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Homology
BLAST of mRNA_L-elsbetiae_contig1494.3551.1 vs. uniprot
Match: A0A6H5KJ14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJ14_9PHAE) HSP 1 Score: 363 bits (933), Expect = 6.010e-109 Identity = 266/570 (46.67%), Postives = 317/570 (55.61%), Query Frame = 3
Query: 123 MGPASHRLPVHLPTERSLEEVILARKMTASAELQFATSRHERYKSAGGEPSPEHGMLASPSSPANFLSHLPPEEYAREVSSRLGKRRRSKAIRRSTPDRTSF--SRGGSGSFALSQQHLRPLTGVSPPGTAQSHFTLADYAVEGARP-----MTGGWGPERGTKATRCVYNDSNGAHNGTDEKQQG---YFLTNKCNALAMRLEQVETQLLKERADGKQRLREAATASSFSRSVDSSNNSTNASYSCESAPKEKQPRPGGPSSSTRGRSPRNVGGSSRASSQAPRSSTADFDNR-------------GGNGG--GRVNSMGAG-VERKAGAHLMPRTVGSS---NSGGNDSRTHLSSGKGSAQAKQQRRPHSSGALS-GVMMPPDVVKAIRDGKRPQRSGGGKMDGEALHCEVVENEIADRFDVVTDGIEKLENVFSGAAQILEHRVHAITTIS---------------------------------------------------------------------------------SVIRMFLQRSRYLRCKEALRAWRTRHSLRVLQCMR 1499
M PASHR+ HLP ERSLEEVILARK+TASAE QFA SR+ERY SA GE P+ GMLASPSSPA+FLSHLP E Y REVSSR+G+ RR K++RR+TP R + S GG G F LSQQHLRPLTGVSPP TAQS F D+A E P MT P+RG T +N ++ A+N + + FLT+KCNALA RL+QVE QLL+ER DG++ L++ A ASSFS SV+S N N C S P+P G SRAS+ PR S + GG+GG GR N + G +E++AGA+ PRT SS N + S L GK +A + PH S +M+PPDVVKAI++G +P+R G KMD +ALHC+ VE EIA+RF+VV GIEKLE+VFSGAAQILEHRV AITTIS SVIRMFLQR RYLR KEALRAWRT +SLRVLQCMR
Sbjct: 5 MRPASHRIAAHLPAERSLEEVILARKITASAERQFANSRYERYTSAAGELGPQRGMLASPSSPASFLSHLPSEAYTREVSSRVGRHRRGKSLRRATPGRAAHRGSTGGEG-FGLSQQHLRPLTGVSPPSTAQSAFRPTDFAFESLCPTVRRSMTSSRSPKRGDGVTAWGFNGNDEANNSDSDLETNDRVIFLTDKCNALARRLQQVEAQLLRERPDGRELLKKEA-ASSFSPSVESFCNKDNR---CSS------PQPPG----------------SRASTADPRFSPRNXXXXXXXXXXXXXXXAFGGHGGRSGRKNDISEGDLEKRAGAYPTPRTAESSIDHNIKTHTSAAPLGRGKLNAHYQHNNDPHVSPRQGRAIMVPPDVVKAIKEGDKPRRDSGVKMDADALHCQKVEKEIAERFEVVAGGIEKLEDVFSGAAQILEHRVRAITTISRAQMVTAWGFSRIVCIPCVVLQCKEHHVERLPRQKLHKCTGLSKPSCLKFSLLLPGSLFDVHRLRMVQALSRPILLVASCSSVIRMFLQRCRYLRGKEALRAWRTNNSLRVLQCMR 547
BLAST of mRNA_L-elsbetiae_contig1494.3551.1 vs. uniprot
Match: D8LGW9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGW9_ECTSI) HSP 1 Score: 293 bits (749), Expect = 3.480e-91 Identity = 202/440 (45.91%), Postives = 232/440 (52.73%), Query Frame = 3
Query: 201 MTASAELQFATSRHERYKSAGGEPSPEHGMLASPSSPANFLSHLPPEEYAREVSSRLGKRRRSKAIRRSTPDRTSF--SRGGSGSFALSQQHLRPLTGVSPPGTAQSHFTLADYAVEGARPMTGGWGPERGTKATRCVYNDSNGAHNGTDEKQQGYFLTNKCNALAMRLEQVETQLLKERADGKQRLREAATASSFSRSVDSSNNSTNASYSCESAPKEKQPRPGGPSSSTRGRSPRNVGGSSRASSQAPRSSTADFDNRGGNGGGRVNSMGAG-VERKAGAHLMPRTVGSS---NSGGNDSRTHLSSGKGSAQAKQQRRPH-SSGALSGVMMPPDVVKAIRDGKRPQRSGGGKMDGEALHCEVVENEIADRFDVVTDGIEKLENVFSGAAQILEHRVHAITTISSVIRMFLQRSRYLRCKEALRAWRTRHSLRVLQCMR 1499
