mRNA_L-elsbetiae_contig14806.3483.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14806.3483.1
Unique NamemRNA_L-elsbetiae_contig14806.3483.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: C9K4U6_SACJA (Unconventional myosin n=1 Tax=Saccharina japonica TaxID=88149 RepID=C9K4U6_SACJA)

HSP 1 Score: 135 bits (339), Expect = 2.390e-35
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC 196
            AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC
Sbjct: 1256 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC 1320          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A6H5LE99_9PHAE (Myosin motor domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LE99_9PHAE)

HSP 1 Score: 133 bits (335), Expect = 8.290e-35
Identity = 64/65 (98.46%), Postives = 64/65 (98.46%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC 196
            AFVLNFHGRVTQASVKNFQLVVQGD TEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC
Sbjct: 1276 AFVLNFHGRVTQASVKNFQLVVQGDVTEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFDC 1340          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A835YUJ6_9STRA (Tub domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YUJ6_9STRA)

HSP 1 Score: 95.1 bits (235), Expect = 2.860e-22
Identity = 47/64 (73.44%), Postives = 53/64 (82.81%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            A+VLNF+GRVTQASVKNFQLV   D  E+I LQFGRT  + FTMDF +PLSPLQA AITLTSF+
Sbjct:  210 AYVLNFNGRVTQASVKNFQLVESDDTAEKIRLQFGRTSKDSFTMDFTYPLSPLQAFAITLTSFE 273          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: UPI000661F613 (tubby-related protein 2 n=1 Tax=Cavia porcellus TaxID=10141 RepID=UPI000661F613)

HSP 1 Score: 87.0 bits (214), Expect = 3.740e-19
Identity = 43/64 (67.19%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            AFVLNFHGRVTQASVKNFQ++   +  +++ LQFGR   + FTMDFC PLSPLQA AI L+SFD
Sbjct:  212 AFVLNFHGRVTQASVKNFQIIYP-NKPDKVVLQFGRMGPDTFTMDFCFPLSPLQAFAICLSSFD 274          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A7S1BGR2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BGR2_9STRA)

HSP 1 Score: 84.7 bits (208), Expect = 5.300e-19
Identity = 45/64 (70.31%), Postives = 52/64 (81.25%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            A+VLNF+GRVT ASVKNFQLV + + T++I LQFGR   +EFTMDF  PLSPLQA A TLTSFD
Sbjct:  122 AYVLNFNGRVTMASVKNFQLVDE-ENTDKIILQFGRVAKDEFTMDFQWPLSPLQAFATTLTSFD 184          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A6J1XN18_ACIJB (Tubby-like protein n=7 Tax=Felidae TaxID=9681 RepID=A0A6J1XN18_ACIJB)

HSP 1 Score: 86.3 bits (212), Expect = 2.880e-18
Identity = 43/64 (67.19%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            A+VLNFHGRVT+ASVKNFQ +V  D T+ + LQFGR   + FTMDFC PL PLQA AI L+SFD
Sbjct:  379 AYVLNFHGRVTRASVKNFQ-IVHPDDTDALVLQFGRVAPDTFTMDFCFPLCPLQAFAICLSSFD 441          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A482R6S1_9EURY (Tub domain-containing protein n=1 Tax=Methanosarcinales archaeon TaxID=2250255 RepID=A0A482R6S1_9EURY)

HSP 1 Score: 79.3 bits (194), Expect = 3.400e-18
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 2
Query:    8 VLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            +LNF+GRVT ASVKNFQ+V   DA + + LQFGR  T+EFTMDF  PLSPLQA  I L+SFD
Sbjct:    1 MLNFNGRVTMASVKNFQMV-SPDAQDSVLLQFGRVSTDEFTMDFQWPLSPLQAFQICLSSFD 61          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A6P6DR40_OCTDE (tubby-related protein 2 n=1 Tax=Octodon degus TaxID=10160 RepID=A0A6P6DR40_OCTDE)

HSP 1 Score: 85.9 bits (211), Expect = 4.030e-18
Identity = 42/64 (65.62%), Postives = 50/64 (78.12%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            AFVLNFHGRVT+ASVKNFQ++   +  +++ LQFGR   N FTMDFC PL PLQA AI L+SFD
Sbjct:  385 AFVLNFHGRVTRASVKNFQIIYP-NKPDKVVLQFGRVAPNTFTMDFCFPLCPLQAFAICLSSFD 447          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A822I2W1_9NEOB ((mimic poison frog) hypothetical protein n=1 Tax=Ranitomeya imitator TaxID=111125 RepID=A0A822I2W1_9NEOB)

HSP 1 Score: 80.5 bits (197), Expect = 5.080e-18
Identity = 40/64 (62.50%), Postives = 48/64 (75.00%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            ++VLNFHGRVTQASVKNFQ ++  D  E I +QFGR   + FTMDF HPL  LQA +I L+SFD
Sbjct:   54 SYVLNFHGRVTQASVKNFQ-IISTDDPEHIVMQFGRVAEDVFTMDFSHPLCALQAFSICLSSFD 116          
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Match: A0A7S3Y0Z9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y0Z9_HETAK)

