mRNA_L-elsbetiae_contig14941.3554.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14941.3554.1
Unique NamemRNA_L-elsbetiae_contig14941.3554.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14941.3554.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14941contigL-elsbetiae_contig14941:1660..3960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size240
Cds size231
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14941.3554.1prot_L-elsbetiae_contig14941.3554.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14941 1660..3951 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.6942697-CDS-L-elsbetiae_contig14941:1659..16931622815603.6942697-CDS-L-elsbetiae_contig14941:1659..1693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14941 1660..1693 +
1691682985.5322506-CDS-L-elsbetiae_contig14941:1659..16931691682985.5322506-CDS-L-elsbetiae_contig14941:1659..1693Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14941 1660..1693 +
1622815603.7048724-CDS-L-elsbetiae_contig14941:3754..39511622815603.7048724-CDS-L-elsbetiae_contig14941:3754..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14941 3755..3951 +
1691682985.541647-CDS-L-elsbetiae_contig14941:3754..39511691682985.541647-CDS-L-elsbetiae_contig14941:3754..3951Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14941 3755..3951 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815603.7174711-UTR-L-elsbetiae_contig14941:3951..39601622815603.7174711-UTR-L-elsbetiae_contig14941:3951..3960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14941 3952..3960 +
1691682985.5532815-UTR-L-elsbetiae_contig14941:3951..39601691682985.5532815-UTR-L-elsbetiae_contig14941:3951..3960Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14941 3952..3960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14941.3554.1

>prot_L-elsbetiae_contig14941.3554.1 ID=prot_L-elsbetiae_contig14941.3554.1|Name=mRNA_L-elsbetiae_contig14941.3554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=77bp
IQGGLVLWSAIGTPRNRELLDVWYLYDARGHVLGRFKRPHSLPSRKEEIT
REPYLDTDRRGPNLPYYLEPTELATL*
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mRNA from alignment at L-elsbetiae_contig14941:1660..3960+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14941.3554.1 ID=mRNA_L-elsbetiae_contig14941.3554.1|Name=mRNA_L-elsbetiae_contig14941.3554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2301bp|location=Sequence derived from alignment at L-elsbetiae_contig14941:1660..3960+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCAGGGTGGGCTGGTGTTATGGAGTGCAATAGGCACCCCTAGGAATAG
GGAATTATTAGATGTGTGATACCTGTACGATTCACGGGGCCACGTATTGG
GCCGCCCCAAGCGGTCCCCGCTCTCTGCCCTCCCTAATATAAGAACGAGA
TCTGGATATGGACCGGAGAGGAACCGAACCTCCCTTATTACTTTGAACCC
AAGGAATTAGCTACTCTGTGACACAGAAATAACAGTACTTGAGTCGCCGG
GAAGGTGATGGTGTAGGAAGAGCTAAATACATTTGTTTTCGCATTTCTTC
GCTTTTCTTCAGATAAAATCCCTTTTTCTAGCCATTATGCCAACCTGGGA
