mRNA_L-elsbetiae_contig1497.3566.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1497.3566.1
Unique NamemRNA_L-elsbetiae_contig1497.3566.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1497.3566.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1497contigL-elsbetiae_contig1497:14652..16614 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1295
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1497.3566.1prot_L-elsbetiae_contig1497.3566.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1497 15091..16406 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.5570445-UTR-L-elsbetiae_contig1497:14651..150901622815604.5570445-UTR-L-elsbetiae_contig1497:14651..15090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1497 14652..15090 -
1691682986.0455637-UTR-L-elsbetiae_contig1497:14651..150901691682986.0455637-UTR-L-elsbetiae_contig1497:14651..15090Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1497 14652..15090 -
1622815604.5897877-UTR-L-elsbetiae_contig1497:16406..166141622815604.5897877-UTR-L-elsbetiae_contig1497:16406..16614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1497 16407..16614 -
1691682986.0867262-UTR-L-elsbetiae_contig1497:16406..166141691682986.0867262-UTR-L-elsbetiae_contig1497:16406..16614Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1497 16407..16614 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.5700836-CDS-L-elsbetiae_contig1497:15090..151551622815604.5700836-CDS-L-elsbetiae_contig1497:15090..15155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1497 15091..15155 -
1691682986.0594552-CDS-L-elsbetiae_contig1497:15090..151551691682986.0594552-CDS-L-elsbetiae_contig1497:15090..15155Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1497 15091..15155 -
1622815604.5800555-CDS-L-elsbetiae_contig1497:15823..164061622815604.5800555-CDS-L-elsbetiae_contig1497:15823..16406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1497 15824..16406 -
1691682986.069769-CDS-L-elsbetiae_contig1497:15823..164061691682986.069769-CDS-L-elsbetiae_contig1497:15823..16406Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1497 15824..16406 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1497.3566.1

>prot_L-elsbetiae_contig1497.3566.1 ID=prot_L-elsbetiae_contig1497.3566.1|Name=mRNA_L-elsbetiae_contig1497.3566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
MDEMVDVKNKICTHHGCTKQPSYGKAGNKAGYCSGHAQNGMVDVKHKRCT
HHGCTKTPSYGEAGGRAGCCQDHAKDGMVRLCGPSSEDSERDGGPDSTGA
TGSGSSASRAGCRCGRLESRAPLPSDADAASGGSRNTNKRPADSANVHPI
RVKREGVDNRVPDDGESGACSEADPVVKTEDTEVPCKMEPAEAAGRASGA
RAKRRKTAGRHVRGS*
back to top

mRNA from alignment at L-elsbetiae_contig1497:14652..16614-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1497.3566.1 ID=mRNA_L-elsbetiae_contig1497.3566.1|Name=mRNA_L-elsbetiae_contig1497.3566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1963bp|location=Sequence derived from alignment at L-elsbetiae_contig1497:14652..16614- (Laminarionema elsbetiae ELsaHSoW15)
GGACGTGAAGAACAAGAGATGCACCCGCCACGGTTGCACCAAGCTCCCGT
CATACGGCAAGATTGGAGGCAAGGCGGAGTACTGCCGTGATCATGCCGAA
GATGGGATTGTGGACGTGACGAGCAAGAGATGCACCCACCACGGTTGCAC
AAAGACGCCGTCATACGGCAAGGCTGGCAGCAAAGCGGAGTACTGCCGTG
ATCATGCCATGGACGAGATGGTGGACGTGAAGAACAAGATATGCACCCAC
CACGGTTGTACCAAGCAACCGTCATACGGCAAGGCTGGCAACAAGGCGGG
ATACTGCAGTGGCCATGCTCAGAACGGGATGGTAGACGTGAAGCACAAGA
GATGCACCCACCACGGTTGTACCAAGACGCCGTCGTATGGCGAGGCTGGC
GGCAGGGCAGGGTGTTGCCAAGACCACGCGAAGGACGGCATGGTTCGTCT
TTGTGGCCCGTCTAGCGAGGACAGCGAGAGGGATGGTGGACCGGATAGCA
CGGGAGCAACGGGCAGTGGCAGCTCAGCTAGCCGTGCTGGTTGCCGCTGT
GGAAGGCTGGAGAGCCGCGCTCCTTTGCCCTCCGACGCAGATGCTGCCTC
CGGCGGGAGCAGGAATACCAACAAGCGACCAGCTGACAGTGCGAACGTTC
ACCCGATTCGGGTGAAACGAGAGGGGGTTGACAACAGGGTACCCGACGAC
GGGGAATCTGGGGCGTGTTCGGAGGCAGACCCTGTAGTAAAGACGGAGGA
CACGGAGGTGCCATGTAAGATGGAGCCGGCGGAAGCTGCAGGTGCATTGA
AAACAAATTTGAATGTATTTTGGTGACCTCGGAGTGTTGTCGTACTCTCT
GGTCGATGTACACACCAGATATAGACGAGGATTGAAGGCAGAGTAGTATG
TACAACGCACAACAAACCGAACAGGCCTGTAGACACTGCGGCTGCAGCGC
TGAGCGGCGAAGATGTACAGTAACAGCAGAGAGATTGGCTTGGCATTCTC
ACTTGCCTTGGATCTGCCGCTCGCTACATATGTATTGTGGACGCTGAAGG
TCCACGCCTGCTACATACTTCGCACCGCATGTGTGCCCTAGAGGAAGTGT
GTTGCACTCACTATGTAGTAGGCGTTTCGGTTTTCGGTCACCTACCGGTC
TGTAAAGTAGGCCGCCCTGCTTTTGAGCTGCAACGTTCAGTCCGTTCTCG
TCTGCCGCCAGGAGAGGTTTCCCTTTGTGCCTCATCTGCCGCGGCAGATA
CCACTGCCTTTTGCCGGTGTTCGCGCAATATTGTGCACAACATGGAGAGA
TGTGGTGAATTCACGCTTGTCACACCACCATTCATTTCGCATGAACAGTA
TTAGAGGCTGCTCCCCGGCGGTTTCTGTTTTACATCTACGGTGACCTTCT
CTGCTTGCCTACCATTCGGACGTGGCTTTTGTGCGCCCGCCTCTTTCCAA
TCATTGCAGGCCGGGCAAGCGGAGCGAGGGCAAAGCGGAGAAAGACCGCG
GGACGGCACGTGCGAGGTTCCTGATGTTGCACCCACGAGCAGCAGCACCG
CAGTGCACGCGGCGAACCCGTGGCGAGATAAGTTGCCCACGAGCACCTGC
AAACCGCGAAACTACTGCCAGCGTATATGGTATTTACGTATTATCGGTCT
GCTGTCGTGTGTTGTTTCCTTGTCTAATGACGTGATAGACGTAGGTGCCA
TGTGTAGACTATCTGCCGTTCGCTGGTATTGATAAAGCAACCCGACGAGT
ATCGTCGGTTTTGCTAGTCCCCAAGCTCTGTATTTTTTGAAGTGGGCGGA
TTGTCTCGGCAGCAGGGCCGGAAACCTCCATGGAGGTGATGCCGACCCGA
TGTGGGGAAACAGATAGACCGCAGGGGAACTCATTGGAAAGGCGTCTATG
AAAAAAGAGAGAACTTGGGAATTCCTAGTTTGGACTGCATTTTTCGGTCA
TGGATTTGTTGGT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1497:14652..16614-