MTASAELQFA SR+ERY SAGGEP P+ GMLASPSSPA+FLSHLP E Y RE+SSR+G+ RR K +RR+TP R + S GG G F L QQHLRPLTGVSPP TAQS F ADY E RP AP S A F GG GR N + G +E++AGA+ PRT GSS NS + S L GK +A + PH S G G+M+PPD+VKAI++G +P+R+ G KMD +ALHCE VE EIA+RF+VV GIEKLE+VFSGAAQILEHRV AITTISSVIRMFLQR RYLR KEALRAWRT +SLRVLQCMR
Sbjct: 1 MTASAELQFANSRYERYTSAGGEPGPQRGMLASPSSPASFLSHLPSEAYTREISSRVGRHRRGKGLRRATPGRAAHRGSTGGEG-FGLFQQHLRPLTGVSPPSTAQSAFRPADYGFESLRPT------------------------------------------------------------------------------------------------------------------------------AP--SAAAFGGHGGRS-GRKNDISEGDLEKRAGAYPTPRTAGSSIDHNSKTHTSAAPLGRGKLNAHYQHNNDPHVSPGQGRGIMVPPDIVKAIKEGDKPRRNSGLKMDADALHCEKVEKEIAERFEVVAGGIEKLEDVFSGAAQILEHRVRAITTISSVIRMFLQRCRYLRGKEALRAWRTNNSLRVLQCMR 310
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Hectar predicted targeting category | other localisation |
Ec32 ortholog description | conserved unknown protein |
Ec32 ortholog | Ec-14_001610.1 |
Exons | 3 |
Model size | 1499 |
Cds size | 1377 |
Stop | 0 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815603.3108408-CDS-L-elsbetiae_contig1494:2943..3046 | 1622815603.3108408-CDS-L-elsbetiae_contig1494:2943..3046 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 2944..3046 - |
1691682985.2709072-CDS-L-elsbetiae_contig1494:2943..3046 | 1691682985.2709072-CDS-L-elsbetiae_contig1494:2943..3046 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 2944..3046 - |
1622815603.3221657-CDS-L-elsbetiae_contig1494:3832..4668 | 1622815603.3221657-CDS-L-elsbetiae_contig1494:3832..4668 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 3833..4668 - |
1691682985.2808285-CDS-L-elsbetiae_contig1494:3832..4668 | 1691682985.2808285-CDS-L-elsbetiae_contig1494:3832..4668 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 3833..4668 - |
1622815603.3466759-CDS-L-elsbetiae_contig1494:5170..5608 | 1622815603.3466759-CDS-L-elsbetiae_contig1494:5170..5608 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 5171..5608 - |
1691682985.291459-CDS-L-elsbetiae_contig1494:5170..5608 | 1691682985.291459-CDS-L-elsbetiae_contig1494:5170..5608 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1494 5171..5608 - |
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815603.3584669-UTR-L-elsbetiae_contig1494:5608..5730 | 1622815603.3584669-UTR-L-elsbetiae_contig1494:5608..5730 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1494 5609..5730 - |
