mRNA_L-elsbetiae_contig14888.3523.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14888.3523.1
Unique NamemRNA_L-elsbetiae_contig14888.3523.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Match: D8LPM1_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPM1_ECTSI)

HSP 1 Score: 201 bits (511), Expect = 4.890e-57
Identity = 105/148 (70.95%), Postives = 126/148 (85.14%), Query Frame = 1 
Query:    1 LAKEIEFEKMKFEFKEWKRKNAAGGGGATPATVAPAPTGAAPVAAAAADEKPKKIKRGQILGKSVKYKEKPGKTIEDEEREGLKEVVEAIKSAWQRAKKNQSAKSRGGEVDPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWFR 444
            + +EIE E+     ++ K +NA+ GGGATPATVAPAPTGAA +AAA A+EKPKKIKRGQI G+SVKY+ KPG+ I+D+ER+GLKEVVE IK AW+RAKK QSAKS+  +VDPVYHYMSLPSNRNA+LPMVWTLQEIDA +F PG+WFR
Sbjct: 1532 VDREIEMERKIKLLRQLKTENASCGGGATPATVAPAPTGAAHLAAAGAEEKPKKIKRGQIPGQSVKYEPKPGRPIKDKERDGLKEVVEEIKGAWERAKKRQSAKSKEHKVDPVYHYMSLPSNRNAKLPMVWTLQEIDADEFQPGDWFR 1679
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BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Match: A0A6H5JTS7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTS7_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 4.620e-5
Identity = 21/37 (56.76%), Postives = 27/37 (72.97%), Query Frame = 1 
Query:  331 DPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWF 441
            D VY Y+  P++RN +L MVWTLQ+I+ A F PG WF
Sbjct:  397 DAVYPYIIRPAHRNGKLHMVWTLQDIETADFQPGEWF 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14888.3523.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LPM1_ECTSI4.890e-5770.95PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JTS7_9PHAE4.620e-556.76Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14888contigL-elsbetiae_contig14888:695..1272 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size445
Cds size417
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14888.3523.1prot_L-elsbetiae_contig14888.3523.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14888 695..1245 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.9025817-CDS-L-elsbetiae_contig14888:694..9251622815600.9025817-CDS-L-elsbetiae_contig14888:694..925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 695..925 -
1691682983.8812995-CDS-L-elsbetiae_contig14888:694..9251691682983.8812995-CDS-L-elsbetiae_contig14888:694..925Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 695..925 -
1622815600.9131343-CDS-L-elsbetiae_contig14888:1059..12451622815600.9131343-CDS-L-elsbetiae_contig14888:1059..1245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 1060..1245 -
1691682983.890888-CDS-L-elsbetiae_contig14888:1059..12451691682983.890888-CDS-L-elsbetiae_contig14888:1059..1245Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14888 1060..1245 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.927152-UTR-L-elsbetiae_contig14888:1245..12721622815600.927152-UTR-L-elsbetiae_contig14888:1245..1272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14888 1246..1272 -
1691682983.8993216-UTR-L-elsbetiae_contig14888:1245..12721691682983.8993216-UTR-L-elsbetiae_contig14888:1245..1272Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14888 1246..1272 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14888.3523.1

>prot_L-elsbetiae_contig14888.3523.1 ID=prot_L-elsbetiae_contig14888.3523.1|Name=mRNA_L-elsbetiae_contig14888.3523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=139bp
MKFEFKEWKRKNAAGGGGATPATVAPAPTGAAPVAAAAADEKPKKIKRGQ
ILGKSVKYKEKPGKTIEDEEREGLKEVVEAIKSAWQRAKKNQSAKSRGGE
VDPVYHYMSLPSNRNAQLPMVWTLQEIDAAKFNPGNWFR
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mRNA from alignment at L-elsbetiae_contig14888:695..1272-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14888.3523.1 ID=mRNA_L-elsbetiae_contig14888.3523.1|Name=mRNA_L-elsbetiae_contig14888.3523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=578bp|location=Sequence derived from alignment at L-elsbetiae_contig14888:695..1272- (Laminarionema elsbetiae ELsaHSoW15)
CTCGCGAAAGAAATTGAGTTCGAGAAAATGAAATTCGAGTTCAAGGAGTG
GAAGAGAAAAAACGCAGCCGGTGGTGGGGGGGCTACACCTGCTACAGTGG
CGCCCGCGCCTACCGGGGCTGCGCCTGTGGCCGCTGCTGCCGCCGATGAG
AAGCCGAAGAAAATCAAACGGGGACAGATACTGGGCAAGAGCGTGAAGTA
CAAGGAAAAACCGGTAAGCGCGTACGCTCGAGCCATGACACTTATGGATT
GGTTTGTTAATACGGTAACTTTGGGGGCGTCAATACAATGTCATCGGTGT
CATCTGACAACACCAGCGTTGCGCATTGCTTGATGAATCGACCACAGGGG
AAGACAATCGAGGACGAAGAACGCGAGGGGTTGAAGGAGGTGGTGGAAGC
GATCAAGAGCGCCTGGCAGAGGGCCAAGAAGAACCAATCGGCAAAAAGCA
GGGGGGGTGAAGTAGATCCCGTGTATCACTACATGAGTTTGCCATCAAAC
CGTAACGCGCAGCTACCTATGGTGTGGACGTTGCAAGAGATAGACGCAGC
CAAGTTCAATCCGGGGAATTGGTTTAGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14888:695..1272-

>mRNA_L-elsbetiae_contig14888.3523.1 ID=mRNA_L-elsbetiae_contig14888.3523.1|Name=mRNA_L-elsbetiae_contig14888.3523.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=834bp|location=Sequence derived from alignment at L-elsbetiae_contig14888:695..1272- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAATTCGAGTTCAAGGAGTGGAAGAGAAAAAACGCAGCCGGTGGTGG
GGGGGCTACACCTGCTACAGTGGCGCCCGCGCCTACCGGGGCTGCGCCTG
TGGCCGCTGCTGCCGCCGATGAGAAGCCGAAGAAAATCAAACGGGGACAG
ATACTGGGCAAGAGCGTGAAGTACAAGGAAAAACCGATGAAATTCGAGTT
CAAGGAGTGGAAGAGAAAAAACGCAGCCGGTGGTGGGGGGGCTACACCTG
CTACAGTGGCGCCCGCGCCTACCGGGGCTGCGCCTGTGGCCGCTGCTGCC
GCCGATGAGAAGCCGAAGAAAATCAAACGGGGACAGATACTGGGCAAGAG
CGTGAAGTACAAGGAAAAACCGGGGAAGACAATCGAGGACGAAGAACGCG
AGGGGTTGAAGGAGGTGGTGGAAGCGATCAAGAGCGCCTGGCAGAGGGCC
AAGAAGAACCAATCGGCAAAAAGCAGGGGGGGTGAAGTAGATCCCGTGTA
TCACTACATGAGTTTGCCATCAAACCGTAACGCGCAGCTACCTATGGTGT
GGACGTTGCAAGAGATAGACGCAGCCAAGTTCAATCCGGGGAATTGGTTT
AGGGGGAAGACAATCGAGGACGAAGAACGCGAGGGGTTGAAGGAGGTGGT
GGAAGCGATCAAGAGCGCCTGGCAGAGGGCCAAGAAGAACCAATCGGCAA
AAAGCAGGGGGGGTGAAGTAGATCCCGTGTATCACTACATGAGTTTGCCA
TCAAACCGTAACGCGCAGCTACCTATGGTGTGGACGTTGCAAGAGATAGA
CGCAGCCAAGTTCAATCCGGGGAATTGGTTTAGG
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