mRNA_L-elsbetiae_contig1479.3472.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1479.3472.1
Unique NamemRNA_L-elsbetiae_contig1479.3472.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5L0E7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0E7_9PHAE)

HSP 1 Score: 166 bits (420), Expect = 1.030e-47
Identity = 84/167 (50.30%), Postives = 114/167 (68.26%), Query Frame = 1 
Query:   13 GGHFVPTNTTKIFLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFV-STLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADRERELRIDHDISPPSAGETQLLPPP 510
            GG F+ T  +   + QLLRK AYPD  M+++L+TL+ VDIT+FSPP+P GW+PQPR+   HLETFV ++ F VLD G   A + +TGR +QL+ E+ R V+  RDYLSLH  ++   E AVK RL+ DTN DIN++LG ++D     R D DISPP+  + Q + PP
Sbjct:   37 GGWFISTTLSNDAIAQLLRKVAYPDAEMIDSLMTLANVDITKFSPPIPTGWIPQPRDFFVHLETFVKASPFAVLDHGTHAAGEPSTGRRQQLKAEVSRVVSNARDYLSLHSAEITGQEAAVKTRLITDTNTDINEYLGNISDLGVATRTDDDISPPADDDVQPVAPP 203
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BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5JW69_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW69_9PHAE)

HSP 1 Score: 159 bits (401), Expect = 2.430e-45
Identity = 78/141 (55.32%), Postives = 99/141 (70.21%), Query Frame = 1 
Query:   13 GGHFVPTNTTKIFLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVAD 435
            GG FV T  +K  + QLLRK AYPD  M+++L+TL+ VDI +FSPPLP GW PQPR+ I HLETFV   F VLD G   A + +TGR +QL+ E+ R V+  RDYLSLH  ++   E AVK RL+ DTN DIN++LG V+D
Sbjct:   37 GGWFVSTTLSKNAIAQLLRKVAYPDAEMIDSLITLANVDIAKFSPPLPTGWTPQPRDFIVHLETFVKAFFAVLDHGTHAAGEPSTGRRQQLKAEVSRVVSNARDYLSLHSAEITGQEAAVKTRLITDTNTDINEYLGNVSD 177
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BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5JES5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES5_9PHAE)

HSP 1 Score: 157 bits (396), Expect = 1.230e-42
Identity = 85/184 (46.20%), Postives = 114/184 (61.96%), Query Frame = 1 
Query:   13 GGHFVPTNTTKIFLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADRERELRIDHDISPPSAGETQLLPPPHVPTSASADRHRQCSRHR 564
            GG FV T  +K  + QLLRK A+PD  ++++L+TL+ VDI +FSPPLP GW PQPR+ I HLETFV+T F VLD G   A + +TGR +QL+ E+ R V+ +RDYLS H  ++   E AVK RL+ DTN DIN++LG ++D      +     P         P   V  +A + R RQ  RHR
Sbjct:  186 GGWFVSTTMSKNAIAQLLRKVAFPDAEIIDSLMTLANVDIAKFSPPLPTGWTPQPRDFIVHLETFVNTFFAVLDQGTHAAGEPSTGRRQQLKAEVSRVVSNVRDYLSFHSAEITGQEAAVKTRLITDTNTDINEYLGNISDLGVATHL-----PAGRRRRATRPXXXVFAAARSHRGRQRQRHR 364
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BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5KLC0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLC0_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 9.850e-23
Identity = 57/129 (44.19%), Postives = 76/129 (58.91%), Query Frame = 1 
Query:   94 MLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADRERELRIDHDISPPS 480
            M+++L+TL+ VDI +FSPPLP GW PQPR+ I HLET                        +QL+ E+ R V+  RDYLSLH  ++   E AVK RL+ D N DIN++LG ++D     R D DISPP+
Sbjct:    1 MIDSLMTLANVDIAKFSPPLPTGWTPQPRDFIVHLET------------------------QQLKAEVSRIVSNARDYLSLHSAEITGQEAAVKTRLITDPNTDINEYLGNISDLGVATRTDDDISPPA 105
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BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5L341_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L341_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.520e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 
Query:   49 FLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADRERELRIDHDISPPSAGETQLLPPP 510
            F+  +  +Y++  +   + + +L+ + I    PP           +  H +TF++ LFK +++GM  AE+ A  R+   R E       +  YL+LH   L  HE  V+  L+   N  + D   I+     +LR  H   PP+A  T  +P P
Sbjct:  223 FVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFP 376
[Close]
BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Match: A0A6H5JGT0_9PHAE (Uncharacterized protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGT0_9PHAE)