1691682985.3040378-UTR-L-elsbetiae_contig1494:5608..5730 | 1691682985.3040378-UTR-L-elsbetiae_contig1494:5608..5730 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1494 5609..5730 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1494.3551.1 >prot_L-elsbetiae_contig1494.3551.1 ID=prot_L-elsbetiae_contig1494.3551.1|Name=mRNA_L-elsbetiae_contig1494.3551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=459bp
MGPASHRLPVHLPTERSLEEVILARKMTASAELQFATSRHERYKSAGGEP SPEHGMLASPSSPANFLSHLPPEEYAREVSSRLGKRRRSKAIRRSTPDRT SFSRGGSGSFALSQQHLRPLTGVSPPGTAQSHFTLADYAVEGARPMTGGW GPERGTKATRCVYNDSNGAHNGTDEKQQGYFLTNKCNALAMRLEQVETQL LKERADGKQRLREAATASSFSRSVDSSNNSTNASYSCESAPKEKQPRPGG PSSSTRGRSPRNVGGSSRASSQAPRSSTADFDNRGGNGGGRVNSMGAGVE RKAGAHLMPRTVGSSNSGGNDSRTHLSSGKGSAQAKQQRRPHSSGALSGV MMPPDVVKAIRDGKRPQRSGGGKMDGEALHCEVVENEIADRFDVVTDGIE KLENVFSGAAQILEHRVHAITTISSVIRMFLQRSRYLRCKEALRAWRTRH SLRVLQCMR back to topmRNA from alignment at L-elsbetiae_contig1494:2944..5730- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1494.3551.1 ID=mRNA_L-elsbetiae_contig1494.3551.1|Name=mRNA_L-elsbetiae_contig1494.3551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2787bp|location=Sequence derived from alignment at L-elsbetiae_contig1494:2944..5730- (Laminarionema elsbetiae ELsaHSoW15) CCCCGCCGTCTCTCTCCCTTTCTCTCTCTTTTCTCTCCGTCTTTCTTTGC
GGAGTATCCATGGGGTTTGTCTCTTAATCTACGGCGCCATAACTTCGTCG
AAACAGAGCCCTATGTACGAAAATGGGTCCTGCTTCGCATCGGCTTCCCG
TCCACCTCCCTACTGAAAGGAGCCTCGAGGAAGTGATCCTCGCGAGAAAA
ATGACTGCCTCTGCAGAGTTGCAGTTCGCCACCAGCAGGCATGAGCGCTA
CAAGTCAGCTGGCGGTGAACCGAGCCCTGAACATGGCATGCTGGCGTCCC
CGTCTTCCCCCGCGAACTTTCTGTCCCACCTCCCTCCCGAAGAATACGCC
AGAGAGGTTTCGAGCAGGCTCGGGAAGCGCCGGCGTAGCAAAGCGATTCG
ACGGTCAACTCCAGATCGGACGAGCTTCAGCCGTGGAGGCAGCGGGAGCT
TTGCCCTATCTCAACAGCATTTACGACCGCTGACCGGCGTATCGCCGCCA
GGGACGGCACAGTCTCATTTCACCCTGGCGGATTATGCGGTCGAGGGTGC
ACGACCGATGGTGAGCAAAGTCAACGTATGTAGATGTCGCCAGGAGACTA
CTGCTACACCTCAAGCACAACAGAGCCTGAGCGGCCGCGTTGAGCGAATA
AACAGCGGGCAATTAGTGTGTGTTCTTCGACACGTTCGGACAGTGAGATA
GTTGGACAGTCGTTAGTCTCCCCAAGCCAAGCAACAAACACTGCTTGCTG
TGTTGATCGCTTAGATATTAGACTATCTGCCCTAACCCCCGCCATGAACT
GCCCTATGTACAGCAGGACGGTGCTTTGGTTGGGAATACTTGCACTTCAT
CGTGCGGCCGTTCCTTGTCGAGAAAATGAGCACCTCTTTGTACCCCTGAT
GGCCAACAGCCCTCCTTGGAATTCCTCTGGATGTACAAAACCTGTGCAGA
TAATATCTAGAGATTTCGTGTACCTCGTACCCTGGTCGACCAAGCATAAC
GACGGCAATCAGATACAATTTACCTTCATGGTTCAAGCTCAAACACTTAC
GTTCGATCACAGACGGGCGGCTGGGGCCCTGAGCGGGGAACGAAAGCAAC
