mRNA_L-elsbetiae_contig1495.3556.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1495.3556.1
Unique NamemRNA_L-elsbetiae_contig1495.3556.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: D7FQ78_ECTSI (LMWPc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ78_ECTSI)

HSP 1 Score: 231 bits (589), Expect = 3.140e-73
Identity = 121/196 (61.73%), Postives = 142/196 (72.45%), Query Frame = 1
Query:    1 PTTKSNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAVQSLEQQVMSNGE-----------PSMRLSAASIASSHSVAGDGKKRQSSSPRAPVLISVFEPEIPDPWHGTIGCYRECTDMITEAVKKALEEAVP 555
            P   SNVCRSPIAEGLAKKWLSER+GVGVQDLE+ GYKV+SRG STDFEPVGSPAS HG+T+MRE + VDM+AHRS MLS+ADVLEATHIYCM++RHHD+V SL ++   N             PS R S      S   AG   +R       PV++SVFEPE+PDPWHGT+ CYRECT +I+EAV +ALE   P
Sbjct:   33 PVPYSNVCRSPIAEGLAKKWLSERYGVGVQDLEQAGYKVKSRGCSTDFEPVGSPASPHGVTIMREKYDVDMSAHRSAMLSEADVLEATHIYCMSRRHHDSVLSLLRRDAPNDHDLHSSPPLDRPPSSRASPGPPCYSTPDAGTTGERGEMP--FPVVVSVFEPEVPDPWHGTMECYRECTGIISEAVTRALEREAP 226          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A6H5K5S6_9PHAE (LMWPc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5S6_9PHAE)

HSP 1 Score: 224 bits (571), Expect = 7.300e-71
Identity = 129/223 (57.85%), Postives = 159/223 (71.30%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAVQSLEQQVMSNGE-----------PSMRLSAASIASSHSVAGD-GKKRQSSSPRAPVLISVFEPEIPDPWHGTIGCYRECTDMITEAVKKALEEAVPLVVEDSPQQQQAGSPASTRDQEEDQSEPQS 645
            SNVCRSPIAEGLAKKWLSER+GVGVQDLE+ GYKV+SRG STDFEPVGSPAS HG+T+MRE +GVD++AHRS MLS+ADVLEATHIYCM++ HHD+V SL ++  S              PS R S    + S   AG  G++R+       V++SVFEPE+PDPWHGT+  YRECT +ITEAV +ALE   P     S  QQQ  S +++   +ED+ +PQS
Sbjct:   11 SNVCRSPIAEGLAKKWLSERYGVGVQDLEQAGYKVKSRGCSTDFEPVGSPASPHGVTIMREQYGVDISAHRSAMLSEADVLEATHIYCMSRCHHDSVLSLLRRDPSKDHDLHSSPPLDRPPSSRASPGPPSYSAPDAGTTGERREMP---FSVVVSVFEPEVPDPWHGTMEYYRECTGIITEAVTRALEREAPG---GSDGQQQRESSSTSPRPDEDRGKPQS 227          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A1V9ZFN0_9STRA (Acid phosphatase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZFN0_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 5.870e-17
Identity = 44/93 (47.31%), Postives = 58/93 (62.37%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRH 291
            SN CRSP+AE LAK WL++     V        +V+S  +S +FEP GSPAS+HG+  M    G+DM AHRS +++K  V EA  IYC+  RH
Sbjct:    9 SNTCRSPMAEALAKHWLTQHPSPSV--------RVRSLALSDEFEPPGSPASAHGVAAMARR-GIDMQAHRSRLITKDLVDEADVIYCVTVRH 92          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A8K1FNX8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FNX8_PYTOL)

HSP 1 Score: 84.0 bits (206), Expect = 7.320e-17
Identity = 40/100 (40.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAVQSL 312
            SN CRSP+AE  A +WL  R G+     EE G ++ S  I+  F+  GSPAS+H ++VM + + +D++ HRS +L++    EA +I C++  H D V+ L
Sbjct:    9 SNTCRSPVAELFAVEWLKRRLGLSRAQQEEKGIRIHSAAITDAFDREGSPASAHAVSVMHQ-YNIDLSLHRSRLLTEQMCAEADYIVCVSMGHRDKVREL 107          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: K3WBP6_GLOUD (LMWPc domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WBP6_GLOUD)

