mRNA_L-elsbetiae_contig1495.3555.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1495.3555.1
Unique NamemRNA_L-elsbetiae_contig1495.3555.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: D7FQ79_ECTSI (Possible haloacid dehalogenase-like hydrolase family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ79_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 2.110e-65
Identity = 100/112 (89.29%), Postives = 107/112 (95.54%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPGLLAKRYEAMGGRVTYFGKPHKEHY+TAV KMGLG DRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELG+DAKADKSTF LS +AL++ F+RE+VTPTWTMPLFAL
Sbjct:  202 MPGLLAKRYEAMGGRVTYFGKPHKEHYDTAVEKMGLGNDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGIDAKADKSTFNLSPDALERAFSRENVTPTWTMPLFAL 313          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A6T8NQS0_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8NQS0_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.070e-31
Identity = 57/114 (50.00%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELG--VDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPG +A+RYE+MGG+ TYFGKPH  H+ET + K+GL ++R+ HVGDSL HD+ GA +AG+ SVFI GGI  +ELG  +    D++       AL  +F  E  TPT  +PLF +
Sbjct:   10 MPGKIARRYESMGGKCTYFGKPHVPHFETCIRKLGLDRNRIAHVGDSLHHDVAGARAAGISSVFIVGGIHRDELGSTIGEMPDET-------ALVNLFQAEKQTPTHVLPLFQI 116          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A7R9WCP6_9STRA (Hypothetical protein n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9WCP6_9STRA)

HSP 1 Score: 110 bits (276), Expect = 2.320e-28
Identity = 54/122 (44.26%), Postives = 79/122 (64.75%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEEL------GVDAKADKSTFQLS----HEALDKVFARESVTPTWTMPLFAL 336
            MPG +A+RYE MGG VT FGKPH  H+E  + ++ L + RVVHVGDSL HD+ GA+ AG+D VF+ GG+  EEL      G+ A+  + +F +      E L ++F +E++ PT  +P+F +
Sbjct:   70 MPGKIARRYEEMGGDVTSFGKPHAAHFEACIRELQLDRSRVVHVGDSLHHDVAGANEAGVDCVFVTGGVHHEELMAWEETGMAARTSEESFPVGTMPDEEVLRELFRKENIFPTHVVPMFRM 191          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A8J9WZI5_PHATR (Hypothetical protein n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9WZI5_PHATR)

HSP 1 Score: 112 bits (279), Expect = 8.630e-28
Identity = 53/112 (47.32%), Postives = 75/112 (66.96%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPG +A+RYE +GG VT FGKPHKEH+E  V  +GL K++VVHVGDS+ HDI GA++ G+ S+ + GG+  EELG++  +         +AL+++F     TPT  +PL  L
Sbjct:  188 MPGKIAERYEQLGGSVTSFGKPHKEHFEACVRDLGLPKEKVVHVGDSIYHDIAGANATGISSILVVGGVHREELGIEVGSLPE-----RDALEQLFHTHGETPTHVVPLLKL 294          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A7S0C8U6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C8U6_9STRA)

HSP 1 Score: 111 bits (277), Expect = 2.850e-27
Identity = 53/112 (47.32%), Postives = 74/112 (66.07%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPG + +RYE+MGG+  YFGKPH  H+E  +  +GL ++RV HVGDSL HD+ GA+++G+ S+F+ GGI  E+LG        T    +EAL K+F +E  TPT  +PL  L
Sbjct:  214 MPGKIGQRYESMGGKCEYFGKPHVPHFEACLRDLGLDRNRVAHVGDSLHHDVAGANNSGIASIFVTGGIHREDLGSPELGTLPT----NEALQKLFKKEGQTPTHVIPLLRL 321          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A7S2K8W4_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2K8W4_9STRA)

HSP 1 Score: 108 bits (271), Expect = 8.190e-27
Identity = 54/113 (47.79%), Postives = 76/113 (67.26%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAG-GICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPG ++ RYE +GG+  +FGKPH+ H+E  + ++GL KDRVVHVGDSL HDIVGA+  G+ SVF+A  G+  +ELG++     +      +AL  +F R  + PT T+PLF L
Sbjct:  163 MPGKISARYEELGGKCAFFGKPHQPHFEACIEQLGLTKDRVVHVGDSLHHDIVGANDTGIASVFVASAGVHAKELGLNLGELPND-----DALTDLFTRHGIIPTHTVPLFRL 270          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A7S1TXA0_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TXA0_9STRA)

HSP 1 Score: 104 bits (260), Expect = 2.020e-26
Identity = 55/102 (53.92%), Postives = 68/102 (66.67%), Query Frame = 1
Query:    7 GLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPT 312
            G +AKRYE +GGRVT+FGKP+ + +E A+  M L K RV HVGDSL HDI GA++ G+DSVFIA GI G  L VD  +      L   AL  +FA E +TPT
Sbjct:   42 GAVAKRYEELGGRVTFFGKPNVDIFEEALLSMRLPKHRVAHVGDSLHHDIQGAANTGIDSVFIASGIHGNALNVDLSSTNEN--LKETALADLFAHEGLTPT 141          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A225UFV5_9STRA (HAD hydrolase protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225UFV5_9STRA)

