mRNA_L-elsbetiae_contig14885.3521.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14885.3521.1
Unique NamemRNA_L-elsbetiae_contig14885.3521.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14885.3521.1 vs. uniprot
Match: D7G5P0_ECTSI (SHSP domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5P0_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 9.090e-41
Identity = 99/168 (58.93%), Postives = 115/168 (68.45%), Query Frame = 1 
Query:    7 SNTHLAALLALLLGTAAQSDAHRYRTHHNHN---GRRLFH-PSF---ETATAEAFRPFQ-APPRGSGLFTSAGPLVDVFQEVMSDVKRAARELSEPTPAAAGTPPHEVAETEDAAILTADLPGCKKEDVDAQISEDGGTKTLTIRAVRKK------SLLSRSNPPETS 468
            +NTHLA LLALLLGT  Q + HRYRTH  H    GRRLF  P+    E     AFRPF+   PRG    +SAGPL+DVFQ+VM ++K+ A ELS+PT   A +PP+EV ET DAA L  DLPGCKKEDVDAQ+SED GTKTLTI AVRKK         S S+PP+TS
Sbjct:    5 TNTHLA-LLALLLGTQ-QGECHRYRTHGGHXXXXGRRLFQLPTVVNNEIVDTGAFRPFRHVQPRGRPHVSSAGPLMDVFQDVMGEIKKVACELSDPT-TEARSPPYEVLETPDAATLIVDLPGCKKEDVDAQVSEDSGTKTLTITAVRKKPRQADGDARSPSSPPDTS 169
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14885.3521.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G5P0_ECTSI9.090e-4158.93SHSP domain-containing protein n=2 Tax=Ectocarpus ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14885contigL-elsbetiae_contig14885:2462..4348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-12_008570.1
Exons2
Model size549
Cds size549
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.7663941-CDS-L-elsbetiae_contig14885:2461..27081622815600.7663941-CDS-L-elsbetiae_contig14885:2461..2708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14885 2462..2708 +
1691682983.8161778-CDS-L-elsbetiae_contig14885:2461..27081691682983.8161778-CDS-L-elsbetiae_contig14885:2461..2708Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14885 2462..2708 +
1622815600.7780535-CDS-L-elsbetiae_contig14885:4046..43481622815600.7780535-CDS-L-elsbetiae_contig14885:4046..4348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14885 4047..4348 +
1691682983.8258836-CDS-L-elsbetiae_contig14885:4046..43481691682983.8258836-CDS-L-elsbetiae_contig14885:4046..4348Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14885 4047..4348 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14885.3521.1prot_L-elsbetiae_contig14885.3521.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14885 2462..4348 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14885.3521.1

>prot_L-elsbetiae_contig14885.3521.1 ID=prot_L-elsbetiae_contig14885.3521.1|Name=mRNA_L-elsbetiae_contig14885.3521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=183bp
MTSNTHLAALLALLLGTAAQSDAHRYRTHHNHNGRRLFHPSFETATAEAF
RPFQAPPRGSGLFTSAGPLVDVFQEVMSDVKRAARELSEPTPAAAGTPPH
EVAETEDAAILTADLPGCKKEDVDAQISEDGGTKTLTIRAVRKKSLLSRS
NPPETSAAATAAGPAEPGKDTPPGSASSSSSSS
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mRNA from alignment at L-elsbetiae_contig14885:2462..4348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14885.3521.1 ID=mRNA_L-elsbetiae_contig14885.3521.1|Name=mRNA_L-elsbetiae_contig14885.3521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1887bp|location=Sequence derived from alignment at L-elsbetiae_contig14885:2462..4348+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCAAACACCCACCTCGCAGCGCTGCTGGCCCTTCTTCTAGGCAC
TGCCGCGCAATCAGACGCGCACCGCTACCGCACCCACCACAACCATAACG
GCAGGCGCCTTTTCCATCCTTCGTTCGAGACGGCGACCGCCGAGGCTTTC