GAGGTGTGTCTACAACGACAGCAACGGCGCACACAACGGCACCGACGAGA
AACAGCAGGGATATTTTCTCACAAACAAGTGCAACGCTCTCGCGATGAGG
CTTGAGCAAGTTGAGACGCAGCTGCTCAAGGAGCGCGCCGACGGGAAGCA
ACGCCTGCGCGAAGCAGCAACAGCTTCGTCGTTTTCTCGATCTGTCGACT
CGTCCAACAACAGCACCAATGCGAGCTACAGCTGCGAATCAGCGCCAAAA
GAGAAGCAACCCCGCCCGGGCGGACCCTCTTCTAGCACCCGTGGTCGTTC
TCCGAGAAATGTAGGCGGATCTTCTCGTGCGTCGTCACAAGCACCACGAT
CATCCACTGCAGATTTCGACAACCGTGGTGGCAACGGGGGTGGTAGAGTC
AACAGCATGGGGGCAGGGGTAGAACGGAAGGCGGGAGCGCACCTGATGCC
AAGGACAGTCGGAAGTAGCAACAGCGGCGGCAACGACAGCAGGACGCACC
TTTCGTCGGGGAAAGGATCCGCACAGGCAAAACAACAGCGGCGGCCTCAC
TCATCAGGCGCCCTCTCAGGGGTTATGATGCCTCCCGATGTTGTCAAAGC
GATAAGGGACGGGAAGAGGCCACAGAGGAGCGGCGGTGGCAAGATGGACG
GGGAGGCTCTTCACTGCGAGGTTGTCGAGAATGAGATCGCCGACCGCTTC
GACGTCGTGACAGACGGCATTGAAAAGCTTGAGAATGTTTTCAGCGGCGC
AGCGCAGATATTGGAGCACCGGGTCCACGCAATCACGACCATCAGCAGGT
ACTGTCTGCAGTTGTGTTAACCTGCGATGTGAGTCCGCGCGGTGTCGCTA
AAGAACCTTGCGCTTTCTCCGCTTCCTGTGTTGTTAGCTATGTGTTGTGC
TTTCGTACGTTGTGTGTTAGAGAGAAAAAATATCCCTCCCAATCCTGGCT
ATTGCCTTATCACCTACCACTAATATTGTATGTTCTCCTCATTCTCCTCA
AAGCAGTAACCCACATATATTAAACCAGCATTTTGATTTACTTCAACAAT
GCGATGTGTTCCTATTTTGAAGTAGATGGCAACATTACGGCATCACGGCG
GGCATCTACCCGCCGGAATACTTGTTGACCGACCTCGCAAATCTTTGCAG
GGGAGATGTTGAACTCTTCTGATATCTTAGGTTGCTTTTCCGCTCGCTTC
GCCAAATATTACGTCATTGCATGGAATACCGTTTGAACACCATATCGAGT
CCTTGCTCTAGTGTGGGGTAGGTTCCATCTTTGATTCATTGTTTATTTTT
AGAAAAAAGAGGGAGCATCGTTCCAGAGTGTGTGAAACTACTACCTTAGT
TAGACACTCTGTTCTTCTTCGACGGGTACGCAAGTTGTCTCGTCTCCCAC
GACGAGGTACATCTTGCTGGGTGCCTCGCCAAGAAGGCATAGCAGGAGAC
ACGAGCGAAAGGCGTGCCCATTTGATCTTCGCTCGTTGCTTTCCTTAACG
TCTGTTTGCACTCTGAAGCACAGCCGTTAGGCGATCCAACGGCTCCCCGC
CACGTGCCTGCCTAATTTCCGTCACATGCTTCAGCGTTATCCGCATGTTT
CTTCAGAGGAGCCGCTATCTTCGATGCAAGGAAGCTCTCAGGGCTTGGCG
CACCAGGCACAGCTTGCGCGTGCTGCAGTGCATGCGT back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1494:2944..5730- >mRNA_L-elsbetiae_contig1494.3551.1 ID=mRNA_L-elsbetiae_contig1494.3551.1|Name=mRNA_L-elsbetiae_contig1494.3551.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2754bp|location=Sequence derived from alignment at L-elsbetiae_contig1494:2944..5730- (Laminarionema elsbetiae ELsaHSoW15) ATGGGTCCTGCTTCGCATCGGCTTCCCGTCCACCTCCCTACTGAAAGGAG CCTCGAGGAAGTGATCCTCGCGAGAAAAATGACTGCCTCTGCAGAGTTGC AGTTCGCCACCAGCAGGCATGAGCGCTACAAGTCAGCTGGCGGTGAACCG AGCCCTGAACATGGCATGCTGGCGTCCCCGTCTTCCCCCGCGAACTTTCT GTCCCACCTCCCTCCCGAAGAATACGCCAGAGAGGTTTCGAGCAGGCTCG GGAAGCGCCGGCGTAGCAAAGCGATTCGACGGTCAACTCCAGATCGGACG AGCTTCAGCCGTGGAGGCAGCGGGAGCTTTGCCCTATCTCAACAGCATTT ACGACCGCTGACCGGCGTATCGCCGCCAGGGACGGCACAGTCTCATTTCA