mRNA_L-elsbetiae_contig14875.3517.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14875.3517.1
Unique NamemRNA_L-elsbetiae_contig14875.3517.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: D7FU28_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU28_ECTSI)

HSP 1 Score: 135 bits (340), Expect = 5.360e-34
Identity = 67/121 (55.37%), Postives = 81/121 (66.94%), Query Frame = 1 
Query:    1 SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRLAPAST--CS-TPAEAYEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRP-ISNRQFTPSPIAIVTSTEDTTPPPIA 351
            S D  LDY RHY +   DAVCDM C GD+T+ CGGF+SFDL++L   ST  CS TP EAYEQCGG DWTG TCC +GY C  +   GCY+QCRP ++    TPSP++       TT PP+A
Sbjct:  448 SADELLDYERHYQMNDADAVCDMSCRGDKTQPCGGFNSFDLYKLQTTSTVLCSGTPVEAYEQCGGKDWTGSTCCMDGYDCTQMVEDGCYAQCRPSVTVEPITPSPVS-------TTRPPVA 561
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: D8LMS9_ECTSI (EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LMS9_ECTSI)

HSP 1 Score: 90.5 bits (223), Expect = 2.600e-18
Identity = 49/110 (44.55%), Postives = 59/110 (53.64%), Query Frame = 1 
Query:    1 SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRLAPASTCSTPA-------------------EAYEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRP 273
            S D  LDY RH       A+CD  C GDE ETCGG ++FDL+R+ P+    TPA                   EA+ QCGG +W G TCC EGY+CV  +    YSQCRP
Sbjct:  386 SADEDLDYERHGT-----AMCDKACRGDEGETCGGENAFDLYRIMPSMDLPTPATPFSEPEPEPTTPVSDGCAEAWGQCGGGNWEGSTCCMEGYECV--ANNDWYSQCRP 488
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: A0A6H5KHF5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF5_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.750e-16
Identity = 42/97 (43.30%), Postives = 53/97 (54.64%), Query Frame = 1 
Query:    1 SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRLAPASTCSTPA-------------------EAYEQCGGADWTGPTCCSEGYQCV 234
            S D  LDY RH       A+C+M CLGDE ETCGG ++FDL+++ P+    TPA                   EA+ QC G +W G TCC EGY+CV
Sbjct:   73 SADEDLDYERHGT-----AMCNMGCLGDEGETCGGENAFDLYKIMPSMNSPTPATPFSEPEPEPTTPLSDGCAEAWGQCDGGNWEGSTCCVEGYKCV 164
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: D8LTU8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTU8_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 3.150e-7
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 PDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRLAPASTCS 153
            P+  +DY RH    GE A C+ DC GDE E+CGGFD+FDL+R+  A T S
Sbjct:  189 PEDQVDYARH----GEGAQCNYDCAGDEDESCGGFDAFDLYRIGAAYTTS 234
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: A0A6H5JJ37_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ37_9PHAE)

HSP 1 Score: 58.9 bits (141), Expect = 3.240e-7
Identity = 29/49 (59.18%), Postives = 35/49 (71.43%), Query Frame = 1 
Query:    1 SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRL--APA 141
            S DG LDY+RH    G+  VCD  C+GDE+ETCGG  SF+L+RL  APA
Sbjct:  852 SRDGSLDYDRH----GDTGVCDYPCIGDESETCGGVHSFNLYRLSWAPA 896
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: D7FRE8_ECTSI (EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRE8_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.130e-6
Identity = 29/49 (59.18%), Postives = 34/49 (69.39%), Query Frame = 1 
Query:    1 SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRL--APA 141
            S DG LDY+RH    G+  VCD  C GDE+ETCGG  SF+L+RL  APA
Sbjct: 1198 SRDGSLDYDRH----GDTGVCDYPCRGDESETCGGVHSFNLYRLSWAPA 1242
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: A0A7Y7CA45_9DELT (DNRLRE domain-containing protein n=2 Tax=Myxococcus TaxID=32 RepID=A0A7Y7CA45_9DELT)