CGGCCGTTCCAGGCGCCTCCGCGAGGGAGCGGTTTGTTCACCTCTGCTGG
ACCTCTGGTGGACGTTTTCCAAGAAGTCATGAGTGACGTGAAGAGAGGTG
AGCCGCTAGAAACTAACTGTTGTGCTGGTTCCGTTTGGATATCTTGTCTG
CCGCCGCGCGTAAATTATTGTCCATTATGTAGACTATAGACTATCTATCT
ACACAGCAAGTAAGACTAGTCTAGTCTTTTACAAAGATGTGTTCCCGATA
TATCTACATCTAGGATGTGTATCTCGATATGTACCGCAGACTGGTGTGTA
GACATGTATCATAGACTGGTGTAGTTTAGACTACGTAGAGAGAATATCTC
TAGATATACTATTGGTAGTAAGATTAGTAGTCTAGATATCTAGAGATTCT
CGAGAACATCGTTGCCCCTCGATCGACCAGTGCTGCTTTATTGCGGGCCA
CTTAGATACATACCTGCTGCCTGGTTACATAGACTGGTTCTCGGCACCGT
AAGCGTGCCAAACAAGCACATGGCGGTGCCCTGACTGCAAATCTCCGCAT
TCAGGTGGTCCCATGACAAGTTTGTGTAATTGTCCTTCGCTCTTACAGAG
TCAGTGGTCAAAATACCCTAGACACGTTAGACTTAAGACTACATGGTCTT
GACGTCTATTTACTACGTGGACCCTTGGTGTCCGGCGTACCGGCCTGCCC
GCTGTTCGCTTGTCCCCGAAATCAGGCACACATGTACGGAGAAACTCAAA
GCCTTCAAACATGCACAATTTAATAAAATGAGCGCCCACCCACGCCCTTA
CCCATCTGGATATCGATCTCTCATGCGTACATATGACCCTCTCGAAGTAT
CAAAGTAAAAGTATTGTATCTGGCGCCTACTACAACTCGAGGCACATCAA
TACTGGCTCTTATCAAACAACAGGGGAAGAGCACCTCGAGACGGGTGGAG
GCTGAAATAAAATCGCGCTTCGTTTCGGTAGGCCATGGTGCATATATGTA
GATCGGGAGTTTCGTTCGATTCTTGATTACTTTCTATCGTCTGCTGCCGC
TACAGCTAGTAGTAGTCCATCTTTTCGAGGGGTATGCTAGTATTTTAATG
TTGGCCGACCTCGCAAAACAATTCTCTGCAGGGGAGATGTTGAATTCTTC
TGATATTTAGGTTGTTTTTTCTGCTCGCTTCGCCAAACATTACGTCTCTG
TATGGAATACCGTTTGAACCCCATATCGAGTCTTTGCTCTAGTATGGGTT
AGGTTCCATCTTTGATTCTTTGTTTTATTTTTAGAAGTATTTTTGCGATT
TTTTCCTTCCTTCCTCCTCACCTGACCGCCCACGTCGCTTCTAGCGTTGT
GTCAGCCACAACAAGTAACCCAACACCCGTCCTCTGTGTCGATACTGCTG
CTTTCCGACTCCCCCCCCTCCAACCCATCATGCAGCTGCCCGCGAGCTTT
CGGAACCTACGCCTGCTGCGGCAGGAACCCCGCCCCATGAAGTTGCGGAA
ACGGAGGACGCCGCCATCCTCACAGCCGACCTCCCGGGCTGCAAGAAGGA
AGACGTCGACGCCCAGATTTCGGAGGACGGGGGCACCAAGACGCTCACCA
TCAGGGCCGTGAGAAAGAAATCGCTCCTGTCGAGGAGCAACCCTCCGGAG
ACCTCGGCGGCAGCCACGGCTGCTGGACCCGCTGAACCCGGGAAAGATAC
CCCCCCGGGTTCGGCCTCGTCTTCCTCCTCTTCTTCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14885:2462..4348+

>mRNA_L-elsbetiae_contig14885.3521.1 ID=mRNA_L-elsbetiae_contig14885.3521.1|Name=mRNA_L-elsbetiae_contig14885.3521.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1098bp|location=Sequence derived from alignment at L-elsbetiae_contig14885:2462..4348+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACTTCAAACACCCACCTCGCAGCGCTGCTGGCCCTTCTTCTAGGCAC
TGCCGCGCAATCAGACGCGCACCGCTACCGCACCCACCACAACCATAACG
GCAGGCGCCTTTTCCATCCTTCGTTCGAGACGGCGACCGCCGAGGCTTTC
CGGCCGTTCCAGGCGCCTCCGCGAGGGAGCGGTTTGTTCACCTCTGCTGG
ACCTCTGGTGGACGTTTTCCAAGAAGTCATGAGTGACGTGAAGAGAGATG
ACTTCAAACACCCACCTCGCAGCGCTGCTGGCCCTTCTTCTAGGCACTGC
CGCGCAATCAGACGCGCACCGCTACCGCACCCACCACAACCATAACGGCA
GGCGCCTTTTCCATCCTTCGTTCGAGACGGCGACCGCCGAGGCTTTCCGG
CCGTTCCAGGCGCCTCCGCGAGGGAGCGGTTTGTTCACCTCTGCTGGACC
TCTGGTGGACGTTTTCCAAGAAGTCATGAGTGACGTGAAGAGAGCTGCCC
GCGAGCTTTCGGAACCTACGCCTGCTGCGGCAGGAACCCCGCCCCATGAA
GTTGCGGAAACGGAGGACGCCGCCATCCTCACAGCCGACCTCCCGGGCTG
CAAGAAGGAAGACGTCGACGCCCAGATTTCGGAGGACGGGGGCACCAAGA
CGCTCACCATCAGGGCCGTGAGAAAGAAATCGCTCCTGTCGAGGAGCAAC
CCTCCGGAGACCTCGGCGGCAGCCACGGCTGCTGGACCCGCTGAACCCGG
GAAAGATACCCCCCCGGGTTCGGCCTCGTCTTCCTCCTCTTCTTCTCTGC
CCGCGAGCTTTCGGAACCTACGCCTGCTGCGGCAGGAACCCCGCCCCATG
AAGTTGCGGAAACGGAGGACGCCGCCATCCTCACAGCCGACCTCCCGGGC
TGCAAGAAGGAAGACGTCGACGCCCAGATTTCGGAGGACGGGGGCACCAA
GACGCTCACCATCAGGGCCGTGAGAAAGAAATCGCTCCTGTCGAGGAGCA
ACCCTCCGGAGACCTCGGCGGCAGCCACGGCTGCTGGACCCGCTGAACCC
GGGAAAGATACCCCCCCGGGTTCGGCCTCGTCTTCCTCCTCTTCTTCT
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