mRNA_L-elsbetiae_contig1496.3561.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1496.3561.1
Unique NamemRNA_L-elsbetiae_contig1496.3561.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: D8LQW4_ECTSI (Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQW4_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 2.980e-35
Identity = 58/58 (100.00%), Postives = 58/58 (100.00%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL
Sbjct:  173 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 230
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A7S1SWK7_9CHLO (Methionine aminopeptidase (Fragment) n=1 Tax=Tetraselmis chuii TaxID=63592 RepID=A0A7S1SWK7_9CHLO)

HSP 1 Score: 119 bits (299), Expect = 8.430e-32
Identity = 52/58 (89.66%), Postives = 56/58 (96.55%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            VERNAYPSPLNYYNFPKSVCTSVNE ICHGIPD+REL++GDIVNVDVTAYF G+HGDL
Sbjct:  129 VERNAYPSPLNYYNFPKSVCTSVNEVICHGIPDLRELQNGDIVNVDVTAYFEGYHGDL 186
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A7S4D8K2_HETAK (Methionine aminopeptidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8K2_HETAK)

HSP 1 Score: 115 bits (289), Expect = 1.390e-30
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +ERNAYPSP NYYNFP+SVCTSVNE ICHGIPD   LKDGDIVNVDVTAYFGG+HGDL
Sbjct:   43 IERNAYPSPKNYYNFPRSVCTSVNEVICHGIPDTYVLKDGDIVNVDVTAYFGGYHGDL 100
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A1X2IWX4_9FUNG (Methionine aminopeptidase n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IWX4_9FUNG)

HSP 1 Score: 117 bits (294), Expect = 1.710e-30
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +ERNAYPSPLNYY FPKSVCTSVNE ICHGIPD R LKDGDIVN+DVT Y+GGFHGDL
Sbjct:  158 IERNAYPSPLNYYKFPKSVCTSVNEVICHGIPDQRPLKDGDIVNLDVTCYYGGFHGDL 215
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A061R3Q8_9CHLO (Methionine aminopeptidase n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R3Q8_9CHLO)

HSP 1 Score: 117 bits (294), Expect = 2.210e-30
Identity = 51/58 (87.93%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            + R+AYPSPLNYYNFPKSVCTSVNE ICHGIPD REL+DGDIVNVDVTAYF GFHGDL
Sbjct:  161 IRRDAYPSPLNYYNFPKSVCTSVNEVICHGIPDQRELQDGDIVNVDVTAYFQGFHGDL 218
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A0D2MDF8_9CHLO (Methionine aminopeptidase n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MDF8_9CHLO)

HSP 1 Score: 114 bits (285), Expect = 3.090e-30
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            VE  AYPSPLNYYNFPKSVCTS+NE ICHGIPD REL+DGDIVNVDVTA+ GG+HGDL
Sbjct:   11 VEAGAYPSPLNYYNFPKSVCTSINEVICHGIPDQRELQDGDIVNVDVTAFIGGWHGDL 68
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A367IUM8_RHIST (Methionine aminopeptidase (Fragment) n=1 Tax=Rhizopus stolonifer TaxID=4846 RepID=A0A367IUM8_RHIST)

HSP 1 Score: 115 bits (287), Expect = 3.240e-30
Identity = 49/58 (84.48%), Postives = 52/58 (89.66%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +ER AYPSPLNYY FPKSVCTSVNE ICHGIPD R LKDGDIVN+DVT Y+GGFHGDL
Sbjct:   67 IERGAYPSPLNYYKFPKSVCTSVNEVICHGIPDKRPLKDGDIVNLDVTCYYGGFHGDL 124
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A7J7PGX4_9CHLO (Methionine aminopeptidase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7PGX4_9CHLO)

HSP 1 Score: 116 bits (291), Expect = 7.160e-30
Identity = 50/58 (86.21%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +E  AYPSPLNYYNFPKSVCTSVNE ICHGIPD REL+DGDIVNVDVTAY GG+HGDL
Sbjct:  170 IEAGAYPSPLNYYNFPKSVCTSVNEVICHGIPDQRELQDGDIVNVDVTAYIGGYHGDL 227
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A1X2HPG0_SYNRA (Methionine aminopeptidase n=1 Tax=Syncephalastrum racemosum TaxID=13706 RepID=A0A1X2HPG0_SYNRA)

HSP 1 Score: 115 bits (289), Expect = 9.430e-30
Identity = 49/58 (84.48%), Postives = 53/58 (91.38%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +ER AYPSPLNYYNFPKSVCTSVNE ICHGIPD R LK+GDIVN+DVT Y+GGFHGDL
Sbjct:  159 IERGAYPSPLNYYNFPKSVCTSVNEVICHGIPDQRVLKEGDIVNLDVTCYYGGFHGDL 216
[Close]
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Match: A0A068RHE7_9FUNG (Methionine aminopeptidase n=2 Tax=Lichtheimia TaxID=688353 RepID=A0A068RHE7_9FUNG)

