mRNA_L-elsbetiae_contig14843.3500.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14843.3500.1
Unique NamemRNA_L-elsbetiae_contig14843.3500.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14843.3500.1 vs. uniprot
Match: A0A6H5L6D7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6D7_9PHAE)

HSP 1 Score: 164 bits (414), Expect = 1.210e-48
Identity = 92/156 (58.97%), Postives = 109/156 (69.87%), Query Frame = 1 
Query:   37 MVRSIV-ATVGFALLLSILTADASKKKRERNDVFTIFQRQSDDGPRHSPLFTLFAGEGE---YPSKALLFNNDLYGSENDLINQDEADVIGYNQGQCVETRISEGFIFIAECSVTYVFDDGLLMAKGPDSYP-----FPTVLAITGGTGEYAATQG 477
            MVR IV A+V FALLL   T +AS+ K E +  FT+F+RQSDDGPRHSPLFTL   E E   YPSK +LFNNDLYGSE+DLI++ +  ++GYNQG CVET  S GFI  AEC  TYVFDDG L A GP ++       P+ LA+TGGTGEY    G
Sbjct:    1 MVRFIVNASVAFALLLGFATVEASRGKHEGSVEFTVFERQSDDGPRHSPLFTLPVPEAEDVEYPSKMVLFNNDLYGSEDDLIDEVQDALLGYNQGHCVETVASGGFI--AECFFTYVFDDGSLTANGPFNFDAEDGVLPSFLAVTGGTGEYDGALG 154
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BLAST of mRNA_L-elsbetiae_contig14843.3500.1 vs. uniprot
Match: D8LRY1_ECTSI (Potential Allene oxide cyclase, partial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRY1_ECTSI)

HSP 1 Score: 102 bits (255), Expect = 2.260e-25
Identity = 53/89 (59.55%), Postives = 64/89 (71.91%), Query Frame = 1 
Query:  226 LLFNNDLYGSENDLINQDEADVIGYNQGQCVETRISEGFIFIAECSVTYVFDDGLLMAKGPDSYP-----FPTVLAITGGTGEYAATQG 477
            +LFNNDLYGSE+ LI++D+ ++IGYNQG CVET  S GFI  AEC  TYVFDDG L A GP ++       P+ LA+TGGTGEY   QG
Sbjct:    2 VLFNNDLYGSEDHLIDEDQEELIGYNQGHCVETVASGGFI--AECFFTYVFDDGSLTANGPFNFDVEDGVLPSFLAVTGGTGEYDGAQG 88
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14843.3500.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L6D7_9PHAE1.210e-4858.97Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LRY1_ECTSI2.260e-2559.55Potential Allene oxide cyclase, partial n=1 Tax=Ec... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14843contigL-elsbetiae_contig14843:950..1771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size482
Cds size444
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14843.3500.1prot_L-elsbetiae_contig14843.3500.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14843 986..1771 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.9041977-UTR-L-elsbetiae_contig14843:949..9851622815598.9041977-UTR-L-elsbetiae_contig14843:949..985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14843 950..985 +
1691682982.8094015-UTR-L-elsbetiae_contig14843:949..9851691682982.8094015-UTR-L-elsbetiae_contig14843:949..985Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig14843 950..985 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.9146128-CDS-L-elsbetiae_contig14843:985..12551622815598.9146128-CDS-L-elsbetiae_contig14843:985..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14843 986..1255 +
1691682982.819002-CDS-L-elsbetiae_contig14843:985..12551691682982.819002-CDS-L-elsbetiae_contig14843:985..1255Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14843 986..1255 +
1622815598.9284167-CDS-L-elsbetiae_contig14843:1597..17711622815598.9284167-CDS-L-elsbetiae_contig14843:1597..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14843 1598..1771 +
1691682982.8293555-CDS-L-elsbetiae_contig14843:1597..17711691682982.8293555-CDS-L-elsbetiae_contig14843:1597..1771Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14843 1598..1771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14843.3500.1

