mRNA_L-elsbetiae_contig14864.3511.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14864.3511.1
Unique NamemRNA_L-elsbetiae_contig14864.3511.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14864.3511.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14864contigL-elsbetiae_contig14864:375..3043 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size690
Cds size690
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815599.7898927-CDS-L-elsbetiae_contig14864:374..9991622815599.7898927-CDS-L-elsbetiae_contig14864:374..999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14864 375..999 +
1691682983.200255-CDS-L-elsbetiae_contig14864:374..9991691682983.200255-CDS-L-elsbetiae_contig14864:374..999Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14864 375..999 +
1622815599.830908-CDS-L-elsbetiae_contig14864:2978..30431622815599.830908-CDS-L-elsbetiae_contig14864:2978..3043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14864 2979..3043 +
1691682983.213113-CDS-L-elsbetiae_contig14864:2978..30431691682983.213113-CDS-L-elsbetiae_contig14864:2978..3043Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14864 2979..3043 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14864.3511.1prot_L-elsbetiae_contig14864.3511.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14864 375..3043 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14864.3511.1

>prot_L-elsbetiae_contig14864.3511.1 ID=prot_L-elsbetiae_contig14864.3511.1|Name=mRNA_L-elsbetiae_contig14864.3511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=230bp
MVNVKNKRCTFPGCTTQPWYGKAGSKAEYCRDHAKEGMVDLKSKRCTHHG
CTKRPSHGKTGGKAEYCRDHAKDGMVNVANNKCTFPGCTMIASYGEENTG
TRKFCARHVEEGMVCLSGRSRGDSKISGEADDAGARGSGTASGSRQTNKR
ARRSATGGDLHPVRVKRKGADNEVPDHDNLTACLEPGDAGVKTEDMELPC
KMEPWKAAGRTSAARTKRRKAVAGQAGGP*
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mRNA from alignment at L-elsbetiae_contig14864:375..3043+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14864.3511.1 ID=mRNA_L-elsbetiae_contig14864.3511.1|Name=mRNA_L-elsbetiae_contig14864.3511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2669bp|location=Sequence derived from alignment at L-elsbetiae_contig14864:375..3043+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGAAGAACAAGAGGTGTACCTTCCCCGGGTGCACCACGCA