HSP 1 Score: 53.9 bits (128), Expect = 1.100e-5
Identity = 26/58 (44.83%), Postives = 31/58 (53.45%), Query Frame = 1 
Query:  109 DSFDLFRLAPASTCSTPAEA---YEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRP 273
            +S D+        C TP E    Y QCGG +WTGPTCC  G+ C  V+    YSQC P
Sbjct:  207 ESTDIANRPGLEVCYTPPECAVTYGQCGGLNWTGPTCCQAGFTCTYVNDS--YSQCNP 262
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: A0A1C7NIP5_9FUNG (Cellulase n=1 Tax=Choanephora cucurbitarum TaxID=101091 RepID=A0A1C7NIP5_9FUNG)

HSP 1 Score: 53.9 bits (128), Expect = 1.330e-5
Identity = 27/53 (50.94%), Postives = 28/53 (52.83%), Query Frame = 1 
Query:  121 LFRLAPASTCSTPAEAYEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRPIS 279
            L     AS CS    AY QCGG +WTGPTCC  G  CV       YSQC P S
Sbjct:   16 LTSSVEASECSA---AYYQCGGKNWTGPTCCEAGSTCVTKDNNEYYSQCLPSS 65
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BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Match: A0A179FKZ4_METCM (Glucanase n=2 Tax=Metacordyceps chlamydosporia TaxID=280754 RepID=A0A179FKZ4_METCM)

HSP 1 Score: 52.0 bits (123), Expect = 7.130e-5
Identity = 25/51 (49.02%), Postives = 29/51 (56.86%), Query Frame = 1 
Query:  121 LFRLAPASTCSTPAEAYEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRP 273
            L   APA T    A  + QCGG DW+GPTCC  G  CV  ++   YSQC P
Sbjct:   15 LVACAPAETRQNCATTWGQCGGQDWSGPTCCPSGSTCVAQNSY--YSQCLP 63
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14875.3517.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FU28_ECTSI5.360e-3455.37EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
D8LMS9_ECTSI2.600e-1844.55EsV-1-166 n=3 Tax=Ectocarpus TaxID=2879 RepID=D8LM... [more]
A0A6H5KHF5_9PHAE1.750e-1643.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LTU8_ECTSI3.150e-754.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JJ37_9PHAE3.240e-759.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FRE8_ECTSI1.130e-659.18EsV-1-166 n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
A0A7Y7CA45_9DELT1.100e-544.83DNRLRE domain-containing protein n=2 Tax=Myxococcu... [more]
A0A1C7NIP5_9FUNG1.330e-550.94Cellulase n=1 Tax=Choanephora cucurbitarum TaxID=1... [more]
A0A179FKZ4_METCM7.130e-549.02Glucanase n=2 Tax=Metacordyceps chlamydosporia Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14875contigL-elsbetiae_contig14875:899..2855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.8
Seed ortholog evalue3.4e-29
Seed eggNOG ortholog2880.D7FU28
KEGG koko:K01315
KEGG Pathwayko04080,ko04610,ko05150,ko05164,map04080,map04610,map05150,map05164
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.4.21.7
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01002,ko04147,ko04516
Exons5
Model size461
Cds size459
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14875.3517.1prot_L-elsbetiae_contig14875.3517.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14875 899..2855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.154294-CDS-L-elsbetiae_contig14875:898..9821622815600.154294-CDS-L-elsbetiae_contig14875:898..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 899..982 -
1691682983.363523-CDS-L-elsbetiae_contig14875:898..9821691682983.363523-CDS-L-elsbetiae_contig14875:898..982Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 899..982 -
1622815600.166712-CDS-L-elsbetiae_contig14875:1503..16141622815600.166712-CDS-L-elsbetiae_contig14875:1503..1614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 1504..1614 -
1691682983.3771126-CDS-L-elsbetiae_contig14875:1503..16141691682983.3771126-CDS-L-elsbetiae_contig14875:1503..1614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 1504..1614 -
1622815600.1831284-CDS-L-elsbetiae_contig14875:2117..22041622815600.1831284-CDS-L-elsbetiae_contig14875:2117..2204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2118..2204 -
1691682983.391014-CDS-L-elsbetiae_contig14875:2117..22041691682983.391014-CDS-L-elsbetiae_contig14875:2117..2204Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2118..2204 -
1622815600.1930602-CDS-L-elsbetiae_contig14875:2385..24751622815600.1930602-CDS-L-elsbetiae_contig14875:2385..2475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2386..2475 -
1691682983.4045453-CDS-L-elsbetiae_contig14875:2385..24751691682983.4045453-CDS-L-elsbetiae_contig14875:2385..2475Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2386..2475 -
1622815600.2057257-CDS-L-elsbetiae_contig14875:2768..28551622815600.2057257-CDS-L-elsbetiae_contig14875:2768..2855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2769..2855 -
1691682983.4126723-CDS-L-elsbetiae_contig14875:2768..28551691682983.4126723-CDS-L-elsbetiae_contig14875:2768..2855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14875 2769..2855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14875.3517.1