HSP 1 Score: 62.0 bits (149), Expect = 1.850e-7
Identity = 41/154 (26.62%), Postives = 70/154 (45.45%), Query Frame = 1 
Query:   49 FLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPPLPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREIDRTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADRERELRIDHDISPPSAGETQLLPPP 510
            F+  +  +Y++  +   + + +L+ + I    PP           +  H +TF++ LFK +++GM  AE+ A  R+   R E       +  YL+LH   L  HE  V+  L+   N  + D   I+     +LR  H   PP+A  T  +P P
Sbjct:  215 FVKMVAGEYSHITEQGGKQMCSLTDIKIEHCFPPKSANAALAAMPVTVHFDTFITVLFKTIEYGMDTAEENAKLRVAAWRAEFASITRKLATYLTLHYTGLQPHENRVRNVLLDAINRGLEDGFRILHKMAYDLRWTHQDGPPTADATDAVPFP 368
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1479.3472.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L0E7_9PHAE1.030e-4750.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JW69_9PHAE2.430e-4555.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JES5_9PHAE1.230e-4246.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLC0_9PHAE9.850e-2344.19Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L341_9PHAE1.520e-726.62Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JGT0_9PHAE1.850e-726.62Uncharacterized protein n=5 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1479contigL-elsbetiae_contig1479:1451..2144 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-26_001610.2
Exons1
Model size695
Cds size693
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815595.9400716-CDS-L-elsbetiae_contig1479:1450..21431622815595.9400716-CDS-L-elsbetiae_contig1479:1450..2143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1479 1451..2143 +
1691682980.8238206-CDS-L-elsbetiae_contig1479:1450..21431691682980.8238206-CDS-L-elsbetiae_contig1479:1450..2143Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1479 1451..2143 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1479.3472.1prot_L-elsbetiae_contig1479.3472.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1479 1451..2143 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1479.3472.1

>prot_L-elsbetiae_contig1479.3472.1 ID=prot_L-elsbetiae_contig1479.3472.1|Name=mRNA_L-elsbetiae_contig1479.3472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=231bp
EDVAGGHFVPTNTTKIFLTQLLRKYAYPDQAMLETLVTLSRVDITEFSPP
LPPGWLPQPRELICHLETFVSTLFKVLDFGMQNAEDLATGRLRQLRREID
RTVAAIRDYLSLHQVQLAVHEEAVKARLVMDTNADINDFLGIVADREREL
RIDHDISPPSAGETQLLPPPHVPTSASADRHRQCSRHRRQAQQRARRAVT
APAAEQREEGGRKRSRSRQRGVPRADGHGRS
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mRNA from alignment at L-elsbetiae_contig1479:1451..2144+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1479.3472.1 ID=mRNA_L-elsbetiae_contig1479.3472.1|Name=mRNA_L-elsbetiae_contig1479.3472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=694bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:1451..2144+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATGTAGCCGGCGGCCACTTCGTCCCAACGAACACGACCAAGATTTT
TCTAACGCAGCTGCTTCGCAAATACGCCTACCCCGACCAGGCCATGCTCG
AAACCCTGGTGACACTAAGCCGCGTCGACATCACAGAATTTTCCCCGCCT
CTCCCACCAGGATGGCTCCCCCAACCTCGGGAATTAATCTGCCACCTTGA
GACTTTCGTGTCGACGCTCTTCAAAGTGCTGGATTTCGGTATGCAAAATG
CCGAAGACCTCGCAACTGGACGCCTGCGCCAGCTGCGGCGTGAGATCGAC
CGCACCGTGGCCGCCATCAGGGACTACCTCAGCCTACACCAAGTCCAGCT
CGCAGTGCACGAGGAAGCCGTGAAGGCTCGGCTGGTCATGGACACCAACG
CGGACATCAACGACTTCCTCGGCATCGTAGCCGACCGTGAGCGGGAACTC
CGCATCGACCACGACATCTCCCCGCCAAGCGCCGGCGAAACCCAGCTTCT
TCCCCCCCCCCACGTTCCTACGTCTGCGTCAGCTGACCGCCATCGGCAGT
GCTCACGCCATCGTCGGCAAGCTCAGCAACGGGCTCGCCGGGCTGTCACA
GCCCCCGCAGCAGAGCAACGAGAGGAAGGCGGCCGCAAGCGGAGCCGCAG
TCGGCAACGCGGCGTCCCGCGCGCGGACGGCCACGGCAGGAGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1479:1451..2144+

