mRNA_L-elsbetiae_contig14874.3516.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14874.3516.1
Unique NamemRNA_L-elsbetiae_contig14874.3516.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14874.3516.1 vs. uniprot
Match: A0A6H5L838_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L838_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 5.730e-9
Identity = 39/91 (42.86%), Postives = 47/91 (51.65%), Query Frame = 1 
Query:   37 PRMRRLLLAPSLRSNGAQEFGPGGAVYCCHLRYPHPRSSSSSPTPQVPFPEINFSAVEEVVSPILANLPLLHIAHPLACPEPEGDDDGDGR 309
            PR+ R+ +   LR         GG       RY   R    S   +VP P+I F    E   P+L +LPLL I+  LACPEPEGDDDGDGR
Sbjct:    8 PRVTRVAMQAGLRCARTGSRRSGG-------RYAK-RGGFLSTAAKVPLPDITFDVESEPALPLLGDLPLLLISQSLACPEPEGDDDGDGR 90
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14874.3516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L838_9PHAE5.730e-942.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14874contigL-elsbetiae_contig14874:1050..2138 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-23_000370.1
Exons2
Model size792
Cds size270
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14874.3516.1prot_L-elsbetiae_contig14874.3516.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14874 1092..1658 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.0783434-UTR-L-elsbetiae_contig14874:1049..10911622815600.0783434-UTR-L-elsbetiae_contig14874:1049..1091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14874 1050..1091 +
1691682983.3190038-UTR-L-elsbetiae_contig14874:1049..10911691682983.3190038-UTR-L-elsbetiae_contig14874:1049..1091Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14874 1050..1091 +
1622815600.1173577-UTR-L-elsbetiae_contig14874:1658..21381622815600.1173577-UTR-L-elsbetiae_contig14874:1658..2138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14874 1659..2138 +
1691682983.3539863-UTR-L-elsbetiae_contig14874:1658..21381691682983.3539863-UTR-L-elsbetiae_contig14874:1658..2138Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14874 1659..2138 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815600.0899446-CDS-L-elsbetiae_contig14874:1091..13171622815600.0899446-CDS-L-elsbetiae_contig14874:1091..1317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14874 1092..1317 +
1691682983.3301806-CDS-L-elsbetiae_contig14874:1091..13171691682983.3301806-CDS-L-elsbetiae_contig14874:1091..1317Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14874 1092..1317 +
1622815600.1018727-CDS-L-elsbetiae_contig14874:1614..16581622815600.1018727-CDS-L-elsbetiae_contig14874:1614..1658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14874 1615..1658 +
1691682983.3427377-CDS-L-elsbetiae_contig14874:1614..16581691682983.3427377-CDS-L-elsbetiae_contig14874:1614..1658Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14874 1615..1658 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14874.3516.1

>prot_L-elsbetiae_contig14874.3516.1 ID=prot_L-elsbetiae_contig14874.3516.1|Name=mRNA_L-elsbetiae_contig14874.3516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=90bp
MRRLLLAPSLRSNGAQEFGPGGAVYCCHLRYPHPRSSSSSPTPQVPFPEI
NFSAVEEVVSPILANLPLLHIAHPLACPEPEGDDDGDGR*
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mRNA from alignment at L-elsbetiae_contig14874:1050..2138+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14874.3516.1 ID=mRNA_L-elsbetiae_contig14874.3516.1|Name=mRNA_L-elsbetiae_contig14874.3516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1089bp|location=Sequence derived from alignment at L-elsbetiae_contig14874:1050..2138+ (Laminarionema elsbetiae ELsaHSoW15)
AAACGGTGGCGTTGGAAATATCTAGTTGATAGCTATCCGAGAATGCGTCG
TTTGTTGCTGGCACCTTCGTTACGGAGTAATGGAGCTCAAGAATTCGGTC
CGGGGGGTGCGGTATATTGTTGTCACTTACGGTACCCCCACCCCCGCTCG
TCCTCGTCATCGCCAACCCCGCAGGTTCCTTTTCCGGAAATCAATTTCAG
TGCCGTAGAGGAGGTGGTATCACCCATCCTGGCGAATCTTCCGCTGTTGC
ACATTGCCCACCCCTTAGGTAGGTGGACAGAGAGAAGCAGCGCCCTCGTT
GGTACACACGTTCTGGCACGAGTTGGGAGAGTGCTCTTGCTCTTGACGTG
TGTTTCTCGCGGCAGAAACCCTCTACGGTTAACCTTACCAGTGTGCTTCC
GAGCGAGGACACGTCGATCGTTTTCGGTCCACCCGAGTGGTACCAGTCCT
CCTATCGCCGTCTTCGCTCTTGGCTGTCACCCGGGCCTATCTCCTTCTTG
ATGCCCCCCTTTTCCCTTTGCCCTCAACTCCTCCGAACCTGCGTGGGTTT
CCCTTTGACATTCAGCGTGTCCAGAGCCAGAGGGAGATGACGACGGTGAC
GGGCGCTGACATCGGCCCGCCCGGTTTCTGTCCGATCGACTTAGACTTTT
TATTTTTTTAAGATCGGGAAACTCGGCGGGAGACACAATTTTGAGGGCAG
ATGGGAGAGCAGCTGAGATAGCGATTGCAGAGATATGGGGGAGGGTGTGA
TGTTCGTGTGCCACGCCACAGGGGCGATCACTGAGGGTGCGTGCTGAACG
AGTGGTAATCACGGCGAATCAAAGCACGAACAACCATGCATTCGTCAATC
ACGCCGCCTTGCTGACAGTAGCCTGCTGGCGGTTGCCGGCTTTGCAGGGA
GACGTGGTGTCTGTGAGTGCTTGCCTGAGCTGAGGCAGGAGAAACGTGCT
CGCTCTGCGCCCACACGTGCGAGGGTTGGTTGCGGTACCAGTAACACGTC
CGAGCTCCTCGGTGCAAATGATGCCTTGTTATCAGCACTTAACATTGCAG
TCGCACACCAGGCTATCCTGCGCAGATGCCTGGTTGCAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14874:1050..2138+

>mRNA_L-elsbetiae_contig14874.3516.1 ID=mRNA_L-elsbetiae_contig14874.3516.1|Name=mRNA_L-elsbetiae_contig14874.3516.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=540bp|location=Sequence derived from alignment at L-elsbetiae_contig14874:1050..2138+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGTCGTTTGTTGCTGGCACCTTCGTTACGGAGTAATGGAGCTCAAGA
ATTCGGTCCGGGGGGTGCGGTATATTGTTGTCACTTACGGTACCCCCACC
CCCGCTCGTCCTCGTCATCGCCAACCCCGCAGGTTCCTTTTCCGGAAATC
AATTTCAGTGCCGTAGAGGAGGTGGTATCACCCATCCTGGCGAATCTTCC
GCTGTTGCACATTGCCCACCCCTTAGATGCGTCGTTTGTTGCTGGCACCT
TCGTTACGGAGTAATGGAGCTCAAGAATTCGGTCCGGGGGGTGCGGTATA
TTGTTGTCACTTACGGTACCCCCACCCCCGCTCGTCCTCGTCATCGCCAA
CCCCGCAGGTTCCTTTTCCGGAAATCAATTTCAGTGCCGTAGAGGAGGTG
GTATCACCCATCCTGGCGAATCTTCCGCTGTTGCACATTGCCCACCCCTT
AGCGTGTCCAGAGCCAGAGGGAGATGACGACGGTGACGGGCGCTGACGTG
TCCAGAGCCAGAGGGAGATGACGACGGTGACGGGCGCTGA
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