>prot_L-elsbetiae_contig14875.3517.1 ID=prot_L-elsbetiae_contig14875.3517.1|Name=mRNA_L-elsbetiae_contig14875.3517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=153bp
SPDGGLDYNRHYDIIGEDAVCDMDCLGDETETCGGFDSFDLFRLAPASTC
STPAEAYEQCGGADWTGPTCCSEGYQCVDVSTRGCYSQCRPISNRQFTPS
PIAIVTSTEDTTPPPIATDRQAEEPVSPTPEPTSPEAPETLAPVPTPATS
TFG
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mRNA from alignment at L-elsbetiae_contig14875:899..2855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14875.3517.1 ID=mRNA_L-elsbetiae_contig14875.3517.1|Name=mRNA_L-elsbetiae_contig14875.3517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1957bp|location=Sequence derived from alignment at L-elsbetiae_contig14875:899..2855- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCCGACGGCGGCCTCGACTACAACCGCCACTACGACATCATCGGCGA
GGACGCCGTGTGCGACATGGACTGCCTGGGAGACGAGGTGCGCATGGTTC
TCTGCTGACAGGGGATAGCGCCGAGGTATTCCTGCTGTATGCAGTGGTCT
TGGTATTGAGAGGGCAGGGCGCAAAGACCCCCTTAAGGGTTTTTGCGGCG
GAACGGCCTTGCCCGACATGCTCAGCTATTGCAGTGTTGCCTCGTGCTAC
GGAGGGACTCTGCCGCCGGTTCTTGAACGAGAATTGCCGGGTACATATTA
ATATGCCATGCGCATGGGTGCCGCATGTAACCCCGACCCTCTTTTTCATC
CTCCCTTCTCACCCTATGAAACTAACTCAGACCGAAACCTGCGGCGGATT
CGACTCCTTCGACCTCTTCAGGCTCGCACCGGCATCGACGTGTTCAACCC
CGGCCGAGGCCTACGAGCAGGTATATGTCCGTCACATTTCGGTTCTTCCT
TATTGAATAGGTTGGGCGATGTCTTCTATACCCCTCCTAGACAAAGGAGG
CTTGCAGAACAAGTATCACTCAACGTCCAGATAAAAACAAATTATTTGTA
TGCACACATGCCACCAACCGATATATGTCGCCTTGTGATCGAAACTATCA
GTGCGGAGGCGCAGACTGGACGGGACCGACGTGCTGCTCTGAGGGATACC
AGTGCGTCGATGTGAGCACTCGAGGCTGCTACTCGCAGGTGAGAGAGAGA
GGACGAGAAAGGATAAGGTCAGCGGGGAGCTTATTTAGGTTTGACAGCGA
CGATTACTCCCCCCACCATGTAATCGATACCAAGGAACTATCTGATTTCG
CACAGGGTCATTTTTTACAATATCTGCGGTGTACTACAGTACGAGCCACT
CGCCGATAGATGAGGAAAGGTGCGGTGGGCCTTAGCGGTATAGGTTTGGC
CTCTACGTGCTTCGGCACAGTGTAGACGGTCTGTTCCTGTTCGTCGTGGC
ATAAAGGTAATACCTCCAATAGCAAAGTACCTCCTCCCTGCCCTCTGAGT
CTTCGCCGTCCCCTTCACCTCGAGATCAACCTGGCCCATTGTTGGCGATA
CGAGAGTATCAGAATATACAGTCTACTGGTGACCATATATTGCATGTGAG
CAACTATCGTTTTCCCTGACCGCGCGCCTCTCTGTCCCATGTGTTCGATT
GTCGTTTTTGCTGCTCTTCCCCCGGCCCACTCAACGCACAGTGCCGCCCC
ATCAGCAACAGGCAATTCACTCCTTCTCCCATCGCCATCGTCACCAGCAC
CGAGGACACCACTCCTCCCCCCATCGCCACTGACCGGCAAGCAGAGGAGC
CGGTAAGTCCATGAAAACCCAACAGGGATATATACAAGGTTTGGCCGCTT
ACGTGGCCCTGCCTTGTTGAAAACGATTCCAAGTCAACGGGGAGGTGCTG
ATGGGGGTTGACATAAAGGGACACGGGGGATGCAGGAGACCGCAGGAGAG
ACAAATCTGGGGGGGGGGTGCGGCCTGTCAGGCGAGACATCTCTGGCTTC
TCAACAATTTGTTAAATCATGACATATGTGTGTATTGACCCTCTTAGATA
TAAACCGTAATATACCGTGATCAACTGGGGCTTTTTTATTGGATCCTGCA
GTGCCGAAAACGCAGCGAAGCTCAAATAACCACAGTTTCGTGTCGATTTC
CCCCTTCGCCGCTGACGGGCTCAAACTGCCGAGGCAGTAGGATAGTCGCA
ACCGCCATGACCAGCAGCGGCTGGCGAACTCAACTCCGCCCATCGGGAGT
GCAACTCCGGCCTTGGTTGGTCAGCTAATTCTCTGTGAAAATGTTATTTC
TCCGGCCTGTTGCTCATAATCAGGTTTCCCCGACACCCGAGCCTACTTCC
CCGGAAGCACCGGAGACGCTGGCCCCCGTACCAACTCCCGCTACGTCTAC
TTTCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14875:899..2855-

