mRNA_L-elsbetiae_contig14977.3567.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14977.3567.1
Unique NamemRNA_L-elsbetiae_contig14977.3567.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A6H5JR39_9PHAE (ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JR39_9PHAE)

HSP 1 Score: 169 bits (429), Expect = 4.320e-47
Identity = 77/95 (81.05%), Postives = 89/95 (93.68%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKILAD 285
            +F  + LV +R+KGN +PFGGIQLVLCGDFFQLPP+GIGRGST+FCF+A+TWDTS+DQSIVLKQVFRQKDPFFLKILHEMREGRVS EAE++LAD
Sbjct:  289 LFDKLNLVGQRVKGNGQPFGGIQLVLCGDFFQLPPVGIGRGSTRFCFEARTWDTSIDQSIVLKQVFRQKDPFFLKILHEMREGRVSSEAEQVLAD 383          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A0D2AM31_9PEZI (ATP-dependent DNA helicase PIF1 n=1 Tax=Verruconis gallopava TaxID=253628 RepID=A0A0D2AM31_9PEZI)

HSP 1 Score: 108 bits (271), Expect = 1.280e-25
Identity = 49/89 (55.06%), Postives = 64/89 (71.91%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEA 267
            +F  +  V R ++ N RPFGGIQLV+ GDFFQLPP+  G  + +F F+A TW TS+D +I L  VFRQKDP F  +L+EMREGR+ PE+
Sbjct:  759 LFDKLEEVARILRNNGRPFGGIQLVITGDFFQLPPVPEGNRAARFAFEAATWSTSIDHTIALHHVFRQKDPVFAGMLNEMREGRLRPES 847          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: C5FMN5_ARTOC (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FMN5_ARTOC)

HSP 1 Score: 107 bits (266), Expect = 5.930e-25
Identity = 50/88 (56.82%), Postives = 63/88 (71.59%), Query Frame = 1
Query:    4 FGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEA 267
            F  +  + R+++GN RPFGGIQLV  GDFFQLPP+  G    KF F A TW+TS+  +I+L QVFRQKDP F  +L+EMR GR+SP A
Sbjct:  375 FDKLEELARKIRGNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAATWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSA 462          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: UPI000711D652 (ATP-dependent DNA helicase n=1 Tax=Blastocystis sp. subtype 4 TaxID=944170 RepID=UPI000711D652)

HSP 1 Score: 106 bits (264), Expect = 1.120e-24
Identity = 44/95 (46.32%), Postives = 70/95 (73.68%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKILAD 285
            +F ++  V R ++GN  PFGGIQ+VLCGDFFQLPP+G+GR   +FCF+++ W+  +++ +V+  VFRQKD    ++L E+R GR+SP++ K + +
Sbjct:  199 LFDTLEYVARVIRGNDYPFGGIQIVLCGDFFQLPPVGLGRNGVQFCFESRWWNIVVEKVLVMTTVFRQKDMQLQQLLREIRYGRLSPQSMKTMKE 293          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: E4V3W1_ARTGP (ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderma gypseum (strain ATCC MYA-4604 / CBS 118893) TaxID=535722 RepID=E4V3W1_ARTGP)

HSP 1 Score: 105 bits (261), Expect = 2.800e-24
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:    4 FGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKILAD 285
            F  +  + R+++ N RPFGGIQLV  GDFFQLPP+  G    KF F A TW+TS+  +I+L QVFRQKDP F  +L+EMR GR+SP A +   D
Sbjct:  374 FDKLEELARKIRNNGRPFGGIQLVTTGDFFQLPPVPEGGKEAKFAFAAGTWNTSIQHTILLTQVFRQKDPDFANMLNEMRLGRLSPSAIQAFKD 467          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A5N5SV06_9CRUS (ATP-dependent DNA helicase n=3 Tax=Armadillidium TaxID=13346 RepID=A0A5N5SV06_9CRUS)

HSP 1 Score: 103 bits (257), Expect = 3.070e-24
Identity = 46/94 (48.94%), Postives = 61/94 (64.89%), Query Frame = 1
Query:    4 FGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKILAD 285
            F  +  V R + GN +PFGGIQL+LCGDF QLPP+        FCFQ   WD  ++ +I L QV RQ DP F++IL  +R GR +P+ EK+LA+
Sbjct:   91 FEKMEAVARNILGNDKPFGGIQLILCGDFLQLPPVSTKGAKKSFCFQTSAWDKCINTNIELLQVKRQNDPLFIEILQNIRIGRCNPDHEKVLAE 184          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A5N5DV80_9PEZI (ATP-dependent DNA helicase n=1 Tax=Lasiodiplodia theobromae TaxID=45133 RepID=A0A5N5DV80_9PEZI)