GCCGTGGTACGGCAAGGCTGGTAGCAAGGCGGAGTACTGCCGTGACCATG
CCAAGGAAGGGATGGTGGACTTGAAGAGCAAGAGATGCACCCACCACGGT
TGCACCAAGAGGCCGTCTCATGGCAAGACTGGCGGTAAGGCGGAGTATTG
CCGTGACCATGCCAAAGACGGGATGGTGAATGTCGCCAACAACAAATGCA
CCTTTCCAGGGTGCACCATGATTGCCAGCTACGGCGAGGAGAACACTGGC
ACCCGGAAATTCTGCGCACGGCACGTCGAAGAAGGGATGGTTTGTCTTTC
TGGCCGGTCCAGGGGAGACAGCAAAATAAGTGGTGAAGCTGATGACGCCG
GAGCAAGGGGTAGCGGCACAGCTAGCGGGAGCAGGCAGACCAACAAACGA
GCCCGCCGGAGTGCCACCGGTGGGGACTTGCATCCGGTCCGGGTAAAACG
AAAAGGCGCTGACAACGAAGTGCCCGACCACGATAATTTGACGGCATGTC
TGGAGCCAGGCGACGCGGGGGTCAAGACGGAGGACATGGAATTGCCTTGC
AAGATGGAGCCGTGGAAAGCTGCAGGTACATTCACACAAGTATATAGTTG
ATATCTCGGGGTGCTGTTGTAGTTGCTGGTCGATGTAGAAGAGACTAGAT
ATGGTTTTTGAGGCATATCCAGGTGCAGTCATATGTAGTTGGACGCACAA
CCGAACAGAACTACTGTACAGTGGGCGCAACCGCTGCAGCGCCGAGCGGC
GAACAGGTACAGTAGTAACGGAATTGAGATCAGGTTTGGAATTTCGTTAC
AGTCAATCACACAAGATACCATGTCCCTGGTGGATACATGTGAGCGCCTT
GTTTCATTTTCACCGGGGGTGGTATTTTGTGGGTGGGGTGGTACCTATTC
TGGCACGGGTGGTAAAGTGCATGTGGTGTGGGGGTCGTCAAAGGGGGGTG
ATAACGGCGGGATGTTATCACTGTACGCGAGCTGAATGGCTGCAGTCTGC
AGGAGTTAGCTTGGAACGGAAAAAAATGGGCGTGATAAATATCGAGGGGA
GGTGTCTTAAGCACCGGCAACACAGTCTATGCACACATGAAACTCGCGCA
TGTACATACGTACCGTAAGTTGCTCTGATGTCCCTCCCCCACCTACCTTT
TGGCCTCGAAGCACGACTTCTTGAATTACCTCCCAGAGGGGAAGTGGTTT
TGGAGACAAACATAAAAATCCTCCTGGGGTAGCGGCTTTTTGTGACACCC
CACCCGGGGGGTGGGTGTACTCTCTACTGTTGGTATGAAACAAGGAGAAA
AATTATTTGGAACGGAATACGACGTCCGGTGTTGACTGTTGACACTTACG
ATGTCTTGCGGGGTGTCCACAAGTCGAGCAACTTATAGTATGTTTGAGCG
AGTTTTTCGCCTTCCCCCTCCGGGTAGATTTCCCCCCTCGGTAGTGCTGT
AAAAAAGAAGACCCCCTCCCTGGTTAGCTACCTCGGTACTTTGACTTCCC
CCCAAGGGGTGTGTGTTCGAGAAATAAAAATTGACCCCGGGGGGGACATC
AGGACAACTTTTGGTATATAGACACGCCATCAAACATCAAACCCATGTTG
AAATGACAAGAGTAAAAACAAAATAGCCCATGGAAATATGGGCCATCAAC
ACCTTGTGTGACACGAAATTCCACATCACATGGAGGTTGAAAGCCGTCTG
GGTTCTCCGCTTGCATATCCGGAATAACATAAACATTTCTTACCATGGCA
CGCTTCGAGCGAGTGAAAATATAATGTTAACCATAAAACCGGACCCCATG
AAGACTGCCGTTGTCTACTACGTTGGTACAGTACTCACAAGGAATATCAT
AATAGCATGCCCTGTGGTGGACATGTCAACCGAATACACTAGGACATGAT
TGGTACACACCGCGCGCACTATTGTAAGGCATGAGCAAAAACAAGGAAGG
AAAAAAGAAAAAGCCAGCAGACCCGACCCCAGCTGGACTGGTCTCGCAAC
TACCGATTGTCACGCGGGGTGATAGCAGGGGCTCGTTGGTTTTACGCTTA
ACCTCACGGGGGGGTGTGTTATCTTCAGTGGTCTGGGTGATATTTTGGCC
TCGGCTCTGTGTCTGGAAATATCGTCACCGGCGGGGTGGTTTCTATTGTG
GGGGTGGCATCGTGTGTAGTTTACGGTGGATCGATGCTTGGTGTAGGCGC