>prot_L-elsbetiae_contig14843.3500.1 ID=prot_L-elsbetiae_contig14843.3500.1|Name=mRNA_L-elsbetiae_contig14843.3500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=148bp
MVRSIVATVGFALLLSILTADASKKKRERNDVFTIFQRQSDDGPRHSPLF
TLFAGEGEYPSKALLFNNDLYGSENDLINQDEADVIGYNQGQCVETRISE
GFIFIAECSVTYVFDDGLLMAKGPDSYPFPTVLAITGGTGEYAATQGE
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mRNA from alignment at L-elsbetiae_contig14843:950..1771+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14843.3500.1 ID=mRNA_L-elsbetiae_contig14843.3500.1|Name=mRNA_L-elsbetiae_contig14843.3500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=822bp|location=Sequence derived from alignment at L-elsbetiae_contig14843:950..1771+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGAATTTCCACTCGTTTGAGTCTCTACACCAAGGATGGTGCGGTCCAT
TGTTGCCACTGTGGGATTCGCACTTCTTCTGAGCATTCTGACGGCGGATG
CCTCCAAGAAAAAACGCGAGAGAAACGACGTCTTCACTATCTTCCAGAGG
CAAAGCGATGACGGCCCCCGTCACAGTCCGCTCTTTACGCTCTTTGCTGG
AGAAGGAGAGTATCCCTCGAAAGCGCTGCTTTTCAACAACGACCTATATG
GTTCTGAAAATGATCTGATCAACCAAGATGAAGCCGATGTCATTGGGTAC
AACCAGGTGCGTCGATAAAATCGAAAGCAAAGCGTTGTGTACAGTCAGTT
GGTCGGCATTTTTCCTAGAGCTTGATGCACGAATATTCCGCAATATATCT
TACGTCATGTTGAACGGTACCAGGTATCATTCATCACGAGGCGTTAAGCC
AGTGCTCGCATGGAAACGCAATTGTTTCGCTACGGAAAATGTACCTCGAA
AGACTTGTGCGTTGCATGTCCTGCTTGTCGGAGATTGAACGGTCAAATAA
AAACGAAAAAGCATGCATGATCATGCAATAAGGGTGGAAGTAAGGTCACC
GCCATTTGCTTGCTTCTATGCTAACGCTGAGGACACGCCATGTCGCAGGG
TCAATGTGTCGAGACGCGGATCTCCGAAGGTTTCATTTTCATTGCCGAAT
GCTCCGTCACGTACGTATTCGACGACGGCTTGCTCATGGCGAAGGGCCCT
GACAGCTACCCTTTCCCCACTGTACTGGCCATCACTGGGGGCACCGGGGA
ATACGCTGCCACCCAGGGAGAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14843:950..1771+

>mRNA_L-elsbetiae_contig14843.3500.1 ID=mRNA_L-elsbetiae_contig14843.3500.1|Name=mRNA_L-elsbetiae_contig14843.3500.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=888bp|location=Sequence derived from alignment at L-elsbetiae_contig14843:950..1771+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCGGTCCATTGTTGCCACTGTGGGATTCGCACTTCTTCTGAGCAT
TCTGACGGCGGATGCCTCCAAGAAAAAACGCGAGAGAAACGACGTCTTCA
CTATCTTCCAGAGGCAAAGCGATGACGGCCCCCGTCACAGTCCGCTCTTT
ACGCTCTTTGCTGGAGAAGGAGAGTATCCCTCGAAAGCGCTGCTTTTCAA
CAACGACCTATATGGTTCTGAAAATGATCTGATCAACCAAGATGAAGCCG
ATGTCATTGGGTACAACCAGATGGTGCGGTCCATTGTTGCCACTGTGGGA
TTCGCACTTCTTCTGAGCATTCTGACGGCGGATGCCTCCAAGAAAAAACG
CGAGAGAAACGACGTCTTCACTATCTTCCAGAGGCAAAGCGATGACGGCC
CCCGTCACAGTCCGCTCTTTACGCTCTTTGCTGGAGAAGGAGAGTATCCC
TCGAAAGCGCTGCTTTTCAACAACGACCTATATGGTTCTGAAAATGATCT
GATCAACCAAGATGAAGCCGATGTCATTGGGTACAACCAGGGTCAATGTG
TCGAGACGCGGATCTCCGAAGGTTTCATTTTCATTGCCGAATGCTCCGTC
ACGTACGTATTCGACGACGGCTTGCTCATGGCGAAGGGCCCTGACAGCTA
CCCTTTCCCCACTGTACTGGCCATCACTGGGGGCACCGGGGAATACGCTG
CCACCCAGGGAGAAGGTCAATGTGTCGAGACGCGGATCTCCGAAGGTTTC
ATTTTCATTGCCGAATGCTCCGTCACGTACGTATTCGACGACGGCTTGCT
CATGGCGAAGGGCCCTGACAGCTACCCTTTCCCCACTGTACTGGCCATCA
CTGGGGGCACCGGGGAATACGCTGCCACCCAGGGAGAA
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