HSP 1 Score: 103 bits (258), Expect = 4.620e-24
Identity = 46/89 (51.69%), Postives = 68/89 (76.40%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPI--GIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSP 261
            +F  + ++ R ++ N++PFGGIQLVL GDFFQLPP+  G   GS +FCF+A++W T+++ +I L Q++RQKDP F  +L+EMREG V+P
Sbjct:   99 LFDKLDIIARIVRRNNKPFGGIQLVLTGDFFQLPPVLEGPDDGSPRFCFEAESWKTAIEHTIGLTQIYRQKDPAFAGMLNEMREGLVTP 187          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A0F4GSW0_9PEZI (ATP-dependent DNA helicase PIF1 n=4 Tax=Zymoseptoria TaxID=1047167 RepID=A0A0F4GSW0_9PEZI)

HSP 1 Score: 104 bits (259), Expect = 5.270e-24
Identity = 46/86 (53.49%), Postives = 63/86 (73.26%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVS 258
            +F  +  + R+++ N+RPFGGIQLV+ GDFFQLPP+  G  + KF F A TW TS++ +I L  VFRQKDP F  +L+EMREGR++
Sbjct:  497 LFDKLEAIARQIRNNARPFGGIQLVITGDFFQLPPVPEGGRAAKFAFDASTWSTSIEHTIGLHHVFRQKDPVFAGMLNEMREGRLT 582          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A7S0Q3F8_9EUKA (ATP-dependent DNA helicase (Fragment) n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0Q3F8_9EUKA)

HSP 1 Score: 96.7 bits (239), Expect = 6.750e-24
Identity = 44/93 (47.31%), Postives = 59/93 (63.44%), Query Frame = 1
Query:    1 VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKIL 279
            +F  +  V R ++ N +PFGG+QLVLCGDFFQLPP+  G  S KF F+AK W+  +  +  L QVFRQ DP F+  L ++R GR  P    +L
Sbjct:   14 LFDLLEQVARIVRNNQKPFGGLQLVLCGDFFQLPPVAKGGASYKFAFEAKAWNNCVTTTFELNQVFRQSDPEFIGALQQIRLGRCPPHVAALL 106          
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Match: A0A507FMG7_9FUNG (ATP-dependent DNA helicase PIF1 n=1 Tax=Chytriomyces confervae TaxID=246404 RepID=A0A507FMG7_9FUNG)

HSP 1 Score: 103 bits (258), Expect = 7.000e-24
Identity = 47/92 (51.09%), Postives = 67/92 (72.83%), Query Frame = 1
Query:    4 FGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAKTWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKIL 279
            F  +  + R ++ + RPFGGIQLV+CGDF QLPP+   RG + F F+AK+W + + ++I+LK+VFRQKDP F++IL+EMR G V+P  E  L
Sbjct:  362 FDKLEEIARMVRDSPRPFGGIQLVICGDFMQLPPVS--RGESHFAFEAKSWKSCMSRTILLKEVFRQKDPVFVQILNEMRNGLVTPATESRL 451          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14977.3567.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JR39_9PHAE4.320e-4781.05ATP-dependent DNA helicase n=2 Tax=Ectocarpus TaxI... [more]
A0A0D2AM31_9PEZI1.280e-2555.06ATP-dependent DNA helicase PIF1 n=1 Tax=Verruconis... [more]
C5FMN5_ARTOC5.930e-2556.82ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderm... [more]
UPI000711D6521.120e-2446.32ATP-dependent DNA helicase n=1 Tax=Blastocystis sp... [more]
E4V3W1_ARTGP2.800e-2453.19ATP-dependent DNA helicase PIF1 n=1 Tax=Arthroderm... [more]
A0A5N5SV06_9CRUS3.070e-2448.94ATP-dependent DNA helicase n=3 Tax=Armadillidium T... [more]
A0A5N5DV80_9PEZI4.620e-2451.69ATP-dependent DNA helicase n=1 Tax=Lasiodiplodia t... [more]
A0A0F4GSW0_9PEZI5.270e-2453.49ATP-dependent DNA helicase PIF1 n=4 Tax=Zymoseptor... [more]
A0A7S0Q3F8_9EUKA6.750e-2447.31ATP-dependent DNA helicase (Fragment) n=1 Tax=Cocc... [more]
A0A507FMG7_9FUNG7.000e-2451.09ATP-dependent DNA helicase PIF1 n=1 Tax=Chytriomyc... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14977contigL-elsbetiae_contig14977:453..1441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score169.5
Seed ortholog evalue7.7e-40
Seed eggNOG ortholog2880.D7G380
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Exons2
Model size285
Cds size285
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.7947576-CDS-L-elsbetiae_contig14977:452..6441622815604.7947576-CDS-L-elsbetiae_contig14977:452..644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14977 453..644 +
1691682986.2520459-CDS-L-elsbetiae_contig14977:452..6441691682986.2520459-CDS-L-elsbetiae_contig14977:452..644Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14977 453..644 +
1622815604.8076963-CDS-L-elsbetiae_contig14977:1348..14411622815604.8076963-CDS-L-elsbetiae_contig14977:1348..1441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14977 1349..1441 +
1691682986.2701342-CDS-L-elsbetiae_contig14977:1348..14411691682986.2701342-CDS-L-elsbetiae_contig14977:1348..1441Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14977 1349..1441 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14977.3567.1prot_L-elsbetiae_contig14977.3567.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14977 453..1441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14977.3567.1