HSP 1 Score: 81.3 bits (199), Expect = 7.790e-16
Identity = 40/93 (43.01%), Postives = 60/93 (64.52%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRH 291
            SN CRSP+AE  A +W   R  +  ++ E+ G ++QS  I+  FE  GSPAS + I VM+E + +D++AHRS ML++  V+EA  + C+A  H
Sbjct:    9 SNTCRSPVAELFAVEWFKRRLKLSREEQEQKGIRIQSAAITDAFEKPGSPASLNAIKVMKE-YQIDLSAHRSQMLTEQMVMEADFVVCVASGH 100          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A2D4BTC7_PYTIN (LMWPc domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BTC7_PYTIN)

HSP 1 Score: 80.1 bits (196), Expect = 2.410e-15
Identity = 37/97 (38.14%), Postives = 61/97 (62.89%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAV 303
            SN CRSP+AE  A +WL  R  +  +  E+ G ++ S  ++  F+  GSPAS+H ++VMRE + +D++ HRS +L+++   +A +I C+   H D V
Sbjct:    9 SNTCRSPVAELFAVEWLKRRLNMERKQQEQRGVRIHSAALTDAFDAEGSPASAHAVSVMRE-YKIDLSQHRSRLLTESMCADADYIVCVTMGHRDKV 104          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A482SI70_9ARCH (LMWPc domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SI70_9ARCH)

HSP 1 Score: 78.2 bits (191), Expect = 9.800e-15
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADV 252
            SN CRSP+AE L ++ L  R   G+ D E   Y+V SR ISTD+EP GSPAS +G+ VMR+ + +DMT+HRS +LS  D+
Sbjct:   12 SNTCRSPMAEHLCREKLRTR---GL-DKE---YEVSSRSISTDYEPEGSPASENGVLVMRDRYNIDMTSHRSTLLSGNDL 84          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A3M6VKQ9_9STRA (LMWPc domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKQ9_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 4.420e-14
Identity = 35/90 (38.89%), Postives = 57/90 (63.33%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMA 282
            SN CRSP++E  A ++   +  +  +  EE G  +QS  ++  FE VGSPAS H + VM++ + VD++ HRS +L++   LEA ++ C+A
Sbjct:    9 SNTCRSPVSELFAVEYFRRKLNMSREQQEERGIIIQSAALTDAFERVGSPASKHTVDVMKKKYHVDLSRHRSQLLTETMCLEADYVVCVA 98          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A353P2V4_9BACT (Threonylcarbamoyl-AMP synthase n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A353P2V4_9BACT)

HSP 1 Score: 79.7 bits (195), Expect = 6.360e-14
Identity = 37/99 (37.37%), Postives = 60/99 (60.61%), Query Frame = 1
Query:   16 NVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAVQSL 312
            N CRSPIAE +AKK+L+E+ G  +  LE++GYK++S G+      +   A+S G  +  E+ G D++ H+S  L+   +  A +I+ M+  H DA+  L
Sbjct:  231 NTCRSPIAEAMAKKFLAEKFGCNIDQLEDMGYKIESAGVLA----MNGIAASDGSVMFCESRGADLSKHKSQRLTVEKIKSADYIFAMSNGHKDAIMQL 325          
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Match: A0A8K1FI87_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1FI87_PYTOL)

