mRNA_L-elsbetiae_contig14966.3563.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14966.3563.1
Unique NamemRNA_L-elsbetiae_contig14966.3563.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Match: A0A6H5JSJ1_9PHAE (HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSJ1_9PHAE)

HSP 1 Score: 71.6 bits (174), Expect = 8.180e-11
Identity = 67/222 (30.18%), Postives = 100/222 (45.05%), Query Frame = 1 
Query:   52 ISIDPMLNWQKELAKAASMALKGDIGHYWDGA-------------WATLIHMAPDRMSVHQRYPDDEMER-------------LVRYSRERGIDHCSEPVQDAYLVLSEQAPADRKRFVQQSRPVVCD-TSSSEPEVRTSKKSXXXXXXXXXKKPLTGY----NKYVMDQTPFVKKELQNI-PGKGKDTNGKLAQEWKLLTSEAKASYEKEATKEDEARYVQ 621
            +SI+P  +WQ  L  AAS  +   +G    GA             WA+++H+AP R+SVHQR  D   +              LV  ++E    H S  VQDA+++ +   P+   RFV+ SR +    T SSEP     KK+              GY    N +V D+     ++ Q + PG   + N  L Q WK LT+E K  Y+  +   D+ RY++
Sbjct:  146 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVSGMEPLFKAVPLWASVVHVAPHRVSVHQRSADGATDGVAFQHSLVSGDGGLVSTAKEEMY-HSS--VQDAFVIFNTH-PSGSTRFVEHSRALTSGHTHSSEPRRTVPKKTSPPKRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDV-DKCRYLK 362
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BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Match: D7G5V4_ECTSI (HMG box domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5V4_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 7.540e-10
Identity = 67/228 (29.39%), Postives = 103/228 (45.18%), Query Frame = 1 
Query:   52 ISIDPMLNWQKELAKAASMALKGDIGHYWDGA-------------WATLIHMAPDRMSVHQRYPDDEMERLV-RYSRERG----IDHCSEP-----VQDAYLVLSEQAPADRKRFVQQSRPVVCD-TSSSEPEVRTSKKSXXXXXXXXXKKPLTGY----NKYVMDQTPFVKKELQNI-PGKGKDTNGKLAQEWKLLTSEAKASYEKEATKEDEARYVQAKGGVAPAG 648
            +SI+P  +WQ  L  AAS  +   +G    GA             WA+++H+AP R+SVHQR  D   + +  ++S   G    +    E      VQDA+++ +   P+   RFV+ S+ +    T SSE      KK+              GY    N +V D+     ++ Q + PG   + N  L Q WK LT+E K  Y+  +   D+ RY+  K G+ P G
Sbjct:   83 VSIEPRPDWQDILDAAASSLIPDGVGSNACGAVGGMEPLFNALPLWASVVHVAPHRVSVHQRSSDGVTDGVAFQHSLVNGDGGLVSTAKEEMYHNSVQDAFVIFNTH-PSGSTRFVEHSQALTSGHTRSSEARRMVPKKTSPPRRKRKDPNRPRGYVSAFNFFVKDKRSAYVRDAQGVSPGNNNEVNKMLGQAWKELTTEEKNCYQARSDV-DKCRYL--KRGITPFG 306
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14966.3563.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JSJ1_9PHAE8.180e-1130.18HMG protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
D7G5V4_ECTSI7.540e-1029.39HMG box domain-containing protein n=1 Tax=Ectocarp... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14966contigL-elsbetiae_contig14966:1437..3435 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHigh mobility group domain protein
Ec32 orthologEc-13_001750.1
Exons4
Model size702
Cds size702
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14966.3563.1prot_L-elsbetiae_contig14966.3563.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14966 1437..3435 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.4370077-CDS-L-elsbetiae_contig14966:1436..15171622815604.4370077-CDS-L-elsbetiae_contig14966:1436..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 1437..1517 -