>mRNA_L-elsbetiae_contig14875.3517.1 ID=mRNA_L-elsbetiae_contig14875.3517.1|Name=mRNA_L-elsbetiae_contig14875.3517.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=918bp|location=Sequence derived from alignment at L-elsbetiae_contig14875:899..2855- (Laminarionema elsbetiae ELsaHSoW15)
TCTCCCGACGGCGGCCTCGACTACAACCGCCACTACGACATCATCGGCGA
GGACGCCGTGTGCGACATGGACTGCCTGGGAGACGAGTCTCCCGACGGCG
GCCTCGACTACAACCGCCACTACGACATCATCGGCGAGGACGCCGTGTGC
GACATGGACTGCCTGGGAGACGAGACCGAAACCTGCGGCGGATTCGACTC
CTTCGACCTCTTCAGGCTCGCACCGGCATCGACGTGTTCAACCCCGGCCG
AGGCCTACGAGCAGACCGAAACCTGCGGCGGATTCGACTCCTTCGACCTC
TTCAGGCTCGCACCGGCATCGACGTGTTCAACCCCGGCCGAGGCCTACGA
GCAGTGCGGAGGCGCAGACTGGACGGGACCGACGTGCTGCTCTGAGGGAT
ACCAGTGCGTCGATGTGAGCACTCGAGGCTGCTACTCGCAGTGCGGAGGC
GCAGACTGGACGGGACCGACGTGCTGCTCTGAGGGATACCAGTGCGTCGA
TGTGAGCACTCGAGGCTGCTACTCGCAGTGCCGCCCCATCAGCAACAGGC
AATTCACTCCTTCTCCCATCGCCATCGTCACCAGCACCGAGGACACCACT
CCTCCCCCCATCGCCACTGACCGGCAAGCAGAGGAGCCGTGCCGCCCCAT
CAGCAACAGGCAATTCACTCCTTCTCCCATCGCCATCGTCACCAGCACCG
AGGACACCACTCCTCCCCCCATCGCCACTGACCGGCAAGCAGAGGAGCCG
GTTTCCCCGACACCCGAGCCTACTTCCCCGGAAGCACCGGAGACGCTGGC
CCCCGTACCAACTCCCGCTACGTCTACTTTCGGCGTTTCCCCGACACCCG
AGCCTACTTCCCCGGAAGCACCGGAGACGCTGGCCCCCGTACCAACTCCC
GCTACGTCTACTTTCGGC
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