CGTTGTCACGGGAACAGTGCCCAACCTGAGACGTTGTGACGGATGAGGTT
GACCAGAGAAGGTACCCTGTGCCGTTTACATGTTCGAACGTTGCCTGTAG
TTTGCCAATCTTCCCGTCAGAAGGTACCCCTTTGGCCACCGGTGTGCGTT
TTGTGCAGTCCTTGTCGAGTGTGAGGTGGCCTCCAGCTCTAATCAAACTG
AAGTTTGAGGGGATGTGCATCGATGATTGCGATGCGGACAGCTGTAGATG
GCCTGCATCGCTCAAGAGGGTGTGGTTTGGGTTGGACAGTCTGATTGCCC
GTTAAAATCCGAAGCGATGGATTGGGCCAGAACATAGCACAAGTACGCTG
TAAGATGGGGGTGTGTCAGCTGCGTTGGTAGTACGATCGTTCGGACGGTC
TGTTTTTGCAATATAATGACCTTTTGCCAATCACACCCATGTTTATAGAA
GCACAATCTTTCACAAAAATCTTGATCTTTGAGCAAGATTTTTATTTCGT
CTGTTTATGGGAGAAAATCTTTAACAAAATCTTCCCCAAGATTTGATTCC
CGGCAAAATGTTTGCCTTTCGAGCAAATGTTTGGCAAAGATTTGACCATC
TGGCAGCTCGACAAAATCTTGCCCGGAGGCGGCGAGATTGTTTCTCCTGC
AGACTCCCGTCGCCAGCACCGACCACACTGCGCCCTCAATACTGAACGTG
ACGACTTTGTAAACTGCTCCGGATAACCCTAGAGCCTTCGCGTAAACGTA
CCACCCGCTCGTAAATGGCGGGAGCCAGTCAGTCGTGTGGGAAAAAAAAG
TCTGTGCAGGGTGTCTAGAGTGAAAGCATCGTTTGCGCCTTGAAACACCA
AAAAGCCGCCTGCTGCAAGGAGAGCACACGATGTCGCAGTCCAGCTCTCG
CCCGCTAGACCTTCTTGGCTTTCACCTCCATTAACCTGTCTCGTCGGGGT
GGACGTGGGTTGCCAGTGTGTGCCTTCAGTCGGCAGCAAATGGCATCGCC
GTGGAAACGAGTGTTCTGCGTGTTCGTTTTTTAGCGGGTGTGAACGAGCA
CTCTGTACTCAAGTAAAAACCAGAGGCTGGATTTTTCACGTTTTGCACAC
TCATGTCCACGGCGATGTGATTTGCTGCCGACTGAAGGCACCCACTGCCG
ACCCACGCCCATCCCTATATGAGATACGTTTGTGGAGGTGACAGGCAAGA
AGCTTTGACATGGGTAAATGGTCTAGCGGGCGAGAGCTGGTCTGCGATGT
AGTGAGCTTTCTCCGTCGGCGATGTTTTTGGCCGTTGCGGTAGCAAGTTG
CGGCGTGAAGTACGCCGCCGTTACTTATGTACGCCTAGGAACCGTTTTTG
TATGCCCAAGAGGGGCCTTCGGTACGATTCGGCGGCTAACATATCAACAC
GGAAGCTTTTCGTTTGGTTGGGGCCCTTTTTTGAGCTCGCTACGTTCTAG
TTTCGTGGCGCATTGATTGGTGGTTAGTCAGCATAAATCGTATGACAACC
GGCGAGAACAATTTCCATCGCGGTCGAAAAGTTCCAGAAATCAAGATTTT
TCCCCCACAGTGGCTGGACCAAAATGTAAAAGGTTGTACGAAAGTGGAGG
TAGGATAAGTACAAGCTGGTATTTTGATAAAATGGGTCGGAATTTCAGCA
AGGAAGAAAGATCGTAGGACTGTCAGTTAAAATAAAAAATAAATAAATAA
AAGGAGTCTAGAAAGAAGACGCACACATGTGATGGAGTGGAATAGGCACC
CCCAGGAATAGGGAATTATTAGATGTGTGGTACCTGTACGATGCACGGGG
CCACGTATTGGGCCGCTTCAAGAGGCCTCACTCTCTCCCCTCCCGGAAGG
AGGAAATAACACGAGAACCATATCTGGATACGGACCGGAGAGGACCGAAC
CTCCCTTATTACTTGGAACCCACGGAACTAGCTACTCTGTGAGACACACA
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14941:1660..3960+

>mRNA_L-elsbetiae_contig14941.3554.1 ID=mRNA_L-elsbetiae_contig14941.3554.1|Name=mRNA_L-elsbetiae_contig14941.3554.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=462bp|location=Sequence derived from alignment at L-elsbetiae_contig14941:1660..3960+ (Laminarionema elsbetiae ELsaHSoW15)
ATTCAGGGTGGGCTGGTGTTATGGAGTGCAATAGATTCAGGGTGGGCTGG
TGTTATGGAGTGCAATAGGCACCCCCAGGAATAGGGAATTATTAGATGTG
TGGTACCTGTACGATGCACGGGGCCACGTATTGGGCCGCTTCAAGAGGCC
TCACTCTCTCCCCTCCCGGAAGGAGGAAATAACACGAGAACCATATCTGG
ATACGGACCGGAGAGGACCGAACCTCCCTTATTACTTGGAACCCACGGAA
CTAGCTACTCTGTGAGCACCCCCAGGAATAGGGAATTATTAGATGTGTGG
TACCTGTACGATGCACGGGGCCACGTATTGGGCCGCTTCAAGAGGCCTCA
CTCTCTCCCCTCCCGGAAGGAGGAAATAACACGAGAACCATATCTGGATA
CGGACCGGAGAGGACCGAACCTCCCTTATTACTTGGAACCCACGGAACTA
GCTACTCTGTGA
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