HSP 1 Score: 102 bits (254), Expect = 5.810e-26
Identity = 51/108 (47.22%), Postives = 70/108 (64.81%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGL-GKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTM 321
            M G +AK YE MGG V YFGKP KEH+E  +    +  K +VVH+GDSL HDI GA + G+DS+FI+GGI  +EL V+A       ++  + LDK+  +  + PT+TM
Sbjct:    1 MGGGIAKLYEEMGGEVIYFGKPMKEHFEVCLRLASVTDKSKVVHIGDSLHHDIQGAENTGVDSIFISGGIHSKELDVNAWGSSEELRVKPDLLDKLLEKTQLDPTYTM 108          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A7S1B597_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1B597_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.170e-25
Identity = 54/115 (46.96%), Postives = 74/115 (64.35%), Query Frame = 1
Query:    1 MPGLLAKRYEAM---GGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARESVTPTWTMPLFAL 336
            MPG +A+RYE+    G  V +FGKPH  H+E  + ++GL + +V HVGDSL HDI GA++AG+DS+FIAGGI   EL  + + D     L  E L  +F +E  TPT  +P+F L
Sbjct:  188 MPGKIARRYESEEMEGNSVKWFGKPHASHFEACLRELGLDRSQVAHVGDSLHHDIAGANAAGVDSIFIAGGIHRGELQGEGE-DSGELLLDEERLQALFKKEGHTPTHVLPMFRL 301          
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Match: A0A1Z5JT37_FISSO (Uncharacterized protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JT37_FISSO)

HSP 1 Score: 104 bits (260), Expect = 7.150e-25
Identity = 53/111 (47.75%), Postives = 77/111 (69.37%), Query Frame = 1
Query:    1 MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAHDIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQL-SHEALDKVFARESVTPTWTMPLF 330
            MPG +A+RYE +GG+VT FGKP+KEH++  + ++ L  ++VVHVGDSL HDI+GA++AGLDS+F+AGG+   EL      D    ++ S E+  ++F R    PT  +PLF
Sbjct:  200 MPGTIAQRYEELGGKVTSFGKPNKEHFQACLRELELPAEKVVHVGDSLHHDIMGANAAGLDSIFVAGGVHRHEL------DNLPGEVPSRESCLELFERHGQFPTHVVPLF 304          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1495.3555.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQ79_ECTSI2.110e-6589.29Possible haloacid dehalogenase-like hydrolase fami... [more]
A0A6T8NQS0_9STRA3.070e-3150.00Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7R9WCP6_9STRA2.320e-2844.26Hypothetical protein n=1 Tax=Pseudictyota dubia Ta... [more]
A0A8J9WZI5_PHATR8.630e-2847.32Hypothetical protein n=2 Tax=Phaeodactylum tricorn... [more]
A0A7S0C8U6_9STRA2.850e-2747.32Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A7S2K8W4_9STRA8.190e-2747.79Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1TXA0_9STRA2.020e-2653.92Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A225UFV5_9STRA5.810e-2647.22HAD hydrolase protein n=1 Tax=Phytophthora megakar... [more]
A0A7S1B597_9STRA3.170e-2546.96Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A1Z5JT37_FISSO7.150e-2547.75Uncharacterized protein n=2 Tax=Fistulifera solari... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1495contigL-elsbetiae_contig1495:2177..3087 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score208.4
Seed ortholog evalue1.8e-51
Seed eggNOG ortholog2880.D7FQ79
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Haloacid dehalogenase-like hydrolase
EggNOG OGs2QU6A@2759,COG0647@1
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size339
Cds size339
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1495.3555.1prot_L-elsbetiae_contig1495.3555.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1495 2177..3087 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.7474477-CDS-L-elsbetiae_contig1495:2176..22481622815603.7474477-CDS-L-elsbetiae_contig1495:2176..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2177..2248 +
1691682985.5658867-CDS-L-elsbetiae_contig1495:2176..22481691682985.5658867-CDS-L-elsbetiae_contig1495:2176..2248Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2177..2248 +
1622815603.7595358-CDS-L-elsbetiae_contig1495:2403..24601622815603.7595358-CDS-L-elsbetiae_contig1495:2403..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2404..2460 +
1691682985.578985-CDS-L-elsbetiae_contig1495:2403..24601691682985.578985-CDS-L-elsbetiae_contig1495:2403..2460Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2404..2460 +
1622815603.7721286-CDS-L-elsbetiae_contig1495:2877..30871622815603.7721286-CDS-L-elsbetiae_contig1495:2877..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2878..3087 +
1691682985.5879645-CDS-L-elsbetiae_contig1495:2877..30871691682985.5879645-CDS-L-elsbetiae_contig1495:2877..3087Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1495 2878..3087 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1495.3555.1

