mRNA_L-elsbetiae_contig14793.3474.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig14793.3474.1
Unique NamemRNA_L-elsbetiae_contig14793.3474.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig14793.3474.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig14793contigL-elsbetiae_contig14793:759..1208 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size452
Cds size450
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815596.2191384-CDS-L-elsbetiae_contig14793:758..12081622815596.2191384-CDS-L-elsbetiae_contig14793:758..1208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14793 759..1208 +
1691682981.019761-CDS-L-elsbetiae_contig14793:758..12081691682981.019761-CDS-L-elsbetiae_contig14793:758..1208Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig14793 759..1208 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig14793.3474.1prot_L-elsbetiae_contig14793.3474.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig14793 759..1208 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig14793.3474.1

>prot_L-elsbetiae_contig14793.3474.1 ID=prot_L-elsbetiae_contig14793.3474.1|Name=mRNA_L-elsbetiae_contig14793.3474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=150bp
VKRRVLLYHHESRRPGTSNVCVCSLHLHHHLSLVASGILRRSTPPHSSYK
MATHTPQMVTGRKIYRTYPYSAAYPYVSSSPEGGYGRRIFYVSGGEDIDE
RGGYREEKMGMTLGEMISGAGRKKAQTEEVGPPREQWSVRASFQQWGRWG
back to top

mRNA from alignment at L-elsbetiae_contig14793:759..1208+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig14793.3474.1 ID=mRNA_L-elsbetiae_contig14793.3474.1|Name=mRNA_L-elsbetiae_contig14793.3474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig14793:759..1208+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAACGTCGGGTATTGTTGTACCATCACGAGAGCCGGCGCCCCGGCAC
CAGTAATGTGTGTGTGTGTTCTCTTCATCTGCATCATCACTTATCACTCG
TTGCTAGTGGAATTTTACGGAGGAGCACACCTCCGCACTCTTCCTACAAA
ATGGCAACGCACACACCACAAATGGTTACCGGACGTAAGATATACCGTAC
GTATCCATATTCCGCTGCATATCCATACGTAAGTTCATCACCGGAGGGGG
GTTACGGACGACGCATTTTCTATGTCTCAGGAGGGGAGGACATTGACGAA
CGAGGTGGATATCGAGAGGAGAAGATGGGAATGACGTTGGGTGAAATGAT
ATCAGGGGCAGGGCGCAAGAAGGCACAAACAGAGGAGGTGGGTCCTCCTC
GAGAACAGTGGTCGGTGCGTGCATCGTTTCAGCAATGGGGGCGATGGGGA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig14793:759..1208+

>mRNA_L-elsbetiae_contig14793.3474.1 ID=mRNA_L-elsbetiae_contig14793.3474.1|Name=mRNA_L-elsbetiae_contig14793.3474.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=900bp|location=Sequence derived from alignment at L-elsbetiae_contig14793:759..1208+ (Laminarionema elsbetiae ELsaHSoW15)
GTCAAACGTCGGGTATTGTTGTACCATCACGAGAGCCGGCGCCCCGGCAC
CAGTAATGTGTGTGTGTGTTCTCTTCATCTGCATCATCACTTATCACTCG
TTGCTAGTGGAATTTTACGGAGGAGCACACCTCCGCACTCTTCCTACAAA
ATGGCAACGCACACACCACAAATGGTTACCGGACGTAAGATATACCGTAC
GTATCCATATTCCGCTGCATATCCATACGTAAGTTCATCACCGGAGGGGG
GTTACGGACGACGCATTTTCTATGTCTCAGGAGGGGAGGACATTGACGAA
CGAGGTGGATATCGAGAGGAGAAGATGGGAATGACGTTGGGTGAAATGAT
ATCAGGGGCAGGGCGCAAGAAGGCACAAACAGAGGAGGTGGGTCCTCCTC
GAGAACAGTGGTCGGTGCGTGCATCGTTTCAGCAATGGGGGCGATGGGGA
GTCAAACGTCGGGTATTGTTGTACCATCACGAGAGCCGGCGCCCCGGCAC
CAGTAATGTGTGTGTGTGTTCTCTTCATCTGCATCATCACTTATCACTCG
TTGCTAGTGGAATTTTACGGAGGAGCACACCTCCGCACTCTTCCTACAAA
ATGGCAACGCACACACCACAAATGGTTACCGGACGTAAGATATACCGTAC
GTATCCATATTCCGCTGCATATCCATACGTAAGTTCATCACCGGAGGGGG
GTTACGGACGACGCATTTTCTATGTCTCAGGAGGGGAGGACATTGACGAA
CGAGGTGGATATCGAGAGGAGAAGATGGGAATGACGTTGGGTGAAATGAT
ATCAGGGGCAGGGCGCAAGAAGGCACAAACAGAGGAGGTGGGTCCTCCTC
GAGAACAGTGGTCGGTGCGTGCATCGTTTCAGCAATGGGGGCGATGGGGA
back to top