mRNA_L-elsbetiae_contig14888.3524.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14888.3524.1
Unique NamemRNA_L-elsbetiae_contig14888.3524.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14888.3524.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 83.2 bits (204), Expect = 5.640e-16
Identity = 61/120 (50.83%), Postives = 69/120 (57.50%), Query Frame = -3 
Query:    3 MERAPVSTVARVSTVTKRKPRAASKGKAKAGKATAASTPGNKAAPKVRTAGKQGQTRKRLQKRVDSTEYARVLEQAWD-DCVAEFMENSRDEVDRKAEEFEGTCPRAKNEPPHSIASIPL 359
            MERAPVSTVA   T TKRKPRAASKGKAKA         GN    +VR              RV + EYAR+LE   + D +  F+E SR +   KA+ FE TCPR  NEPP SI SIPL
Sbjct:  630 MERAPVSTVANPITATKRKPRAASKGKAKAXXXXXXXXAGNVRKRRVRKPA-----------RVVAKEYARILEDVLNSDEMGTFVEASRAKAAEKAKHFENTCPRTPNEPPSSITSIPL 738
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14888.3524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPM1_ECTSI5.640e-1650.83PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14888contigL-elsbetiae_contig14888:3858..4254 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size397
Cds size372
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.8600574-CDS-L-elsbetiae_contig14888:3857..42291622815600.8600574-CDS-L-elsbetiae_contig14888:3857..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 3858..4229 +
1691682983.8543944-CDS-L-elsbetiae_contig14888:3857..42291691682983.8543944-CDS-L-elsbetiae_contig14888:3857..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 3858..4229 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.8702202-UTR-L-elsbetiae_contig14888:4229..42541622815600.8702202-UTR-L-elsbetiae_contig14888:4229..4254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14888 4230..4254 +
1691682983.8706756-UTR-L-elsbetiae_contig14888:4229..42541691682983.8706756-UTR-L-elsbetiae_contig14888:4229..4254Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14888 4230..4254 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14888.3524.1prot_L-elsbetiae_contig14888.3524.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14888 3858..4229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14888.3524.1

>prot_L-elsbetiae_contig14888.3524.1 ID=prot_L-elsbetiae_contig14888.3524.1|Name=mRNA_L-elsbetiae_contig14888.3524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=124bp
MRGIDAIEWGGSFFARGHVPSNSSAFRSTSSLLFSINSATQSSQACSRTR
AYSVESTLFCSRFLVCPCLPAVRTLGAALFPGVEAAVALPALALPFDAAR
GFRLVTVLTLATVDTGARSIGCG*
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mRNA from alignment at L-elsbetiae_contig14888:3858..4254+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14888.3524.1 ID=mRNA_L-elsbetiae_contig14888.3524.1|Name=mRNA_L-elsbetiae_contig14888.3524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=397bp|location=Sequence derived from alignment at L-elsbetiae_contig14888:3858..4254+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGGGATCGATGCGATTGAATGGGGCGGCTCATTTTTCGCACGAGG
ACACGTGCCCTCGAACTCTTCCGCTTTTCGGTCGACTTCATCCCTGCTGT
TCTCCATAAACTCGGCAACACAGTCATCCCAAGCCTGTTCGAGAACACGA
GCATATTCCGTCGAGTCGACCCTCTTTTGTAGCCGTTTCCTAGTTTGCCC
CTGTTTGCCCGCTGTGCGTACCTTGGGAGCCGCCTTATTCCCAGGCGTCG
AAGCAGCCGTGGCCTTGCCAGCTTTGGCCTTGCCCTTCGATGCAGCGCGC
GGTTTCCGTTTGGTGACCGTGCTCACCCTCGCTACCGTCGACACGGGAGC
CCGTTCCATCGGCTGCGGTTGAGTCGACCCCGGTCCGTCCACGTTCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14888:3858..4254+

>mRNA_L-elsbetiae_contig14888.3524.1 ID=mRNA_L-elsbetiae_contig14888.3524.1|Name=mRNA_L-elsbetiae_contig14888.3524.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=744bp|location=Sequence derived from alignment at L-elsbetiae_contig14888:3858..4254+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAGAGGGATCGATGCGATTGAATGGGGCGGCTCATTTTTCGCACGAGG
ACACGTGCCCTCGAACTCTTCCGCTTTTCGGTCGACTTCATCCCTGCTGT
TCTCCATAAACTCGGCAACACAGTCATCCCAAGCCTGTTCGAGAACACGA
GCATATTCCGTCGAGTCGACCCTCTTTTGTAGCCGTTTCCTAGTTTGCCC
CTGTTTGCCCGCTGTGCGTACCTTGGGAGCCGCCTTATTCCCAGGCGTCG
AAGCAGCCGTGGCCTTGCCAGCTTTGGCCTTGCCCTTCGATGCAGCGCGC
GGTTTCCGTTTGGTGACCGTGCTCACCCTCGCTACCGTCGACACGGGAGC
CCGTTCCATCGGCTGCGGTTGAATGAGAGGGATCGATGCGATTGAATGGG
GCGGCTCATTTTTCGCACGAGGACACGTGCCCTCGAACTCTTCCGCTTTT
CGGTCGACTTCATCCCTGCTGTTCTCCATAAACTCGGCAACACAGTCATC
CCAAGCCTGTTCGAGAACACGAGCATATTCCGTCGAGTCGACCCTCTTTT
GTAGCCGTTTCCTAGTTTGCCCCTGTTTGCCCGCTGTGCGTACCTTGGGA
GCCGCCTTATTCCCAGGCGTCGAAGCAGCCGTGGCCTTGCCAGCTTTGGC
CTTGCCCTTCGATGCAGCGCGCGGTTTCCGTTTGGTGACCGTGCTCACCC
TCGCTACCGTCGACACGGGAGCCCGTTCCATCGGCTGCGGTTGA
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