>prot_L-elsbetiae_contig1495.3555.1 ID=prot_L-elsbetiae_contig1495.3555.1|Name=mRNA_L-elsbetiae_contig1495.3555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=113bp
MPGLLAKRYEAMGGRVTYFGKPHKEHYETAVAKMGLGKDRVVHVGDSLAH
DIVGASSAGLDSVFIAGGICGEELGVDAKADKSTFQLSHEALDKVFARES
VTPTWTMPLFAL*
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mRNA from alignment at L-elsbetiae_contig1495:2177..3087+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1495.3555.1 ID=mRNA_L-elsbetiae_contig1495.3555.1|Name=mRNA_L-elsbetiae_contig1495.3555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=911bp|location=Sequence derived from alignment at L-elsbetiae_contig1495:2177..3087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGGGCTGCTCGCCAAGCGGTACGAGGCGATGGGGGGACGAGTGAC CTACTTCGGGAAGCCACACAAGGTAACTAACAAGCGCGAATAACGGTGTT CCGCTGTCATCCCCGTCCGAGAGCACCGCATGTGATTTTGCTGCCTTTCC CGTGCCTCCCTCGCCTCCCTCTCACAGGCTCTTTGTTGTATCGATCCGAA TGAACCCGCATCTTTTCTTCTGGACAGGAGCACTACGAGACCGCCGTGGC GAAGATGGGCCTGGGCAAAGACAGGGTGGTGCATGTACGTTTCCCGCTTC TCCCGCGTTGTTCTTACGTACATAGGTTCCTACCGGTGCGAACGCTATAC AATCGCTAAACAAACTTCAAGTAAAATTTTTTGTGAGGGTCGCTTTTCTC GTGTGAGGAGCTTTGGAGCTCGTCGTTGTACTTCAGAGTACAAAACCCTA ACAACTCACTGCAATAGGCAAAACACGACTACTGTTGTAGGAATACGCTG TCAGCGTATTTCCGTGCCTTTGCCTTGTTAAAAGACGTGCAGGGTGCGTT TCATTCGGTCCAGGACGTTTCGTCTCCTTGCGTGTGTGCACCATACGTAT ACCACCACACGTGGGGTGAGAACTCGGCGTGCCCGCTGACATGCAACCCC CCTTCCGCCCGCCCACCCCACGTACGCTTTGCCAACATCGGGCGGGAGAA GGTGGGCGACAGCCTCGCCCACGACATTGTCGGCGCTTCGTCCGCCGGTT TAGACTCGGTGTTCATCGCGGGTGGCATCTGCGGCGAGGAGCTGGGTGTC GATGCCAAGGCCGATAAATCAACGTTTCAGCTGTCCCACGAAGCGCTCGA CAAGGTCTTCGCGCGGGAAAGCGTCACGCCCACGTGGACAATGCCGCTCT TTGCCTTGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1495:2177..3087+

>mRNA_L-elsbetiae_contig1495.3555.1 ID=mRNA_L-elsbetiae_contig1495.3555.1|Name=mRNA_L-elsbetiae_contig1495.3555.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=678bp|location=Sequence derived from alignment at L-elsbetiae_contig1495:2177..3087+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGGGGCTGCTCGCCAAGCGGTACGAGGCGATGGGGGGACGAGTGAC
CTACTTCGGGAAGCCACACAAGATGCCGGGGCTGCTCGCCAAGCGGTACG
AGGCGATGGGGGGACGAGTGACCTACTTCGGGAAGCCACACAAGGAGCAC
TACGAGACCGCCGTGGCGAAGATGGGCCTGGGCAAAGACAGGGTGGTGCA
TGAGCACTACGAGACCGCCGTGGCGAAGATGGGCCTGGGCAAAGACAGGG
TGGTGCATGTGGGCGACAGCCTCGCCCACGACATTGTCGGCGCTTCGTCC
GCCGGTTTAGACTCGGTGTTCATCGCGGGTGGCATCTGCGGCGAGGAGCT
GGGTGTCGATGCCAAGGCCGATAAATCAACGTTTCAGCTGTCCCACGAAG
CGCTCGACAAGGTCTTCGCGCGGGAAAGCGTCACGCCCACGTGGACAATG
CCGCTCTTTGCCTTGTGAGTGGGCGACAGCCTCGCCCACGACATTGTCGG
CGCTTCGTCCGCCGGTTTAGACTCGGTGTTCATCGCGGGTGGCATCTGCG
GCGAGGAGCTGGGTGTCGATGCCAAGGCCGATAAATCAACGTTTCAGCTG
TCCCACGAAGCGCTCGACAAGGTCTTCGCGCGGGAAAGCGTCACGCCCAC
GTGGACAATGCCGCTCTTTGCCTTGTGA
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