mRNA_L-elsbetiae_contig1482.3488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1482.3488.1
Unique NamemRNA_L-elsbetiae_contig1482.3488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: D7FN81_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FN81_ECTSI)

HSP 1 Score: 172 bits (437), Expect = 1.680e-46
Identity = 97/121 (80.17%), Postives = 102/121 (84.30%), Query Frame = 2 
Query:    2 ELVQGGDCEADVRVSVAAMAGQ---QGGRXXXXXXXX----GLWSPRFPRAKDVGWWIVLGTEQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTV 343
            EL QGGDCEADVRVSVA   G+   QG R XXXXXXX     LWSPRFPRAK+VGWWIVLGTE GELLALKRVGTLGPRGY TTLRFPSPE+A+G VPLVLHVVADGVMGMDRQ R+T TV
Sbjct: 2219 ELWQGGDCEADVRVSVAVTGGRGQHQGSRRXXXXXXXXXXGSLWSPRFPRAKEVGWWIVLGTEDGELLALKRVGTLGPRGYSTTLRFPSPEDATGTVPLVLHVVADGVMGMDRQARATATV 2339
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A7S2BB24_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BB24_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 1.770e-15
Identity = 48/109 (44.04%), Postives = 62/109 (56.88%), Query Frame = 2 
Query:   20 DCEADVRVSVAAMAGQQGGRXXXXXXXXGLWSPRFPRAKDVGWWIVLGTEQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVV 346
            D +  +RVS+       GGR         L++P F + KD+GWW+ LG E GELLALKR+GTL    Y TTL F +P E  G   L L +VAD V G+D++    V VV
Sbjct:  392 DEDYTLRVSIRRTNAAHGGRSAK------LYTPHFHKPKDLGWWLALGAEDGELLALKRIGTLQNNSYSTTLTFAAPLE-HGATKLALWLVADAVRGLDKRQDIPVLVV 493
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: UPI000A2A9723 (activating signal cointegrator 1 complex subunit 3 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A9723)

HSP 1 Score: 70.1 bits (170), Expect = 1.040e-10
Identity = 38/81 (46.91%), Postives = 58/81 (71.60%), Query Frame = 2 
Query:  113 SPRFPRAKDVGWWIVLG-TEQGELLALKRVGTLGPRGY-RTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVVD 349
            +PRFP++K  GWW+VLG T+ GEL+ALKR+GT+  RG  +TTL F +PE+  GR    L++++D  +G+D+Q    + VV+
Sbjct: 2095 APRFPKSKTEGWWLVLGDTDTGELIALKRLGTI--RGATKTTLSFYTPEDL-GRKIYTLYLISDSYLGLDQQYDIYLEVVE 2172
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: UPI00106A662D (activating signal cointegrator 1 complex subunit 3-like n=1 Tax=Dendronephthya gigantea TaxID=151771 RepID=UPI00106A662D)

HSP 1 Score: 68.9 bits (167), Expect = 2.610e-10
Identity = 34/83 (40.96%), Postives = 56/83 (67.47%), Query Frame = 2 
Query:  110 WSPRFPRAKDVGWWIVLGT-EQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVVDDS 355
            ++PRFP+AKD GWW++LG  + GELLALKR+G +  R    +L F +PEE   ++   L++++D  +G+D+Q    + V++ S
Sbjct: 2117 YAPRFPKAKDAGWWLMLGVIDDGELLALKRIGPIRSRST-VSLAFYTPEETGHKI-YTLYLMSDSYIGLDQQFDICLDVIEAS 2197
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A7D9I4B2_PARCT (Activating signal cointegrator 1 complex subunit 3 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9I4B2_PARCT)

HSP 1 Score: 68.2 bits (165), Expect = 4.790e-10
Identity = 34/83 (40.96%), Postives = 54/83 (65.06%), Query Frame = 2 
Query:  110 WSPRFPRAKDVGWWIVLGT-EQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVVDDS 355
            ++PRFP+ KD GWW+VLG  + GELLALKR+G +  R    +L F +PEE   ++   L+ ++D  +G+D+Q    + V++ S
Sbjct: 2033 YAPRFPKTKDAGWWLVLGVVDDGELLALKRIGAIKSRST-VSLAFYTPEEVGHKI-YTLYFMSDSYIGLDQQFDICLDVIEAS 2113
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A6P4YRM3_BRABE (Activating signal cointegrator 1 complex subunit 3 n=4 Tax=Branchiostoma TaxID=7737 RepID=A0A6P4YRM3_BRABE)

