAGGGCAGCAGCCGGCGGAAGCACCAGCGC
CCGCTTGGCGGCGGCGGCGGCGGAGAAACCGTTGCCGGTTCAAACGCTCC
CTCGCTCCATGCGCTGCTTGCGTCGGGCGAGTTTTATCCTGCGGGAAGGG
ACATCGCTGCAAGACGTGCCAGCACCGGCAACAGCAGCCGCTACACTGGG
AACAAAGGATTAACTGGCCTTGAAGGAAGGAGGGCAGCCGGAAAGCGATC
GGACAGGAGAGATGACCAGAACATGCGAGAGCTAAAAGACGGCCCTGGCG
GAAGAGATTCGGCAGTGGCAGCGGCAGTGACGACGACGGCGAACGATGAA
GGGAAGCAGGTGCCGTCGGCGAGGCTGCACCGGACATTGTCTTCCTTCCG
CTGGAGTGGTGGTCGAGGCACGGTGGAGCTGCGGGACCACAACAACATTT
CGTCCCGGTTTGCCGAGAGTGGCGAGGGATGGGTCACCGGAGACAACCCG
GGTGCGGTCAACGAGAGCGATAATTCGAGGGTGGAGAAGGACGAGGACGA
ACAAGAGGAGGAAGAGGAGGAGGAGGGGGGGCGCGCTTGGGTAGAGGCGG
CCGCTCGAGAGGATGTTGCCGGGATGACGCCCACACGTGTGGGTCGTGAA
GATGATGCTGGTGGCGTTGCAGCCGGAATCGCCCGAGCAGAGGAGGCGTA
TCTCGCGCAGGATAATAACGATGATGACGGCCTTACCACCGCCAAGGATG
TTGCCGCCCGGCAAGGCGACGCCGTGGGTGTATTCTCTCAGTGCGTAGGC
CAGAAGATCGGCCGCAGCAGAAGCGCCCGCGCCGCGGACACTTGCGGAGG
CGGGGTGCACGGCACCTGTCGAGACTCAGCCCCCCCAAGAGGGACTCTGC
TAGAGTCCGCCGCCGCGCGATCGGAGGGCTCGCTCCTCTGCTCGACGTTT
TCGGCCGGGGTTGGCGGTGGCGCAGATGCTTCCGGCAAGGGGAGAGGAGA
CGGAAAGAACGGGAAACTCCTGGACGATTTGTTTCCTCCGACCACGGGCT
CCAGCGCCAGGGTCGTGGGGGTCGTGACCGGTGAAGACGGAGGGAAACAG
CGCCCGGCCCTGGACGATTTGCTACGCGAAATGGCGGTGGCGATGCCTGT
CGAGGTTCCTGGGGAAGGAGACAATGCGGGTGGCAGCGATGTTGCTCCGC
TGTCCCATCGTCGTGCAGACTTCATGGGCGCGGTACTGGCGTAGGAGGCA
CGATGGACCGGGGTTGGCCGACATCGTCTCGGGCCTTGCGGACCGGATAA
GGTCATCCTTCTCGGAACGTGCTTCTGATGCCCGGTCCCCGCGGCGGTTT
ACGGGGCGGCGCTTTTACAGCGACGAGGAAGACCACGGTGGTATCGACGA
TGGTGATTACGGTAGTGCTGACTATGCCAGTGCTGGCTTGTCCCCCTCGC
TCCCTCTACCTGAGCCGATGTGGCAACGGCGGATGCAGCGGGAGCAGCAG
CAAGCGTGGGCGGCGCAAAGGAGAGAGAGAGGAAGCGCTACAGCGACCGG
CGAGGAGAAACCACGGGCGAAACGGGATTCGTATCGATCTGCCAACGGCG
AGGTCGACGTCCCTCGTATAGGAGCCGCGGCAGCGGCAGCAGCAGCAGCG
GCAGAGGCAGCAGCAGCAGCAGGAGATTCTGCCAGGCCATCTTTAGGCAG
AGAGGACACTCGTAGGGGCAGCAGCAGCAGCAGCAGTAGCAGTAGCAGCA
GGAGGCGGGGGCTAGCTTCGCTTGGGAGTCTCTACTTGGATGCTGCTGAT
GCTGTTGGAAGTTCTGTGCACAATCCTGCGCGCGGGTGGGTAGCCTCGGA
GGACGGGGGGGATACGGTACCAGCGAAGCCGACGCCGGGAGTGGAGACTT
TGAAGGGCAGCAGCCGGCGGAAGCACCAGCGCCCGCTTGGCGGCGGCGGC
GGCGGAGAAACCGTTGCCGGTTCAAACGCTCCCTCGCTCCATGCGCTGCT
TGCGTCGGGCGAGTTTTATCCTGCGGGAAGGGACATCGCTGCAAGACGTG
CCAGCACCGGCAACAGCAGCCGCTACACTGGGAACAAAGGATTAACTGGC
CTTGAAGGAAGGAGGGCAGCCGGAAAGCGATCGGACAGGAGAGATGACCA
GAACATGCGAGAGCTAAAAGACGGCCCTGGCGGAAGAGATTCGGCAGTGG
CAGCGGCAGTGACGACGACGGCGAACGATGAAGGGAAGCAGGTGCCGTCG
GCGAGGCTGCACCGGACATTGTCTTCCTTCCGCTGGAGTGGTGGTCGAGG
CACGGTGGAGCTGCGGGACCACAACAACATTTCGTCCCGGTTTGCCGAGA
GTGGCGAGGGATGGGTCACCGGAGACAACCCGGGTGCGGTCAACGAGAGC
GATAATTCGAGGGTGGAGAAGGACGAGGACGAACAAGAGGAGGAAGAGGA
GGAGGAGGGGGGGCGCGCTTGGGTAGAGGCGGCCGCTCGAGAGGATGTTG
CCGGGATGACGCCCACACGTGTGGGTCGTGAAGATGATGCTGGTGGCGTT
GCAGCCGGAATCGCCCGAGCAGAGGAGGCGTATCTCGCGCAGGATAATAA
CGATGATGACGGCCTTACCACCGCCAAGGATGTTGCCGCCCGGCAAGGCG
ACGCCGTGGGTGTATTCTCTCAGTGCGTAGGCCAGAAGATCGGCCGCAGC
AGAAGCGCCCGCGCCGCGGACACTTGCGGAGGCGGGGTGCACGGCACCTG
TCGAGACTCAGCCCCCCCAAGAGGGACTCTGCTAGAGTCCGCCGCCGCGC
GATCGGAGGGCTCGCTCCTCTGCTCGACGTTTTCGGCCGGGGTTGGCGGT
GGCGCAGATGCTTCCGGCAAGGGGAGAGGAGACGGAAAGAACGGGAAACT
CCTGGACGATTTGTTTCCTCCGACCACGGGCTCCAGCGCCAGGGTCGTGG
GGGTCGTGACCGGTGAAGACGGAGGGAAACAGCGCCCGGCCCTGGACGAT
TTGCTACGCGAAATGGCGGTGGCGATGCCTGTCGAGGTTCCTGGGGAAGG
AGACAATGCGGGTGGCAGCGATGTTGCTCCGCTGTCCCATCGTCGTGCAG
ACTTCATGGGCGCGGTACTGGCGTAG
back to top