HSP 1 Score: 115 bits (289), Expect = 9.430e-30
Identity = 49/58 (84.48%), Postives = 54/58 (93.10%), Query Frame = 1 
Query:    1 VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAYFGGFHGDL 174
            +ERNAYPSPLNYY+FPKSVCTSVNE ICHGIPD RELK+GDIVN+DVT Y+ GFHGDL
Sbjct:  159 IERNAYPSPLNYYHFPKSVCTSVNEVICHGIPDKRELKEGDIVNLDVTLYYNGFHGDL 216
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1496.3561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQW4_ECTSI2.980e-35100.00Methionine aminopeptidase n=2 Tax=Ectocarpus TaxID... [more]
A0A7S1SWK7_9CHLO8.430e-3289.66Methionine aminopeptidase (Fragment) n=1 Tax=Tetra... [more]
A0A7S4D8K2_HETAK1.390e-3086.21Methionine aminopeptidase n=1 Tax=Heterosigma akas... [more]
A0A1X2IWX4_9FUNG1.710e-3086.21Methionine aminopeptidase n=1 Tax=Absidia repens T... [more]
A0A061R3Q8_9CHLO2.210e-3087.93Methionine aminopeptidase n=1 Tax=Tetraselmis sp. ... [more]
A0A0D2MDF8_9CHLO3.090e-3084.48Methionine aminopeptidase n=1 Tax=Monoraphidium ne... [more]
A0A367IUM8_RHIST3.240e-3084.48Methionine aminopeptidase (Fragment) n=1 Tax=Rhizo... [more]
A0A7J7PGX4_9CHLO7.160e-3086.21Methionine aminopeptidase n=1 Tax=Scenedesmus sp. ... [more]
A0A1X2HPG0_SYNRA9.430e-3084.48Methionine aminopeptidase n=1 Tax=Syncephalastrum ... [more]
A0A068RHE7_9FUNG9.430e-3084.48Methionine aminopeptidase n=2 Tax=Lichtheimia TaxI... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1496contigL-elsbetiae_contig1496:5848..6021 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score130.6
Seed ortholog evalue2.4e-28
Seed eggNOG ortholog2880.D8LQW4
Preferred nameMETAP1
KEGG koko:K01265
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004177,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006417,GO:0006464,GO:0006508,GO:0006807,GO:0008150,GO:0008152,GO:0008233,GO:0008235,GO:0008237,GO:0008238,GO:0008277,GO:0009889,GO:0009966,GO:0009987,GO:0010468,GO:0010556,GO:0010608,GO:0010646,GO:0016787,GO:0018193,GO:0018206,GO:0019222,GO:0019538,GO:0022400,GO:0023051,GO:0031323,GO:0031326,GO:0031365,GO:0032101,GO:0032268,GO:0034248,GO:0036211,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048583,GO:0050789,GO:0050794,GO:0051171,GO:0051246,GO:0060255,GO:0065007,GO:0070011,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:2000112
EggNOG free text desc.metalloexopeptidase activity
EggNOG OGsCOG0024@1,KOG2738@2759
EC3.4.11.18
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Exons1
Model size174
Cds size174
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.285307-CDS-L-elsbetiae_contig1496:5847..60211622815604.285307-CDS-L-elsbetiae_contig1496:5847..6021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1496 5848..6021 +
1691682985.8728256-CDS-L-elsbetiae_contig1496:5847..60211691682985.8728256-CDS-L-elsbetiae_contig1496:5847..6021Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1496 5848..6021 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1496.3561.1prot_L-elsbetiae_contig1496.3561.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1496 5848..6021 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1496.3561.1

>prot_L-elsbetiae_contig1496.3561.1 ID=prot_L-elsbetiae_contig1496.3561.1|Name=mRNA_L-elsbetiae_contig1496.3561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=58bp
VERNAYPSPLNYYNFPKSVCTSVNESICHGIPDMRELKDGDIVNVDVTAY
FGGFHGDL
back to top

mRNA from alignment at L-elsbetiae_contig1496:5848..6021+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1496.3561.1 ID=mRNA_L-elsbetiae_contig1496.3561.1|Name=mRNA_L-elsbetiae_contig1496.3561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=174bp|location=Sequence derived from alignment at L-elsbetiae_contig1496:5848..6021+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGCGCAACGCGTACCCATCGCCCCTGAACTACTACAACTTTCCCAA
GAGCGTGTGCACCTCGGTGAACGAGAGCATCTGCCACGGTATCCCGGACA
TGCGGGAGCTCAAGGACGGCGACATCGTCAACGTGGACGTGACGGCGTAC
TTCGGGGGCTTCCACGGCGACCTC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1496:5848..6021+

>mRNA_L-elsbetiae_contig1496.3561.1 ID=mRNA_L-elsbetiae_contig1496.3561.1|Name=mRNA_L-elsbetiae_contig1496.3561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=348bp|location=Sequence derived from alignment at L-elsbetiae_contig1496:5848..6021+ (Laminarionema elsbetiae ELsaHSoW15)
GTGGAGCGCAACGCGTACCCATCGCCCCTGAACTACTACAACTTTCCCAA
GAGCGTGTGCACCTCGGTGAACGAGAGCATCTGCCACGGTATCCCGGACA
TGCGGGAGCTCAAGGACGGCGACATCGTCAACGTGGACGTGACGGCGTAC
TTCGGGGGCTTCCACGGCGACCTCGTGGAGCGCAACGCGTACCCATCGCC
CCTGAACTACTACAACTTTCCCAAGAGCGTGTGCACCTCGGTGAACGAGA
GCATCTGCCACGGTATCCCGGACATGCGGGAGCTCAAGGACGGCGACATC
GTCAACGTGGACGTGACGGCGTACTTCGGGGGCTTCCACGGCGACCTC
back to top