CCCTGGCGGATTATGCGGTCGAGGGTGCACGACCGATGATGGGTCCTGCT TCGCATCGGCTTCCCGTCCACCTCCCTACTGAAAGGAGCCTCGAGGAAGT GATCCTCGCGAGAAAAATGACTGCCTCTGCAGAGTTGCAGTTCGCCACCA GCAGGCATGAGCGCTACAAGTCAGCTGGCGGTGAACCGAGCCCTGAACAT GGCATGCTGGCGTCCCCGTCTTCCCCCGCGAACTTTCTGTCCCACCTCCC TCCCGAAGAATACGCCAGAGAGGTTTCGAGCAGGCTCGGGAAGCGCCGGC GTAGCAAAGCGATTCGACGGTCAACTCCAGATCGGACGAGCTTCAGCCGT GGAGGCAGCGGGAGCTTTGCCCTATCTCAACAGCATTTACGACCGCTGAC CGGCGTATCGCCGCCAGGGACGGCACAGTCTCATTTCACCCTGGCGGATT ATGCGGTCGAGGGTGCACGACCGATGACGGGCGGCTGGGGCCCTGAGCGG GGAACGAAAGCAACGAGGTGTGTCTACAACGACAGCAACGGCGCACACAA CGGCACCGACGAGAAACAGCAGGGATATTTTCTCACAAACAAGTGCAACG CTCTCGCGATGAGGCTTGAGCAAGTTGAGACGCAGCTGCTCAAGGAGCGC GCCGACGGGAAGCAACGCCTGCGCGAAGCAGCAACAGCTTCGTCGTTTTC TCGATCTGTCGACTCGTCCAACAACAGCACCAATGCGAGCTACAGCTGCG AATCAGCGCCAAAAGAGAAGCAACCCCGCCCGGGCGGACCCTCTTCTAGC ACCCGTGGTCGTTCTCCGAGAAATGTAGGCGGATCTTCTCGTGCGTCGTC ACAAGCACCACGATCATCCACTGCAGATTTCGACAACCGTGGTGGCAACG GGGGTGGTAGAGTCAACAGCATGGGGGCAGGGGTAGAACGGAAGGCGGGA GCGCACCTGATGCCAAGGACAGTCGGAAGTAGCAACAGCGGCGGCAACGA CAGCAGGACGCACCTTTCGTCGGGGAAAGGATCCGCACAGGCAAAACAAC AGCGGCGGCCTCACTCATCAGGCGCCCTCTCAGGGGTTATGATGCCTCCC GATGTTGTCAAAGCGATAAGGGACGGGAAGAGGCCACAGAGGAGCGGCGG TGGCAAGATGGACGGGGAGGCTCTTCACTGCGAGGTTGTCGAGAATGAGA TCGCCGACCGCTTCGACGTCGTGACAGACGGCATTGAAAAGCTTGAGAAT GTTTTCAGCGGCGCAGCGCAGATATTGGAGCACCGGGTCCACGCAATCAC GACCATCAGCAGACGGGCGGCTGGGGCCCTGAGCGGGGAACGAAAGCAAC GAGGTGTGTCTACAACGACAGCAACGGCGCACACAACGGCACCGACGAGA AACAGCAGGGATATTTTCTCACAAACAAGTGCAACGCTCTCGCGATGAGG CTTGAGCAAGTTGAGACGCAGCTGCTCAAGGAGCGCGCCGACGGGAAGCA ACGCCTGCGCGAAGCAGCAACAGCTTCGTCGTTTTCTCGATCTGTCGACT CGTCCAACAACAGCACCAATGCGAGCTACAGCTGCGAATCAGCGCCAAAA GAGAAGCAACCCCGCCCGGGCGGACCCTCTTCTAGCACCCGTGGTCGTTC TCCGAGAAATGTAGGCGGATCTTCTCGTGCGTCGTCACAAGCACCACGAT CATCCACTGCAGATTTCGACAACCGTGGTGGCAACGGGGGTGGTAGAGTC AACAGCATGGGGGCAGGGGTAGAACGGAAGGCGGGAGCGCACCTGATGCC AAGGACAGTCGGAAGTAGCAACAGCGGCGGCAACGACAGCAGGACGCACC TTTCGTCGGGGAAAGGATCCGCACAGGCAAAACAACAGCGGCGGCCTCAC TCATCAGGCGCCCTCTCAGGGGTTATGATGCCTCCCGATGTTGTCAAAGC GATAAGGGACGGGAAGAGGCCACAGAGGAGCGGCGGTGGCAAGATGGACG GGGAGGCTCTTCACTGCGAGGTTGTCGAGAATGAGATCGCCGACCGCTTC GACGTCGTGACAGACGGCATTGAAAAGCTTGAGAATGTTTTCAGCGGCGC AGCGCAGATATTGGAGCACCGGGTCCACGCAATCACGACCATCAGCAGCG TTATCCGCATGTTTCTTCAGAGGAGCCGCTATCTTCGATGCAAGGAAGCT CTCAGGGCTTGGCGCACCAGGCACAGCTTGCGCGTGCTGCAGTGCATGCG TCGTTATCCGCATGTTTCTTCAGAGGAGCCGCTATCTTCGATGCAAGGAA GCTCTCAGGGCTTGGCGCACCAGGCACAGCTTGCGCGTGCTGCAGTGCAT GCGT back to top
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