HSP 1 Score: 65.1 bits (157), Expect = 5.530e-9
Identity = 36/79 (45.57%), Postives = 54/79 (68.35%), Query Frame = 2 
Query:  113 SPRFPRAKDVGWWIVLGT-EQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVV 346
            +PRFP+AKD GWW+VLG  ++ ELLA+KR+G +  R  R  L F +PE A GR   VL++++D  +G+D+Q    + V+
Sbjct: 2020 APRFPKAKDEGWWLVLGDMDKRELLAMKRLGPV--RQQRVPLAFYTPE-AVGRYLYVLYLMSDCYVGLDQQYDLALEVI 2095
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A2K3M9D7_TRIPR (U5 small nuclear ribonucleoprotein 200 kDa helicase-like protein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3M9D7_TRIPR)

HSP 1 Score: 60.8 bits (146), Expect = 9.530e-9
Identity = 32/78 (41.03%), Postives = 50/78 (64.10%), Query Frame = 2 
Query:  113 SPRFPRAKDVGWWIVLG-TEQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTV 343
            +PR+P+AK+ GWW+V+G T+   LLA+KRV     R  +T L FP+P +A G+   VL+ + D  +G D++   T+ V
Sbjct:   43 APRYPKAKEEGWWLVVGDTKTNMLLAIKRVSL--QRKLKTKLEFPAPSDA-GKKSYVLYFMCDSYIGCDQEYGFTLDV 117
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BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A1R3JXW0_COCAP (Uncharacterized protein n=3 Tax=Corchorus TaxID=93758 RepID=A0A1R3JXW0_COCAP)

HSP 1 Score: 62.4 bits (150), Expect = 4.690e-8
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = 2 
Query:  113 SPRFPRAKDVGWWIVLG-TEQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVVD 349
            +PRFP+AK+ GWW+V+G TE  +LLA+KRV  +  R  + +L F +P E +GR    L+ + D  +G D++    V V++
Sbjct: 2089 APRFPKAKEEGWWLVVGDTETNQLLAIKRVSLV--RKSKVSLAFSAPSE-TGRKTCTLYFMCDSYLGCDQEYNFNVNVME 2165
[Close]
BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A2Z5TZE8_9NEOP (Putative activating signal cointegrator 1 complex subunit 3 B n=1 Tax=Reticulitermes speratus TaxID=60591 RepID=A0A2Z5TZE8_9NEOP)

HSP 1 Score: 62.4 bits (150), Expect = 4.690e-8
Identity = 33/73 (45.21%), Postives = 50/73 (68.49%), Query Frame = 2 
Query:  107 LWSPRFPRAKDVGWWIVLGT-EQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQ 322
            ++SPRFPR KD GW + LG+ E GEL+ALKRV  +  R     L F +P+  +GR+ L L++++D  +G+D+Q
Sbjct: 2074 VYSPRFPRRKDEGWLLALGSVETGELMALKRVSAVRSRKNFQQLTFFTPK-MTGRLILTLYILSDCYLGLDQQ 2145
[Close]
BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Match: A0A6L2PX95_COPFO (Uncharacterized protein n=1 Tax=Coptotermes formosanus TaxID=36987 RepID=A0A6L2PX95_COPFO)