>prot_L-elsbetiae_contig14977.3567.1 ID=prot_L-elsbetiae_contig14977.3567.1|Name=mRNA_L-elsbetiae_contig14977.3567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=95bp
VFGSIGLVLRRMKGNSRPFGGIQLVLCGDFFQLPPIGIGRGSTKFCFQAK
TWDTSLDQSIVLKQVFRQKDPFFLKILHEMREGRVSPEAEKILAD
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mRNA from alignment at L-elsbetiae_contig14977:453..1441+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14977.3567.1 ID=mRNA_L-elsbetiae_contig14977.3567.1|Name=mRNA_L-elsbetiae_contig14977.3567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=989bp|location=Sequence derived from alignment at L-elsbetiae_contig14977:453..1441+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTTCGGGTCGATCGGTTTGGTTCTCCGCAGGATGAAGGGGAACTCGCG GCCCTTCGGGGGCATTCAGCTGGTGCTGTGCGGTGACTTCTTCCAGCTGC CCCCCATCGGCATCGGCAGAGGCTCGACCAAGTTTTGCTTTCAGGCCAAG ACCTGGGACACCTCGCTCGACCAGTCCATCGTGCTCAAGCAGGTGAGCCG CTGCTTGCAGCTCGCGTCCATAGGCAAGCCATGGTGTATAGCTTTTACAC CGGCGGGGTAATAAACCTAGGTTGCAGTTGGAGGTAGACGCGAAAACAAG GCCTACGCTGGGTTTCCGGCCCTCTCGCTACACCACGGCGCTAGGCCTAA CGCACACCCCAACCACCCTAAACCCTAACCTTTAATATATGTATGTAATA CCGGAATCATCGGGTTATCGCACCCCCGTGTTCGGGTTTTTCTAGAGCGT ATTTCTCCACAAAGCGTATTTCTCCACAACCAGGAGGGTACCACTGCCGA AAAGGGTGGTTTTCGAAACGTCTCGTCGGGGGCTTTCCAGAGAGGTATCA GTTAGTGTTCGCACCTTCCTAGTTGTGGAGAAATATGCTTTAGAAAAACG CTAACACGGGGGTCCGATAACCCGCATAATTACGGTACTTTACCCCAGGG CTGGTGTATCGACGCCGCGCGGGTGAGCCGCCCTGTGGGTGGCAGAGCAT GTGTGCTGTTGTTGAGCATATGTGTTGTTGATGTTTATGTTGTTGTTGTT GCTGATTTCTCACATTAGCTCGTACACTGGCAGTTTGATGCTGTCTCCTC CTCTCTCACAACAACGCCTCCTCCTCTCTTACAACGCCGCCTGTCTCGGG TTTGGTTTCCTGTGGTGGTGTCTGCTACTGTTTTTGTTTGGTTCAGGTGT TCAGACAGAAGGACCCTTTCTTCCTCAAGATTCTCCACGAGATGAGAGAG GGGAGGGTAAGCCCGGAGGCGGAGAAAATCCTCGCCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14977:453..1441+

>mRNA_L-elsbetiae_contig14977.3567.1 ID=mRNA_L-elsbetiae_contig14977.3567.1|Name=mRNA_L-elsbetiae_contig14977.3567.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=570bp|location=Sequence derived from alignment at L-elsbetiae_contig14977:453..1441+ (Laminarionema elsbetiae ELsaHSoW15)
GTTTTCGGGTCGATCGGTTTGGTTCTCCGCAGGATGAAGGGGAACTCGCG
GCCCTTCGGGGGCATTCAGCTGGTGCTGTGCGGTGACTTCTTCCAGCTGC
CCCCCATCGGCATCGGCAGAGGCTCGACCAAGTTTTGCTTTCAGGCCAAG
ACCTGGGACACCTCGCTCGACCAGTCCATCGTGCTCAAGCAGGTTTTCGG
GTCGATCGGTTTGGTTCTCCGCAGGATGAAGGGGAACTCGCGGCCCTTCG
GGGGCATTCAGCTGGTGCTGTGCGGTGACTTCTTCCAGCTGCCCCCCATC
GGCATCGGCAGAGGCTCGACCAAGTTTTGCTTTCAGGCCAAGACCTGGGA
CACCTCGCTCGACCAGTCCATCGTGCTCAAGCAGGTGTTCAGACAGAAGG
ACCCTTTCTTCCTCAAGATTCTCCACGAGATGAGAGAGGGGAGGGTAAGC
CCGGAGGCGGAGAAAATCCTCGCCGACGTGTTCAGACAGAAGGACCCTTT
CTTCCTCAAGATTCTCCACGAGATGAGAGAGGGGAGGGTAAGCCCGGAGG
CGGAGAAAATCCTCGCCGAC
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