mRNA_L-elsbetiae_contig14839.3497.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14839.3497.1
Unique NamemRNA_L-elsbetiae_contig14839.3497.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig14839.3497.1 vs. uniprot
Match: D7FHY3_ECTSI (EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHY3_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 4.250e-8
Identity = 28/46 (60.87%), Postives = 32/46 (69.57%), Query Frame = -1 
Query:  250 GRNTTGYKTAEFCSEHKKDGMVDVVEERCSHHGCPKQPSYGADGTK 387
            GRN    K AEFCS+H K GM++VV +RC H GC KQPSYG  G K
Sbjct:   46 GRN----KKAEFCSKHSKPGMINVVNKRCGHPGCMKQPSYGNHGMK 87
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14839.3497.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FHY3_ECTSI4.250e-860.87EsV-1-7 n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14839contigL-elsbetiae_contig14839:1092..1511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size420
Cds size420
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.7632096-CDS-L-elsbetiae_contig14839:1091..15111622815598.7632096-CDS-L-elsbetiae_contig14839:1091..1511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14839 1092..1511 +
1691682982.7380285-CDS-L-elsbetiae_contig14839:1091..15111691682982.7380285-CDS-L-elsbetiae_contig14839:1091..1511Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14839 1092..1511 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14839.3497.1prot_L-elsbetiae_contig14839.3497.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14839 1092..1511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14839.3497.1

>prot_L-elsbetiae_contig14839.3497.1 ID=prot_L-elsbetiae_contig14839.3497.1|Name=mRNA_L-elsbetiae_contig14839.3497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=140bp
SRTSCVERRTPHSCYPQHHSYRGHISSSRHVSSRPSSYVHRRTASFCRRL
HLDGDLVQPRRWVHLLYLHPPFVLLVSRAGLRRLGTVSTIARLLWATVVA
ASLLDDIHHPVLLVFRAELRRLIARSVAASLTTRLGHIV*
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mRNA from alignment at L-elsbetiae_contig14839:1092..1511+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14839.3497.1 ID=mRNA_L-elsbetiae_contig14839.3497.1|Name=mRNA_L-elsbetiae_contig14839.3497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=420bp|location=Sequence derived from alignment at L-elsbetiae_contig14839:1092..1511+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCGTACTTCTTGTGTTGAGAGAAGAACTCCGCATTCTTGCTACCCGCA
GCACCATAGTTACCGTGGCCACATCTCTTCTTCACGGCATGTATCATCCC
GTCCTTCTTCTTATGTTCACCGCAGAACTGCGTCTTTTTGCCGCCGGCTA
CACCTTGACGGCGACTTGGTGCAACCACGGCGGTGGGTGCACCTATTGTA
TCTCCATCCACCATTTGTTTTGCTTGTGTCCAGAGCAGGACTTCGACGTC
TTGGTACCGTCAGCACCATAGCTCGGTTGCTTTGGGCAACCGTGGTGGCT
GCATCTCTCCTCGACGACATCCACCATCCCGTCCTTCTTGTGTTCCGAGC
AGAACTCCGCCGTCTTATAGCCCGTAGTGTTGCGGCCAGCTTGACGACAC
GTTTGGGACATATAGTCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14839:1092..1511+

>mRNA_L-elsbetiae_contig14839.3497.1 ID=mRNA_L-elsbetiae_contig14839.3497.1|Name=mRNA_L-elsbetiae_contig14839.3497.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig14839:1092..1511+ (Laminarionema elsbetiae ELsaHSoW15)
TCCCGTACTTCTTGTGTTGAGAGAAGAACTCCGCATTCTTGCTACCCGCA
GCACCATAGTTACCGTGGCCACATCTCTTCTTCACGGCATGTATCATCCC
GTCCTTCTTCTTATGTTCACCGCAGAACTGCGTCTTTTTGCCGCCGGCTA
CACCTTGACGGCGACTTGGTGCAACCACGGCGGTGGGTGCACCTATTGTA
TCTCCATCCACCATTTGTTTTGCTTGTGTCCAGAGCAGGACTTCGACGTC
TTGGTACCGTCAGCACCATAGCTCGGTTGCTTTGGGCAACCGTGGTGGCT
GCATCTCTCCTCGACGACATCCACCATCCCGTCCTTCTTGTGTTCCGAGC
AGAACTCCGCCGTCTTATAGCCCGTAGTGTTGCGGCCAGCTTGACGACAC
GTTTGGGACATATAGTCTAGTCCCGTACTTCTTGTGTTGAGAGAAGAACT
CCGCATTCTTGCTACCCGCAGCACCATAGTTACCGTGGCCACATCTCTTC
TTCACGGCATGTATCATCCCGTCCTTCTTCTTATGTTCACCGCAGAACTG
CGTCTTTTTGCCGCCGGCTACACCTTGACGGCGACTTGGTGCAACCACGG
CGGTGGGTGCACCTATTGTATCTCCATCCACCATTTGTTTTGCTTGTGTC
CAGAGCAGGACTTCGACGTCTTGGTACCGTCAGCACCATAGCTCGGTTGC
TTTGGGCAACCGTGGTGGCTGCATCTCTCCTCGACGACATCCACCATCCC
GTCCTTCTTGTGTTCCGAGCAGAACTCCGCCGTCTTATAGCCCGTAGTGT
TGCGGCCAGCTTGACGACACGTTTGGGACATATAGTCTAG
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