>mRNA_L-elsbetiae_contig1479.3472.1 ID=mRNA_L-elsbetiae_contig1479.3472.1|Name=mRNA_L-elsbetiae_contig1479.3472.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1386bp|location=Sequence derived from alignment at L-elsbetiae_contig1479:1451..2144+ (Laminarionema elsbetiae ELsaHSoW15)
GAAGATGTAGCCGGCGGCCACTTCGTCCCAACGAACACGACCAAGATTTT
TCTAACGCAGCTGCTTCGCAAATACGCCTACCCCGACCAGGCCATGCTCG
AAACCCTGGTGACACTAAGCCGCGTCGACATCACAGAATTTTCCCCGCCT
CTCCCACCAGGATGGCTCCCCCAACCTCGGGAATTAATCTGCCACCTTGA
GACTTTCGTGTCGACGCTCTTCAAAGTGCTGGATTTCGGTATGCAAAATG
CCGAAGACCTCGCAACTGGACGCCTGCGCCAGCTGCGGCGTGAGATCGAC
CGCACCGTGGCCGCCATCAGGGACTACCTCAGCCTACACCAAGTCCAGCT
CGCAGTGCACGAGGAAGCCGTGAAGGCTCGGCTGGTCATGGACACCAACG
CGGACATCAACGACTTCCTCGGCATCGTAGCCGACCGTGAGCGGGAACTC
CGCATCGACCACGACATCTCCCCGCCAAGCGCCGGCGAAACCCAGCTTCT
TCCCCCCCCCCACGTTCCTACGTCTGCGTCAGCTGACCGCCATCGGCAGT
GCTCACGCCATCGTCGGCAAGCTCAGCAACGGGCTCGCCGGGCTGTCACA
GCCCCCGCAGCAGAGCAACGAGAGGAAGGCGGCCGCAAGCGGAGCCGCAG
TCGGCAACGCGGCGTCCCGCGCGCGGACGGCCACGGCAGGAGCGAAGATG
TAGCCGGCGGCCACTTCGTCCCAACGAACACGACCAAGATTTTTCTAACG
CAGCTGCTTCGCAAATACGCCTACCCCGACCAGGCCATGCTCGAAACCCT
GGTGACACTAAGCCGCGTCGACATCACAGAATTTTCCCCGCCTCTCCCAC
CAGGATGGCTCCCCCAACCTCGGGAATTAATCTGCCACCTTGAGACTTTC
GTGTCGACGCTCTTCAAAGTGCTGGATTTCGGTATGCAAAATGCCGAAGA
CCTCGCAACTGGACGCCTGCGCCAGCTGCGGCGTGAGATCGACCGCACCG
TGGCCGCCATCAGGGACTACCTCAGCCTACACCAAGTCCAGCTCGCAGTG
CACGAGGAAGCCGTGAAGGCTCGGCTGGTCATGGACACCAACGCGGACAT
CAACGACTTCCTCGGCATCGTAGCCGACCGTGAGCGGGAACTCCGCATCG
ACCACGACATCTCCCCGCCAAGCGCCGGCGAAACCCAGCTTCTTCCCCCC
CCCCACGTTCCTACGTCTGCGTCAGCTGACCGCCATCGGCAGTGCTCACG
CCATCGTCGGCAAGCTCAGCAACGGGCTCGCCGGGCTGTCACAGCCCCCG
CAGCAGAGCAACGAGAGGAAGGCGGCCGCAAGCGGAGCCGCAGTCGGCAA
CGCGGCGTCCCGCGCGCGGACGGCCACGGCAGGAGC
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