1691682985.9647603-CDS-L-elsbetiae_contig14966:1436..15171691682985.9647603-CDS-L-elsbetiae_contig14966:1436..1517Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 1437..1517 -
1622815604.4471424-CDS-L-elsbetiae_contig14966:2568..27031622815604.4471424-CDS-L-elsbetiae_contig14966:2568..2703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 2569..2703 -
1691682985.9802463-CDS-L-elsbetiae_contig14966:2568..27031691682985.9802463-CDS-L-elsbetiae_contig14966:2568..2703Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 2569..2703 -
1622815604.458856-CDS-L-elsbetiae_contig14966:2830..31361622815604.458856-CDS-L-elsbetiae_contig14966:2830..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 2831..3136 -
1691682985.989632-CDS-L-elsbetiae_contig14966:2830..31361691682985.989632-CDS-L-elsbetiae_contig14966:2830..3136Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 2831..3136 -
1622815604.4691987-CDS-L-elsbetiae_contig14966:3255..34351622815604.4691987-CDS-L-elsbetiae_contig14966:3255..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 3256..3435 -
1691682985.998398-CDS-L-elsbetiae_contig14966:3255..34351691682985.998398-CDS-L-elsbetiae_contig14966:3255..3435Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14966 3256..3435 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14966.3563.1

>prot_L-elsbetiae_contig14966.3563.1 ID=prot_L-elsbetiae_contig14966.3563.1|Name=mRNA_L-elsbetiae_contig14966.3563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=234bp
RSCLPWLFGFFLDLFFSISIDPMLNWQKELAKAASMALKGDIGHYWDGAW
ATLIHMAPDRMSVHQRYPDDEMERLVRYSRERGIDHCSEPVQDAYLVLSE
QAPADRKRFVQQSRPVVCDTSSSEPEVRTSKKSKKPKDPNAPKKPLTGYN
KYVMDQTPFVKKELQNIPGKGKDTNGKLAQEWKLLTSEAKASYEKEATKE
DEARYVQAKGGVAPAGSTCAKSLMSSGCSLRWNS
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mRNA from alignment at L-elsbetiae_contig14966:1437..3435-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14966.3563.1 ID=mRNA_L-elsbetiae_contig14966.3563.1|Name=mRNA_L-elsbetiae_contig14966.3563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1999bp|location=Sequence derived from alignment at L-elsbetiae_contig14966:1437..3435- (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGTGCCTGCCGTGGTTGTTTGGCTTTTTCCTCGATCTATTCTTCAG
CATATCCATCGATCCAATGTTAAACTGGCAGAAAGAACTTGCAAAGGCGG
CATCAATGGCTCTTAAGGGCGACATCGGACACTATTGGGATGGAGCTTGG
GCGACATTGATACATATGGCGCCAGATCGGGTATGTATTTATGTGCATCA
ACATTCTTCTCATATTTTCTGGCTGTCTTTCCGTGTGTGCTGCATGTAGC
GGAAGTGTTCACAACAACCGTTGCCGTTGTCATCACAAAACATGCACAGA
TGTCAGTTCACCAACGCTACCCTGATGACGAAATGGAGAGACTTGTGCGA
TACTCTAGGGAACGAGGAATCGACCACTGCTCGGAGCCAGTTCAAGACGC
TTACCTTGTTTTAAGCGAGCAAGCACCCGCCGACCGCAAGCGATTTGTGC
AACAAAGCCGACCCGTGGTGTGCGACACGAGTTCTTCTGAACCAGAAGTA
CGGACATCCAAGAAGAGCAAAAAACCCAAGGACCCAAATGCTCCGAAGAA
ACCCCTTACTGGCTACAACAAATACGTCATGGACCAAACACCTTTCGTGA
AAAAGGTGATGGGCCTGTGTTTTCCATATTATTATCTACCGTCGCGTATT
GTGTTTGTACCGTCCCACGTGTAGGCCGCAATCACGTCGTCGGCCGACGA
ACCTGCCTTCTTTGCATCTCACATTGCGTCAGGAATTGCAAAATATTCCG
GGCAAAGGTAAAGATACCAACGGAAAGCTTGCGCAAGAATGGAAACTGTT