TGAAAAGCTACATGCTACAACTATGATGCAACATCGTATAGAGGAAGCCT
GGTGCGCTCATTTCGCGTTTTTTTTTTTCGATGGCGTTACCCCCGTGTGC
AATAAACTGCCCTGGTTTTGAACTGCTCTGCTCTTGTCCGCCGTCGGCGC
AGGCAGGTTTCGCTTTGTCACAATTTTCTGTACTTCACAGAGAGATTTTG
GTGGTGTGCCACTTTGATGGCATCATTATTTCACATGACCAGCATCCGTT
TGCTCTCCGGCGGTGTTTGTTTTACATCTAACCCCGACCTCACCTGTTTG
CTTGTCGTCCGGACGTGGCTCTTGGTCGCTCAACCCGTTCTCCAATCGAT
GCAGGCCGGACAAGCGCAGCGAGGACGAAGCGGAGAAAGGCCGTGGCGGG
GCAAGCGGGAGGTCCCTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14864:375..3043+

>mRNA_L-elsbetiae_contig14864.3511.1 ID=mRNA_L-elsbetiae_contig14864.3511.1|Name=mRNA_L-elsbetiae_contig14864.3511.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1380bp|location=Sequence derived from alignment at L-elsbetiae_contig14864:375..3043+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAACGTGAAGAACAAGAGGTGTACCTTCCCCGGGTGCACCACGCA
GCCGTGGTACGGCAAGGCTGGTAGCAAGGCGGAGTACTGCCGTGACCATG
CCAAGGAAGGGATGGTGGACTTGAAGAGCAAGAGATGCACCCACCACGGT
TGCACCAAGAGGCCGTCTCATGGCAAGACTGGCGGTAAGGCGGAGTATTG
CCGTGACCATGCCAAAGACGGGATGGTGAATGTCGCCAACAACAAATGCA
CCTTTCCAGGGTGCACCATGATTGCCAGCTACGGCGAGGAGAACACTGGC
ACCCGGAAATTCTGCGCACGGCACGTCGAAGAAGGGATGGTTTGTCTTTC
TGGCCGGTCCAGGGGAGACAGCAAAATAAGTGGTGAAGCTGATGACGCCG
GAGCAAGGGGTAGCGGCACAGCTAGCGGGAGCAGGCAGACCAACAAACGA
GCCCGCCGGAGTGCCACCGGTGGGGACTTGCATCCGGTCCGGGTAAAACG
AAAAGGCGCTGACAACGAAGTGCCCGACCACGATAATTTGACGGCATGTC
TGGAGCCAGGCGACGCGGGGGTCAAGACGGAGGACATGGAATTGCCTTGC
AAGATGGAGCCGTGGAAAGCTGCAGATGGTGAACGTGAAGAACAAGAGGT
GTACCTTCCCCGGGTGCACCACGCAGCCGTGGTACGGCAAGGCTGGTAGC
AAGGCGGAGTACTGCCGTGACCATGCCAAGGAAGGGATGGTGGACTTGAA
GAGCAAGAGATGCACCCACCACGGTTGCACCAAGAGGCCGTCTCATGGCA
AGACTGGCGGTAAGGCGGAGTATTGCCGTGACCATGCCAAAGACGGGATG
GTGAATGTCGCCAACAACAAATGCACCTTTCCAGGGTGCACCATGATTGC
CAGCTACGGCGAGGAGAACACTGGCACCCGGAAATTCTGCGCACGGCACG
TCGAAGAAGGGATGGTTTGTCTTTCTGGCCGGTCCAGGGGAGACAGCAAA
ATAAGTGGTGAAGCTGATGACGCCGGAGCAAGGGGTAGCGGCACAGCTAG
CGGGAGCAGGCAGACCAACAAACGAGCCCGCCGGAGTGCCACCGGTGGGG
ACTTGCATCCGGTCCGGGTAAAACGAAAAGGCGCTGACAACGAAGTGCCC
GACCACGATAATTTGACGGCATGTCTGGAGCCAGGCGACGCGGGGGTCAA
GACGGAGGACATGGAATTGCCTTGCAAGATGGAGCCGTGGAAAGCTGCAG
GCCGGACAAGCGCAGCGAGGACGAAGCGGAGAAAGGCCGTGGCGGGGCAA
GCGGGAGGTCCCTAAGCCGGACAAGCGCAGCGAGGACGAAGCGGAGAAAG
GCCGTGGCGGGGCAAGCGGGAGGTCCCTAA
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