HSP 1 Score: 62.0 bits (149), Expect = 6.150e-8
Identity = 33/82 (40.24%), Postives = 53/82 (64.63%), Query Frame = 2 
Query:  113 SPRFPRAKDVGWWIVLGT-EQGELLALKRVGTLGPRGYRTTLRFPSPEEASGRVPLVLHVVADGVMGMDRQVRSTVTVVDDS 355
            SP+FPR KD GW++ LG+ E GEL+ALKRV  +  R     L F +P + +GR+ L L++++D  +G+D+Q    + ++  S
Sbjct: 1241 SPQFPRGKDEGWFLTLGSVETGELMALKRVSAVRSRKNFQQLTFFTPRK-TGRLILTLYILSDCYLGLDQQYDLHLDIIPPS 1321
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1482.3488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN81_ECTSI1.680e-4680.17Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BB24_9STRA1.770e-1544.04Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
UPI000A2A97231.040e-1046.91activating signal cointegrator 1 complex subunit 3... [more]
UPI00106A662D2.610e-1040.96activating signal cointegrator 1 complex subunit 3... [more]
A0A7D9I4B2_PARCT4.790e-1040.96Activating signal cointegrator 1 complex subunit 3... [more]
A0A6P4YRM3_BRABE5.530e-945.57Activating signal cointegrator 1 complex subunit 3... [more]
A0A2K3M9D7_TRIPR9.530e-941.03U5 small nuclear ribonucleoprotein 200 kDa helicas... [more]
A0A1R3JXW0_COCAP4.690e-840.00Uncharacterized protein n=3 Tax=Corchorus TaxID=93... [more]
A0A2Z5TZE8_9NEOP4.690e-845.21Putative activating signal cointegrator 1 complex ... [more]
A0A6L2PX95_COPFO6.150e-840.24Uncharacterized protein n=1 Tax=Coptotermes formos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1482contigL-elsbetiae_contig1482:20887..22178 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size549
Cds size387
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1482.3488.1prot_L-elsbetiae_contig1482.3488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1482 20887..22016 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.9666896-CDS-L-elsbetiae_contig1482:20886..210151622815597.9666896-CDS-L-elsbetiae_contig1482:20886..21015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1482 20887..21015 +
1691682982.2208989-CDS-L-elsbetiae_contig1482:20886..210151691682982.2208989-CDS-L-elsbetiae_contig1482:20886..21015Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1482 20887..21015 +
1622815597.9835835-CDS-L-elsbetiae_contig1482:21758..220161622815597.9835835-CDS-L-elsbetiae_contig1482:21758..22016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1482 21759..22016 +
1691682982.2304537-CDS-L-elsbetiae_contig1482:21758..220161691682982.2304537-CDS-L-elsbetiae_contig1482:21758..22016Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1482 21759..22016 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.00494-UTR-L-elsbetiae_contig1482:22016..221781622815598.00494-UTR-L-elsbetiae_contig1482:22016..22178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1482 22017..22178 +
1691682982.2404633-UTR-L-elsbetiae_contig1482:22016..221781691682982.2404633-UTR-L-elsbetiae_contig1482:22016..22178Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1482 22017..22178 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1482.3488.1