HSP 1 Score: 83.6 bits (205), Expect = 5.420e-18
Identity = 42/64 (65.62%), Postives = 51/64 (79.69%), Query Frame = 2
Query:    2 AFVLNFHGRVTQASVKNFQLVVQGDATEQITLQFGRTHTNEFTMDFCHPLSPLQALAITLTSFD 193
            A+VLNF+GRVT ASVKNFQL+ +G+  E + LQFGR   ++FTMDF  PLSP QA AITL+SFD
Sbjct:  188 AYVLNFNGRVTMASVKNFQLI-EGERPEDVLLQFGRVAKDKFTMDFQWPLSPFQAFAITLSSFD 250          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14806.3483.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
C9K4U6_SACJA2.390e-35100.00Unconventional myosin n=1 Tax=Saccharina japonica ... [more]
A0A6H5LE99_9PHAE8.290e-3598.46Myosin motor domain-containing protein n=2 Tax=Ect... [more]
A0A835YUJ6_9STRA2.860e-2273.44Tub domain-containing protein (Fragment) n=1 Tax=T... [more]
UPI000661F6133.740e-1967.19tubby-related protein 2 n=1 Tax=Cavia porcellus Ta... [more]
A0A7S1BGR2_9STRA5.300e-1970.31Hypothetical protein (Fragment) n=1 Tax=Corethron ... [more]
A0A6J1XN18_ACIJB2.880e-1867.19Tubby-like protein n=7 Tax=Felidae TaxID=9681 RepI... [more]
A0A482R6S1_9EURY3.400e-1866.13Tub domain-containing protein n=1 Tax=Methanosarci... [more]
A0A6P6DR40_OCTDE4.030e-1865.63tubby-related protein 2 n=1 Tax=Octodon degus TaxI... [more]
A0A822I2W1_9NEOB5.080e-1862.50(mimic poison frog) hypothetical protein n=1 Tax=R... [more]
A0A7S3Y0Z9_HETAK5.420e-1865.63Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14806contigL-elsbetiae_contig14806:3638..4230 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size198
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.6292706-CDS-L-elsbetiae_contig14806:3637..38001622815597.6292706-CDS-L-elsbetiae_contig14806:3637..3800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14806 3638..3800 +
1691682982.0145028-CDS-L-elsbetiae_contig14806:3637..38001691682982.0145028-CDS-L-elsbetiae_contig14806:3637..3800Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14806 3638..3800 +
1622815597.6420887-CDS-L-elsbetiae_contig14806:4194..42291622815597.6420887-CDS-L-elsbetiae_contig14806:4194..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14806 4195..4229 +
1691682982.0251434-CDS-L-elsbetiae_contig14806:4194..42291691682982.0251434-CDS-L-elsbetiae_contig14806:4194..4229Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14806 4195..4229 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14806.3483.1prot_L-elsbetiae_contig14806.3483.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14806 3638..4229 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14806.3483.1

>prot_L-elsbetiae_contig14806.3483.1 ID=prot_L-elsbetiae_contig14806.3483.1|Name=mRNA_L-elsbetiae_contig14806.3483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=66bp
GVRAEFPREGDPGLGEELPAGGAGRRHGADHAAVREDAHQRVHHGLLPSP
VPAAGVGHHAHQLRLQ
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mRNA from alignment at L-elsbetiae_contig14806:3638..4230+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14806.3483.1 ID=mRNA_L-elsbetiae_contig14806.3483.1|Name=mRNA_L-elsbetiae_contig14806.3483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=593bp|location=Sequence derived from alignment at L-elsbetiae_contig14806:3638..4230+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTCGTGCTGAATTTCCACGGGAGGGTGACCCAGGCCTCGGTGAAGA ACTTCCAGCTGGTGGTGCAGGGCGACGCCACGGAGCAGATCACGCTGCAG TTCGGGAGGACGCACACCAACGAGTTCACCATGGACTTCTGCCATCCCCT GTCCCCGCTGCAGGTATGTTGCATGTATACATTATTTTCTCCCATTATTG GCTTATTCGTCGTCTGCCCCACTGGCCCCCTTCCTCCACTACGACTATTT AGCTAGACGACCCAACCGGGGTCACACAGGAGGGTGTACCTAGGCGGAGA CGGACTGCACTCACGAACGAGTTCGCGGATTGGTTTGTTGTTTGCGGCCA CCACGGCCAAGAAAACATGTTTTTATTTTATTTTTTATTTTTTAAGCTGG CAAAATGCTCACCTCAGAGAAGAGAACCCCCCGGTATCGTGTACCCCCCC CCTCCCACGCACGGCTCTACTGCTGTGCCCCTCTCCTAGTGAAAGTAAGT AACCCGTGAGTGTGAAACCCGTCCGTTCCCCCGTTTCCCACGCTGTGTTA TCGGCAGGCGTTGGCCATCACGCTCACCAGCTTCGACTGCAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig14806:3638..4230+

>mRNA_L-elsbetiae_contig14806.3483.1 ID=mRNA_L-elsbetiae_contig14806.3483.1|Name=mRNA_L-elsbetiae_contig14806.3483.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=396bp|location=Sequence derived from alignment at L-elsbetiae_contig14806:3638..4230+ (Laminarionema elsbetiae ELsaHSoW15)
GGCGTTCGTGCTGAATTTCCACGGGAGGGTGACCCAGGCCTCGGTGAAGA
ACTTCCAGCTGGTGGTGCAGGGCGACGCCACGGAGCAGATCACGCTGCAG
TTCGGGAGGACGCACACCAACGAGTTCACCATGGACTTCTGCCATCCCCT
GTCCCCGCTGCAGGGCGTTCGTGCTGAATTTCCACGGGAGGGTGACCCAG
GCCTCGGTGAAGAACTTCCAGCTGGTGGTGCAGGGCGACGCCACGGAGCA
GATCACGCTGCAGTTCGGGAGGACGCACACCAACGAGTTCACCATGGACT
TCTGCCATCCCCTGTCCCCGCTGCAGGCGTTGGCCATCACGCTCACCAGC
TTCGACTGCAAGCGTTGGCCATCACGCTCACCAGCTTCGACTGCAA
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