HSP 1 Score: 75.9 bits (185), Expect = 8.460e-14
Identity = 39/100 (39.00%), Postives = 60/100 (60.00%), Query Frame = 1
Query:   13 SNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEPVGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDAVQSL 312
            SN CRSP+AE  A +WL  R  +     EE G ++ S  I+  F+  GS AS+H I+VM+E + +D++ HR+ +L+     EA +I C++  H D V+ L
Sbjct:    9 SNTCRSPVAELFAVEWLKRRLDMDRAQQEEKGIRIHSAAITDVFDKQGSCASAHAISVMKE-YQIDLSQHRTRLLTAKMCEEADYIVCVSMGHRDKVREL 107          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1495.3556.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ78_ECTSI3.140e-7361.73LMWPc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5K5S6_9PHAE7.300e-7157.85LMWPc domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A1V9ZFN0_9STRA5.870e-1747.31Acid phosphatase n=1 Tax=Achlya hypogyna TaxID=120... [more]
A0A8K1FNX8_PYTOL7.320e-1740.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
K3WBP6_GLOUD7.790e-1643.01LMWPc domain-containing protein n=1 Tax=Globispora... [more]
A0A2D4BTC7_PYTIN2.410e-1538.14LMWPc domain-containing protein n=1 Tax=Pythium in... [more]
A0A482SI70_9ARCH9.800e-1552.50LMWPc domain-containing protein n=1 Tax=archaeon T... [more]
A0A3M6VKQ9_9STRA4.420e-1438.89LMWPc domain-containing protein n=1 Tax=Peronospor... [more]
A0A353P2V4_9BACT6.360e-1437.37Threonylcarbamoyl-AMP synthase n=2 Tax=Planctomyce... [more]
A0A8K1FI87_PYTOL8.460e-1439.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1495contigL-elsbetiae_contig1495:3912..4835 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score235.3
Seed ortholog evalue2.6e-59
Seed eggNOG ortholog2880.D7FQ78
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Low molecular weight phosphatase family
EggNOG OGs2S9R2@2759,COG0394@1
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionPhosphotyrosine protein phosphatase I superfamily
Ec32 orthologEc-01_007140.1
Exons2
Model size648
Cds size648
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.8040986-CDS-L-elsbetiae_contig1495:3911..44321622815603.8040986-CDS-L-elsbetiae_contig1495:3911..4432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 3912..4432 -
1691682985.5986583-CDS-L-elsbetiae_contig1495:3911..44321691682985.5986583-CDS-L-elsbetiae_contig1495:3911..4432Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 3912..4432 -
1622815603.8187017-CDS-L-elsbetiae_contig1495:4708..48351622815603.8187017-CDS-L-elsbetiae_contig1495:4708..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 4709..4835 -
1691682985.609498-CDS-L-elsbetiae_contig1495:4708..48351691682985.609498-CDS-L-elsbetiae_contig1495:4708..4835Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 4709..4835 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1495.3556.1prot_L-elsbetiae_contig1495.3556.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1495 3912..4835 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1495.3556.1

>prot_L-elsbetiae_contig1495.3556.1 ID=prot_L-elsbetiae_contig1495.3556.1|Name=mRNA_L-elsbetiae_contig1495.3556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=216bp
PTTKSNVCRSPIAEGLAKKWLSERHGVGVQDLEEIGYKVQSRGISTDFEP
VGSPASSHGITVMRENHGVDMTAHRSIMLSKADVLEATHIYCMAQRHHDA
VQSLEQQVMSNGEPSMRLSAASIASSHSVAGDGKKRQSSSPRAPVLISVF
EPEIPDPWHGTIGCYRECTDMITEAVKKALEEAVPLVVEDSPQQQQAGSP
ASTRDQEEDQSEPQS*
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mRNA from alignment at L-elsbetiae_contig1495:3912..4835-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1495.3556.1 ID=mRNA_L-elsbetiae_contig1495.3556.1|Name=mRNA_L-elsbetiae_contig1495.3556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=924bp|location=Sequence derived from alignment at L-elsbetiae_contig1495:3912..4835- (Laminarionema elsbetiae ELsaHSoW15)
CCGACGACGAAAAGCAACGTGTGCCGGTCTCCGATCGCGGAAGGGCTGGC GAAGAAGTGGCTGTCCGAAAGGCATGGTGTAGGGGTTCAAGATCTCGAAG AGATTGGCTACAAAGTGCAGTCCCGAGGTAAAAATGAAAATATGACACTG GACCAACACTGGACTACACTTGCGCGCCGGTAGAATCGATTTGGGATTGC TGCTTCCAAGCCTTTGGCATACATATCTACACATGAGATCTCACATCATT AGCTACAAATAAATGATGCGTCTTCCATCGAGCATGATACAGTTAGCTTT CAAGTTCGAGCTACCTGATACGATGAAGGGAAAAACGCACACACTGGACT CTGTACTCCCTCCAGTACTTTTTATCTCTACCCCCCGTCCCCTCTTGATG CAGGAATCTCCACTGACTTCGAACCTGTTGGATCCCCGGCAAGCTCTCAC GGGATCACGGTCATGCGGGAAAATCACGGCGTGGACATGACAGCTCATCG CTCGATCATGCTGTCCAAAGCCGATGTGCTCGAAGCGACGCATATCTACT GCATGGCTCAGCGCCACCATGACGCCGTGCAAAGCCTGGAGCAGCAGGTC ATGTCCAACGGTGAGCCTTCAATGAGGCTATCAGCAGCATCAATAGCATC CTCACATTCCGTTGCTGGAGATGGGAAGAAGAGGCAATCTTCTTCGCCCC GTGCTCCGGTCCTGATCTCCGTATTCGAGCCGGAAATTCCAGATCCTTGG CACGGAACGATAGGATGCTACCGAGAGTGCACGGATATGATAACCGAGGC CGTGAAAAAGGCCCTGGAAGAAGCCGTGCCGTTGGTTGTTGAAGACTCAC CGCAGCAGCAGCAAGCAGGCTCACCCGCAAGTACAAGAGACCAAGAAGAG GATCAGTCCGAACCGCAGTCATGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1495:3912..4835-