>prot_L-elsbetiae_contig1482.3488.1 ID=prot_L-elsbetiae_contig1482.3488.1|Name=mRNA_L-elsbetiae_contig1482.3488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=129bp
GAGTRRRLRGGRPRVRCRDGRPAGGSGPGRRRRRRPVVAAIPQGQGRGVV
DRARHGAGGAAGAEARRDAGPTGVQDHPALPQPRGGLGEGAAGAARGGGR
GDGDGSAGPVDRDGCRRLVIAARVEIFM*
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mRNA from alignment at L-elsbetiae_contig1482:20887..22178+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1482.3488.1 ID=mRNA_L-elsbetiae_contig1482.3488.1|Name=mRNA_L-elsbetiae_contig1482.3488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1292bp|location=Sequence derived from alignment at L-elsbetiae_contig1482:20887..22178+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCTGGTACAAGGAGGCGACTGCGAGGCGGACGTCCGCGTGTCCGTTG
CCGCGATGGCCGGCCAGCAGGGGGGTCGGGGCCGGGGCGGCGGCGGCGGC
GGCGGCCTGTGGTCGCCGCGATTCCCCAGGTAACACTACATCTTGGATGG
GGAAACAGGGGGTTAGTATGCCTACAACAGTCCCTCTGGAACGACTTCTT
CGCAGACTGGAGGTAGACTGCTGACAGTTAGTTGTATACATTTAAGTAAA
AAAAAGAACATTCAAAAGTCGCAACGCCGGGAGGGAAAGTCAATTTATTT
TCTTCTTTTCGTGACAAAACGGCGCGCTCGGAAAACACGCGTCTGTGAGA
GGTTGAATTGTTTGTGCGCATGTATGTATGTATGTATGTATGTATGTATA
TCTCTACGTTTTTCAAAACCCCCGTGTGTACCGGAGGTCATCGAGGCGGG
GAGCGGCTTGTTTTATGCAAGCAGAGCAGAGTGGTATTAGGTAATATGGC
AAATAATTGGCACGGCAGGGGGGGTACAGTACATACGTGCACGGTTTTAT
GCACACACATGGGTGTTATCTTTCTCCACTCCTCGAATTATGACCGCTCT
TCTAGAAAATACAGACAGGTTCTGTCTGTTGATCCCATTTTCCGCATACA
TAATAGAACCTCGTTTTATCGGTGCTCTTTTCCCTGAAGAGCCAGGGGCG
CGGGTTACGTTTTCCTTAACCCCGTCCGTACGTTTCTACATACTCGGTTC
TCCTATTTTCCCTGTGTTTAACGGCGGTGGATTCCTAAACCCCGTTCGTT
CGTTTCCGAAGCCCCGTTCGTTCGTTTGTACATACTCGGTGCTCCTCTTT
TCCCCTGCTTTTTACATTGCAGGGCCAAGGACGTGGGGTGGTGGATCGTG
CTCGGCACGGAGCAGGGGGAGCTGCTGGCGCTGAAGCGCGTCGGGACGCT
GGGCCCACGGGGGTACAGGACCACCCTGCGCTTCCCCAGCCCAGAGGAGG
CCTCGGGGAGGGTGCCGCTGGTGCTGCACGTGGTGGCGGACGGGGTGATG
GGGATGGATCGGCAGGTCCGGTCGACCGTGACGGTTGTCGACGACTCGTG
ATCGCCGCGAGAGTCGAGATATTTATGTAGACAAAATAACCCCCGGGTAA
ATAAATATACAGGCGTATTTGATATTTGCCTGCTTATGGAAATCGGCCGC
ACAATAATAATGCTGGTTGATTCTGGCGGAGCTGAGCGGAGCTGAGCGGA
GCTGCTGCAAAGGGGAGTTTTTGAACTCTTTTATTAAAAAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1482:20887..22178+

>mRNA_L-elsbetiae_contig1482.3488.1 ID=mRNA_L-elsbetiae_contig1482.3488.1|Name=mRNA_L-elsbetiae_contig1482.3488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=774bp|location=Sequence derived from alignment at L-elsbetiae_contig1482:20887..22178+ (Laminarionema elsbetiae ELsaHSoW15)
GGAGCTGGTACAAGGAGGCGACTGCGAGGCGGACGTCCGCGTGTCCGTTG
CCGCGATGGCCGGCCAGCAGGGGGGTCGGGGCCGGGGCGGCGGCGGCGGC
GGCGGCCTGTGGTCGCCGCGATTCCCCAGGGAGCTGGTACAAGGAGGCGA
CTGCGAGGCGGACGTCCGCGTGTCCGTTGCCGCGATGGCCGGCCAGCAGG
GGGGTCGGGGCCGGGGCGGCGGCGGCGGCGGCGGCCTGTGGTCGCCGCGA
TTCCCCAGGGCCAAGGACGTGGGGTGGTGGATCGTGCTCGGCACGGAGCA
GGGGGAGCTGCTGGCGCTGAAGCGCGTCGGGACGCTGGGCCCACGGGGGT
ACAGGACCACCCTGCGCTTCCCCAGCCCAGAGGAGGCCTCGGGGAGGGTG
CCGCTGGTGCTGCACGTGGTGGCGGACGGGGTGATGGGGATGGATCGGCA
GGTCCGGTCGACCGTGACGGTTGTCGACGACTCGTGATCGCCGCGAGAGT
CGAGATATTTATGTAGGGCCAAGGACGTGGGGTGGTGGATCGTGCTCGGC
ACGGAGCAGGGGGAGCTGCTGGCGCTGAAGCGCGTCGGGACGCTGGGCCC
ACGGGGGTACAGGACCACCCTGCGCTTCCCCAGCCCAGAGGAGGCCTCGG
GGAGGGTGCCGCTGGTGCTGCACGTGGTGGCGGACGGGGTGATGGGGATG
GATCGGCAGGTCCGGTCGACCGTGACGGTTGTCGACGACTCGTGATCGCC
GCGAGAGTCGAGATATTTATGTAG
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