GACTAGCGAAGCAAAGGCAAGTTACGAGAAAGAAGCCACCAAGGAGGATG
AAGCTCGTTATGTTCAGGTAAGGTACATATATTCTAGTGGTGTGCGATCT
TGCACTTGTGCGTCAGAAATTAGGTGCAGACAGGTACATCTGCACTACTG
TGTGGTCATATTTGCTTCCGTGTATGGTTCCCAACAGACTTGCGTCACCC
ATATCTCACGGTTGAGCCAGCGGCCCGTAGCCTCTTGGGCTGGTGGGCGC
TTTACAAAGCCGACCCTCCAATGTGTATCTACAGATACCCACTTTTCCTC
GCGGTGCAAACTGTGGTTTTTTTCGAGAGCCCCACGCAAACTTTCGCCTT
AGTTGTGTTCGTCGTACGCACAGGGAGAGAGAAGGCGAGCTGGCGTCGCT
CAAACAGACCCTGTAGCTTTGGGCCGAGGCATCCCGTTTCGGATCCTTGG
GCCGGAGTGTGACGTGTTTGATGGTTTTAAGTCATGGACTAGTACCTGGA
GCTTTAAAATGGGCGTTATAATGAAACGTAGGCCATCATGGCGTTGTCAA
CGCGTAAGATAGGACCCGACTGAAACAGACCACCTTATGCAGCGTTTTCC
AAGGGGCCATACTAAATGTGTTCACTAAACGTCTCTTGTCAGCTAGCTCT
ACGTACCTTCCGCCACGTCAAGATGCCCTAACCTCCCGATTTCAATCCTA
TGCTAGAAAACTGTCATGTGATGACGCATCGCTAACTAGGCGGTCGCGCG
CAATTTTCACGCTGGGAATCTGGAGCAGGGTGCTCAAACTATGAAGCCAG
CAACGCCTCGACAGATAGCGTACAACTACTTCGCACAGCAGGTGCAGCGC
ATGGTCCACACAAAGGATCACGAACAGCTAGTATGGCGCACTGTTTCCAA
GTTTCCAAGTTTCCGAAATCTTAAGAAGATGGGGTTGGCTCTCCAAACGC
TCCAGCCAGTCATCAAATCATGTTTTTGCTCAGCATTTAGAAACTTCGAA
GCAGTTTTTAGCATGTTTCAAGCACCCCAACTTTGGCCTGTGGTCGTCTA
GTAGACGGGATACACGTATACTTCCAAGTATCTTCTTCCCATCTCATTTT
TATTTGCTTTTCGAACAGGCGAAGGGAGGTGTGGCGCCTGCTGGTTCCAC
TTGCGCCAAGAGCCTCATGAGTTCAGGCTGCAGCCTAAGGTGGAACAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14966:1437..3435-

>mRNA_L-elsbetiae_contig14966.3563.1 ID=mRNA_L-elsbetiae_contig14966.3563.1|Name=mRNA_L-elsbetiae_contig14966.3563.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1404bp|location=Sequence derived from alignment at L-elsbetiae_contig14966:1437..3435- (Laminarionema elsbetiae ELsaHSoW15)
CGCTCGTGCCTGCCGTGGTTGTTTGGCTTTTTCCTCGATCTATTCTTCAG
CATATCCATCGATCCAATGTTAAACTGGCAGAAAGAACTTGCAAAGGCGG
CATCAATGGCTCTTAAGGGCGACATCGGACACTATTGGGATGGAGCTTGG
GCGACATTGATACATATGGCGCCAGATCGGCGCTCGTGCCTGCCGTGGTT
GTTTGGCTTTTTCCTCGATCTATTCTTCAGCATATCCATCGATCCAATGT
TAAACTGGCAGAAAGAACTTGCAAAGGCGGCATCAATGGCTCTTAAGGGC
GACATCGGACACTATTGGGATGGAGCTTGGGCGACATTGATACATATGGC
GCCAGATCGGATGTCAGTTCACCAACGCTACCCTGATGACGAAATGGAGA
GACTTGTGCGATACTCTAGGGAACGAGGAATCGACCACTGCTCGGAGCCA
GTTCAAGACGCTTACCTTGTTTTAAGCGAGCAAGCACCCGCCGACCGCAA
GCGATTTGTGCAACAAAGCCGACCCGTGGTGTGCGACACGAGTTCTTCTG
AACCAGAAGTACGGACATCCAAGAAGAGCAAAAAACCCAAGGACCCAAAT
GCTCCGAAGAAACCCCTTACTGGCTACAACAAATACGTCATGGACCAAAC
ACCTTTCGTGAAAAAGATGTCAGTTCACCAACGCTACCCTGATGACGAAA
TGGAGAGACTTGTGCGATACTCTAGGGAACGAGGAATCGACCACTGCTCG
GAGCCAGTTCAAGACGCTTACCTTGTTTTAAGCGAGCAAGCACCCGCCGA
CCGCAAGCGATTTGTGCAACAAAGCCGACCCGTGGTGTGCGACACGAGTT
CTTCTGAACCAGAAGTACGGACATCCAAGAAGAGCAAAAAACCCAAGGAC
CCAAATGCTCCGAAGAAACCCCTTACTGGCTACAACAAATACGTCATGGA
CCAAACACCTTTCGTGAAAAAGGAATTGCAAAATATTCCGGGCAAAGGTA
AAGATACCAACGGAAAGCTTGCGCAAGAATGGAAACTGTTGACTAGCGAA
GCAAAGGCAAGTTACGAGAAAGAAGCCACCAAGGAGGATGAAGCTCGTTA
TGTTCAGGAATTGCAAAATATTCCGGGCAAAGGTAAAGATACCAACGGAA
AGCTTGCGCAAGAATGGAAACTGTTGACTAGCGAAGCAAAGGCAAGTTAC
GAGAAAGAAGCCACCAAGGAGGATGAAGCTCGTTATGTTCAGGCGAAGGG
AGGTGTGGCGCCTGCTGGTTCCACTTGCGCCAAGAGCCTCATGAGTTCAG
GCTGCAGCCTAAGGTGGAACAGCGCGAAGGGAGGTGTGGCGCCTGCTGGT
TCCACTTGCGCCAAGAGCCTCATGAGTTCAGGCTGCAGCCTAAGGTGGAA
CAGC
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