>mRNA_L-elsbetiae_contig1495.3556.1 ID=mRNA_L-elsbetiae_contig1495.3556.1|Name=mRNA_L-elsbetiae_contig1495.3556.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1296bp|location=Sequence derived from alignment at L-elsbetiae_contig1495:3912..4835- (Laminarionema elsbetiae ELsaHSoW15)
CCGACGACGAAAAGCAACGTGTGCCGGTCTCCGATCGCGGAAGGGCTGGC
GAAGAAGTGGCTGTCCGAAAGGCATGGTGTAGGGGTTCAAGATCTCGAAG
AGATTGGCTACAAAGTGCAGTCCCGAGCCGACGACGAAAAGCAACGTGTG
CCGGTCTCCGATCGCGGAAGGGCTGGCGAAGAAGTGGCTGTCCGAAAGGC
ATGGTGTAGGGGTTCAAGATCTCGAAGAGATTGGCTACAAAGTGCAGTCC
CGAGGAATCTCCACTGACTTCGAACCTGTTGGATCCCCGGCAAGCTCTCA
CGGGATCACGGTCATGCGGGAAAATCACGGCGTGGACATGACAGCTCATC
GCTCGATCATGCTGTCCAAAGCCGATGTGCTCGAAGCGACGCATATCTAC
TGCATGGCTCAGCGCCACCATGACGCCGTGCAAAGCCTGGAGCAGCAGGT
CATGTCCAACGGTGAGCCTTCAATGAGGCTATCAGCAGCATCAATAGCAT
CCTCACATTCCGTTGCTGGAGATGGGAAGAAGAGGCAATCTTCTTCGCCC
CGTGCTCCGGTCCTGATCTCCGTATTCGAGCCGGAAATTCCAGATCCTTG
GCACGGAACGATAGGATGCTACCGAGAGTGCACGGATATGATAACCGAGG
CCGTGAAAAAGGCCCTGGAAGAAGCCGTGCCGTTGGTTGTTGAAGACTCA
CCGCAGCAGCAGCAAGCAGGCTCACCCGCAAGTACAAGAGACCAAGAAGA
GGATCAGTCCGAACCGCAGTCATGAGAATCTCCACTGACTTCGAACCTGT
TGGATCCCCGGCAAGCTCTCACGGGATCACGGTCATGCGGGAAAATCACG
GCGTGGACATGACAGCTCATCGCTCGATCATGCTGTCCAAAGCCGATGTG
CTCGAAGCGACGCATATCTACTGCATGGCTCAGCGCCACCATGACGCCGT
GCAAAGCCTGGAGCAGCAGGTCATGTCCAACGGTGAGCCTTCAATGAGGC
TATCAGCAGCATCAATAGCATCCTCACATTCCGTTGCTGGAGATGGGAAG
AAGAGGCAATCTTCTTCGCCCCGTGCTCCGGTCCTGATCTCCGTATTCGA
GCCGGAAATTCCAGATCCTTGGCACGGAACGATAGGATGCTACCGAGAGT
GCACGGATATGATAACCGAGGCCGTGAAAAAGGCCCTGGAAGAAGCCGTG
CCGTTGGTTGTTGAAGACTCACCGCAGCAGCAGCAAGCAGGCTCACCCGC
AAGTACAAGAGACCAAGAAGAGGATCAGTCCGAACCGCAGTCATGA
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