>mRNA_L-elsbetiae_contig1497.3566.1 ID=mRNA_L-elsbetiae_contig1497.3566.1|Name=mRNA_L-elsbetiae_contig1497.3566.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig1497:14652..16614- (Laminarionema elsbetiae ELsaHSoW15)
ATGGACGAGATGGTGGACGTGAAGAACAAGATATGCACCCACCACGGTTG
TACCAAGCAACCGTCATACGGCAAGGCTGGCAACAAGGCGGGATACTGCA
GTGGCCATGCTCAGAACGGGATGGTAGACGTGAAGCACAAGAGATGCACC
CACCACGGTTGTACCAAGACGCCGTCGTATGGCGAGGCTGGCGGCAGGGC
AGGGTGTTGCCAAGACCACGCGAAGGACGGCATGGTTCGTCTTTGTGGCC
CGTCTAGCGAGGACAGCGAGAGGGATGGTGGACCGGATAGCACGGGAGCA
ACGGGCAGTGGCAGCTCAGCTAGCCGTGCTGGTTGCCGCTGTGGAAGGCT
GGAGAGCCGCGCTCCTTTGCCCTCCGACGCAGATGCTGCCTCCGGCGGGA
GCAGGAATACCAACAAGCGACCAGCTGACAGTGCGAACGTTCACCCGATT
CGGGTGAAACGAGAGGGGGTTGACAACAGGGTACCCGACGACGGGGAATC
TGGGGCGTGTTCGGAGGCAGACCCTGTAGTAAAGACGGAGGACACGGAGG
TGCCATGTAAGATGGAGCCGGCGGAAGCTGCAGATGGACGAGATGGTGGA
CGTGAAGAACAAGATATGCACCCACCACGGTTGTACCAAGCAACCGTCAT
ACGGCAAGGCTGGCAACAAGGCGGGATACTGCAGTGGCCATGCTCAGAAC
GGGATGGTAGACGTGAAGCACAAGAGATGCACCCACCACGGTTGTACCAA
GACGCCGTCGTATGGCGAGGCTGGCGGCAGGGCAGGGTGTTGCCAAGACC
ACGCGAAGGACGGCATGGTTCGTCTTTGTGGCCCGTCTAGCGAGGACAGC
GAGAGGGATGGTGGACCGGATAGCACGGGAGCAACGGGCAGTGGCAGCTC
AGCTAGCCGTGCTGGTTGCCGCTGTGGAAGGCTGGAGAGCCGCGCTCCTT
TGCCCTCCGACGCAGATGCTGCCTCCGGCGGGAGCAGGAATACCAACAAG
CGACCAGCTGACAGTGCGAACGTTCACCCGATTCGGGTGAAACGAGAGGG
GGTTGACAACAGGGTACCCGACGACGGGGAATCTGGGGCGTGTTCGGAGG
CAGACCCTGTAGTAAAGACGGAGGACACGGAGGTGCCATGTAAGATGGAG
CCGGCGGAAGCTGCAGGCCGGGCAAGCGGAGCGAGGGCAAAGCGGAGAAA
GACCGCGGGACGGCACGTGCGAGGTTCCTGAGCCGGGCAAGCGGAGCGAG
GGCAAAGCGGAGAAAGACCGCGGGACGGCACGTGCGAGGTTCCTGA
back to top